RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 NISCHQ9Y2I1 1504 aa44.2■■■■■ 4.67
PCF11-206ENST00000533018 CCDC180Q9P1Z9 1646 aa39.58■■■■□ 3.93
PCF11-206ENST00000533018 ABCC9O60706 1549 aa39.53■■■■□ 3.92
PCF11-206ENST00000533018 RB1CC1Q8TDY2 1594 aa37.66■■■■□ 3.62
PCF11-206ENST00000533018 DCAF8L2P0C7V8 631 aa37.47■■■■□ 3.59
PCF11-206ENST00000533018 NACADO15069 1562 aa37.4■■■■□ 3.58
PCF11-206ENST00000533018 DNAJC5BQ9UF47 199 aa36.9■■■■□ 3.5
PCF11-206ENST00000533018 MYO15BQ96JP2 1530 aa36.86■■■■□ 3.49
PCF11-206ENST00000533018 PABPN1Q86U42 306 aaKnown RBP eCLIP36.86■■■■□ 3.49
PCF11-206ENST00000533018 UNC13AQ9UPW8 1703 aa36.82■■■■□ 3.49
PCF11-206ENST00000533018 ZCCHC6Q5VYS8 1495 aaKnown RBP36.64■■■■□ 3.46
PCF11-206ENST00000533018 BICRAQ9NZM4 1560 aa36.49■■■■□ 3.43
PCF11-206ENST00000533018 DCAF1Q9Y4B6 1507 aa36.46■■■■□ 3.43
PCF11-206ENST00000533018 SCRIBQ14160 1630 aa36.17■■■■□ 3.38
PCF11-206ENST00000533018 SHROOM4Q9ULL8 1493 aa35.99■■■■□ 3.35
PCF11-206ENST00000533018 CC2D2AQ9P2K1 1620 aa35.68■■■■□ 3.3
PCF11-206ENST00000533018 EIF4G1Q04637 1599 aaKnown RBP35.63■■■■□ 3.29
PCF11-206ENST00000533018 CECR2Q9BXF3 1484 aa35.57■■■■□ 3.28
PCF11-206ENST00000533018 NCAPD3P42695 1498 aa34.51■■■■□ 3.11
PCF11-206ENST00000533018 SMARCA4P51532 1647 aa34.46■■■■□ 3.11
PCF11-206ENST00000533018 ATAD2BQ9ULI0 1458 aa34.45■■■■□ 3.1
PCF11-206ENST00000533018 SMARCA2P51531 1590 aa34.38■■■■□ 3.09
PCF11-206ENST00000533018 BAZ1AQ9NRL2 1556 aaPredicted RBP34.32■■■■□ 3.09
PCF11-206ENST00000533018 HMGXB3Q12766 1538 aa34.26■■■■□ 3.08
PCF11-206ENST00000533018 BAZ1BQ9UIG0 1483 aaKnown RBP34.17■■■■□ 3.06
PCF11-206ENST00000533018 ERCC6Q03468 1493 aa34.15■■■■□ 3.06
PCF11-206ENST00000533018 MROH2BQ7Z745 1585 aa34.08■■■■□ 3.05
PCF11-206ENST00000533018 PEG3Q9GZU2 1588 aa34.06■■■■□ 3.04
PCF11-206ENST00000533018 NESP48681 1621 aa33.98■■■■□ 3.03
PCF11-206ENST00000533018 CUX2O14529 1486 aa33.95■■■■□ 3.02
PCF11-206ENST00000533018 DNAJC5Q9H3Z4 198 aa33.79■■■■□ 3
PCF11-206ENST00000533018 LAMC3Q9Y6N6 1575 aa33.74■■■□□ 2.99
PCF11-206ENST00000533018 WIZO95785 1651 aa33.72■■■□□ 2.99
PCF11-206ENST00000533018 PDS5BQ9NTI5 1447 aa33.57■■■□□ 2.96
PCF11-206ENST00000533018 KIF21AQ7Z4S6 1674 aa33.56■■■□□ 2.96
PCF11-206ENST00000533018 THOC2Q8NI27 1593 aaKnown RBP33.55■■■□□ 2.96
PCF11-206ENST00000533018 CADPSQ9ULU8 1353 aa33.5■■■□□ 2.95
PCF11-206ENST00000533018 RSF1Q96T23 1441 aaPredicted RBP33.42■■■□□ 2.94
PCF11-206ENST00000533018 TOP2AP11388 1531 aaKnown RBP33.26■■■□□ 2.91
PCF11-206ENST00000533018 MRC2Q9UBG0 1479 aa33.25■■■□□ 2.91
PCF11-206ENST00000533018 CEP164Q9UPV0 1460 aa33.17■■■□□ 2.9
PCF11-206ENST00000533018 FANCD2Q9BXW9 1451 aa33.14■■■□□ 2.9
PCF11-206ENST00000533018 WDR62O43379 1518 aa33.13■■■□□ 2.89
PCF11-206ENST00000533018 CFTRP13569 1480 aa33.12■■■□□ 2.89
PCF11-206ENST00000533018 CCDC88BA6NC98 1476 aa32.9■■■□□ 2.86
PCF11-206ENST00000533018 PRDM2Q13029 1718 aa32.86■■■□□ 2.85
PCF11-206ENST00000533018 URB2Q14146 1524 aaKnown RBP32.83■■■□□ 2.85
PCF11-206ENST00000533018 TOPBP1Q92547 1522 aa32.51■■■□□ 2.8
PCF11-206ENST00000533018 OSCARQ8IYS5 282 aa32.51■■■□□ 2.79
PCF11-206ENST00000533018 TRIM41Q8WV44 630 aa32.49■■■□□ 2.79
PCF11-206ENST00000533018 IFT140Q96RY7 1462 aa32.48■■■□□ 2.79
PCF11-206ENST00000533018 ABCC8Q09428 1581 aa32.46■■■□□ 2.79
PCF11-206ENST00000533018 ZNF608Q9ULD9 1512 aaPredicted RBP32.43■■■□□ 2.78
PCF11-206ENST00000533018 DNMBPQ6XZF7 1577 aa32.41■■■□□ 2.78
PCF11-206ENST00000533018 EIF4G3O43432 1585 aaKnown RBP32.25■■■□□ 2.75
PCF11-206ENST00000533018 SUPT5HO00267 1087 aaKnown RBP32.22■■■□□ 2.75
PCF11-206ENST00000533018 TARBP1Q13395 1621 aaKnown RBP32.19■■■□□ 2.74
PCF11-206ENST00000533018 POLA1P09884 1462 aaPredicted RBP32.19■■■□□ 2.74
PCF11-206ENST00000533018 AQRO60306 1485 aaKnown RBP eCLIP32.17■■■□□ 2.74
PCF11-206ENST00000533018 RAD54L2Q9Y4B4 1467 aa32.1■■■□□ 2.73
PCF11-206ENST00000533018 SOGA1O94964 1423 aa32.09■■■□□ 2.73
PCF11-206ENST00000533018 FBLN2P98095 1184 aa32.05■■■□□ 2.72
PCF11-206ENST00000533018 RIMBP3CA6NJZ7 1639 aa32.03■■■□□ 2.72
PCF11-206ENST00000533018 RIMBP3BA6NNM3 1639 aa32.03■■■□□ 2.72
PCF11-206ENST00000533018 RIMBP3Q9UFD9 1639 aa32.03■■■□□ 2.72
PCF11-206ENST00000533018 CHD1O14646 1710 aa32.03■■■□□ 2.72
PCF11-206ENST00000533018 FGD5Q6ZNL6 1462 aa32.03■■■□□ 2.72
PCF11-206ENST00000533018 TDRD9Q8NDG6 1382 aaKnown RBP32.02■■■□□ 2.72
PCF11-206ENST00000533018 CUX1P39880 1505 aa32■■■□□ 2.71
PCF11-206ENST00000533018 ARHGEF11O15085 1522 aa31.92■■■□□ 2.7
PCF11-206ENST00000533018 WDR97A6NE52 1622 aa31.86■■■□□ 2.69
PCF11-206ENST00000533018 SNAPC4Q5SXM2 1469 aa31.84■■■□□ 2.69
PCF11-206ENST00000533018 CHMP7Q8WUX9 453 aaPredicted RBP31.79■■■□□ 2.68
PCF11-206ENST00000533018 CYB5RLQ6IPT4 315 aa31.77■■■□□ 2.68
PCF11-206ENST00000533018 GRIN2BQ13224 1484 aa31.77■■■□□ 2.68
PCF11-206ENST00000533018 MAGI1Q96QZ7 1491 aaPredicted RBP31.73■■■□□ 2.67
PCF11-206ENST00000533018 GAPVD1Q14C86 1478 aa31.69■■■□□ 2.66
PCF11-206ENST00000533018 PBRM1Q86U86 1689 aa31.69■■■□□ 2.66
PCF11-206ENST00000533018 ABCA10Q8WWZ4 1543 aa31.65■■■□□ 2.66
PCF11-206ENST00000533018 SYNJ1O43426 1573 aa31.64■■■□□ 2.66
PCF11-206ENST00000533018 SYNJ2O15056 1496 aa31.64■■■□□ 2.66
PCF11-206ENST00000533018 ARAP1Q96P48 1450 aa31.6■■■□□ 2.65
PCF11-206ENST00000533018 WRNQ14191 1432 aaPredicted RBP eCLIP31.59■■■□□ 2.65
PCF11-206ENST00000533018 ABCA5Q8WWZ7 1642 aa31.58■■■□□ 2.65
PCF11-206ENST00000533018 CLASP1Q7Z460 1538 aa31.58■■■□□ 2.65
PCF11-206ENST00000533018 TOP2BQ02880 1626 aa31.54■■■□□ 2.64
PCF11-206ENST00000533018 BIVM-ERCC5R4GMW8 1640 aa31.53■■■□□ 2.64
PCF11-206ENST00000533018 TRHP20396 242 aaPredicