RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 MYOM3Q5VTT5 1437 aa27.99■■■□□ 2.07
PCF11-206ENST00000533018 CEP170BQ9Y4F5 1589 aaPredicted RBP27.99■■■□□ 2.07
PCF11-206ENST00000533018 KDM5DQ9BY66 1539 aa27.97■■■□□ 2.07
PCF11-206ENST00000533018 MIA2Q96PC5 1412 aa27.96■■■□□ 2.07
PCF11-206ENST00000533018 FBXO31Q5XUX0 539 aaPredicted RBP27.95■■■□□ 2.06
PCF11-206ENST00000533018 PKD2Q13563 968 aa27.92■■■□□ 2.06
PCF11-206ENST00000533018 MAST1Q9Y2H9 1570 aa27.91■■■□□ 2.06
PCF11-206ENST00000533018 PLA2R1Q13018 1463 aa27.9■■■□□ 2.06
PCF11-206ENST00000533018 TNRQ92752 1358 aa27.9■■■□□ 2.06
PCF11-206ENST00000533018 FAM135AQ9P2D6 1515 aa27.9■■■□□ 2.06
PCF11-206ENST00000533018 A2ML1A8K2U0 1454 aa27.89■■■□□ 2.06
PCF11-206ENST00000533018 PZPP20742 1482 aa27.89■■■□□ 2.05
PCF11-206ENST00000533018 DNMT1P26358 1616 aaKnown RBP27.87■■■□□ 2.05
PCF11-206ENST00000533018 LTBP4Q8N2S1 1624 aa27.86■■■□□ 2.05
PCF11-206ENST00000533018 TCOF1Q13428 1488 aaKnown RBP27.84■■■□□ 2.05
PCF11-206ENST00000533018 ZNF335Q9H4Z2 1342 aaPredicted RBP27.83■■■□□ 2.05
PCF11-206ENST00000533018 RNF17Q9BXT8 1623 aaKnown RBP27.82■■■□□ 2.04
PCF11-206ENST00000533018 PTPN23Q9H3S7 1636 aa27.82■■■□□ 2.04
PCF11-206ENST00000533018 EIF2AK4Q9P2K8 1649 aaKnown RBP27.81■■■□□ 2.04
PCF11-206ENST00000533018 DUOX2Q9NRD8 1548 aa27.79■■■□□ 2.04
PCF11-206ENST00000533018 ZC3H13Q5T200 1668 aaKnown RBP27.78■■■□□ 2.04
PCF11-206ENST00000533018 RRP7BPQ9NSQ0 103 aa27.78■■■□□ 2.04
PCF11-206ENST00000533018 CFAP65Q6ZU64 1925 aaKnown RBP27.78■■■□□ 2.04
PCF11-206ENST00000533018 ABCC3O15438 1527 aa27.77■■■□□ 2.04
PCF11-206ENST00000533018 CROCC2H7BZ55 1655 aa27.77■■■□□ 2.04
PCF11-206ENST00000533018 ABCC5O15440 1437 aa27.76■■■□□ 2.04
PCF11-206ENST00000533018 KIF15Q9NS87 1388 aa27.76■■■□□ 2.03
PCF11-206ENST00000533018 POLR1AO95602 1720 aaPredicted RBP27.76■■■□□ 2.03
PCF11-206ENST00000533018 THEMISQ8N1K5 641 aaPredicted RBP27.76■■■□□ 2.03
PCF11-206ENST00000533018 IQSEC2Q5JU85 1478 aa27.75■■■□□ 2.03
PCF11-206ENST00000533018 NLRP1Q9C000 1473 aa27.75■■■□□ 2.03
PCF11-206ENST00000533018 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.74■■■□□ 2.031e-25■■□□□ 13.2
PCF11-206ENST00000533018 CEP152O94986 1710 aa27.74■■■□□ 2.03
PCF11-206ENST00000533018 FGD6Q6ZV73 1430 aa27.74■■■□□ 2.03
PCF11-206ENST00000533018 UGGT1Q9NYU2 1555 aa27.73■■■□□ 2.03
PCF11-206ENST00000533018 SHANK2Q9UPX8 1470 aa27.73■■■□□ 2.03
PCF11-206ENST00000533018 ANKLE2Q86XL3 938 aa27.73■■■□□ 2.03
PCF11-206ENST00000533018 DAPK1P53355 1430 aa27.72■■■□□ 2.03
PCF11-206ENST00000533018 MROH1Q8NDA8 1641 aa27.71■■■□□ 2.03
PCF11-206ENST00000533018 CHIC2Q9UKJ5 165 aa27.71■■■□□ 2.03
PCF11-206ENST00000533018 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.7■■■□□ 2.028e-11■■■■□ 26.5
PCF11-206ENST00000533018 ERBINQ96RT1 1412 aa27.67■■■□□ 2.02
PCF11-206ENST00000533018 UBAP1LF5GYI3 381 aa27.67■■■□□ 2.02
PCF11-206ENST00000533018 SPATA31D1Q6ZQQ2 1576 aa27.67■■■□□ 2.02
PCF11-206ENST00000533018 NEURL4Q96JN8 1562 aa27.67■■■□□ 2.02
PCF11-206ENST00000533018 ERVK-7P63135 1459 aa27.66■■■□□ 2.02
PCF11-206ENST00000533018 ANKRD30AQ9BXX3 1397 aa27.64■■■□□ 2.02
PCF11-206ENST00000533018 FAM50AQ14320 339 aaKnown RBP27.64■■■□□ 2.02
PCF11-206ENST00000533018 PRDM15P57071 1507 aaPredicted RBP27.62■■■□□ 2.01
PCF11-206ENST00000533018 KANK1Q14678 1352 aa27.61■■■□□ 2.01
PCF11-206ENST00000533018 NPHP4O75161 1426 aaPredicted RBP27.6■■■□□ 2.01
PCF11-206ENST00000533018 DEPDC5O75140 1603 aa27.58■■■□□ 2.01
PCF11-206ENST00000533018 DISP3Q9P2K9 1392 aa27.56■■■□□ 2
PCF11-206ENST00000533018 IQGAP1P46940 1657 aa27.56■■■□□ 2
PCF11-206ENST00000533018 ARHGAP31Q2M1Z3 1444 aa27.55■■■□□ 2
PCF11-206ENST00000533018 MED14O60244 1454 aa27.55■■■□□ 2
PCF11-206ENST00000533018 CPS1P31327 1500 aa27.55■■■□□ 2
PCF11-206ENST00000533018 UBR1Q8IWV7 1749 aa27.54■■■□□ 2
PCF11-206ENST00000533018 SCAF1Q9H7N4 1312 aaKnown RBP27.53■■■□□ 2
PCF11-206ENST00000533018 STAG3Q9UJ98 1225 aa27.51■■□□□ 1.99
PCF11-206ENST00000533018 VWDEQ8N2E2 1590 aa27.51■■□□□ 1.99
PCF11-206ENST00000533018 TOM1O60784 492 aa27.48■■□□□ 1.99
PCF11-206ENST00000533018 PIP4K2BP78356 416 aa27.48■■□□□ 1.99
PCF11-206ENST00000533018 TXNDC2Q86VQ3 553 aa27.47■■□□□ 1.99
PCF11-206ENST00000533018 ADGRL2O95490 1459 aa27.46■■□□□ 1.99
PCF11-206ENST00000533018 EID1Q9Y6B2 187 aa27.46■■□□□ 1.99
PCF11-206ENST00000533018 PIK3C2BO00750 1634 aa27.45■■□□□ 1.98
PCF11-206ENST00000533018 SCAF11Q99590 1463 aaKnown RBP27.44■■□□□ 1.98
PCF11-206ENST00000533018 LMTK2Q8IWU2 1503 aa27.43■■□□□ 1.98
PCF11-206ENST00000533018 LTKP29376 864 aa27.43■■□□□ 1.98
PCF11-206ENST00000533018 ANKRD50Q9ULJ7 1429 aa27.42■■□□□ 1.98
PCF11-206ENST00000533018 SLIT1O75093 1534 aa27.41■■□□□ 1.98
PCF11-206ENST00000533018 IDI1Q13907 227 aa27.4■■□□□ 1.98
PCF11-206ENST00000533018 ARHGAP23Q9P227 1491 aa27.39■■□□□ 1.98
PCF11-206ENST00000533018 PPARGC1BQ86YN6 1023 aaKnown RBP27.39■■□□□ 1.98
PCF11-206ENST00000533018 STRCP1A6NGW2 1772 aa27.39■■□□□ 1.98
PCF11-206ENST00000533018 EFCAB6Q5THR3 1501 aa27.38■■□□□ 1.97
PCF11-206ENST00000533018 TMEM2Q9UHN6 1383 aa27.36■■□□□ 1.97
PCF11-206ENST00000533018 SYNMO15061 1565 aa27.35■■□□□ 1.97
PCF11-206ENST00000533018 ITGAEP38570 1179 aa27.34■■□□□ 1.97
PCF11-206ENST00000533018 ILDR2Q71H61 639 aa27.34■■□□□ 1.97
PCF11-206ENST00000533018 LRRC7Q96NW7 1537 aa27.33■■□□□ 1.97
PCF11-206ENST00000533018 HSPA1LP34931 641 aa27.33■■□□□ 1.97
PCF11-206ENST00000533018 KDM5AP29375 1690 aaKnown RBP27.32■■□□□ 1.96
PCF11-206ENST00000533018 NOS1P29475 1434 aa27.32■■□□□ 1.96
PCF11-206ENST00000533018 SLC52A1Q9NWF4 448 aa27.31■■□□□ 1.96
PCF11-206ENST00000533018 BCANQ96GW7 911 aa27.28■■□□□ 1.96
PCF11-206ENST00000533018 TET3O43151 1660 aa27.27■■□□□ 1.96
PCF11-206ENST00000533018 RPRD2Q5VT52 1461 aaKnown RBP27.27■■□□□ 1.96
PCF11-206ENST00000533018 SENP3Q9H4L4 574 aaPredicted RBP27.27■■□□□ 1.96
PCF11-206ENST00000533018 ADGRB3O60242 1522 aa27.26■■□□□ 1.96
PCF11-206ENST00000533018 ROCK1Q13464 1354 aa27.25■■□□□ 1.95
PCF11-206ENST00000533018 SLC26A8Q96RN1 970 aa27.25■■□□□ 1.95
PCF11-206ENST00000533018 GCC2Q8IWJ2 1684 aa27.24■■□□□ 1.95
PCF11-206ENST00000533018 UNC13BO14795 1591 aa27.23■■□□□ 1.95
PCF11-206ENST00000533018 ALKQ9UM73 1620 aa27.23■■□□□ 1.95
PCF11-206ENST00000533018 MYO5BQ9ULV0 1848 aa27.21■■□□□ 1.95
PCF11-206ENST00000533018 CHGAP10645 457 aaKnown RBP27.21■■□□□ 1.95
PCF11-206ENST00000533018 PPP1R15AO75807 674 aaPredicted RBP27.19■■□□□ 1.94
PCF11-206ENST00000533018 XIRP1Q702N8 1843 aaKnown RBP27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms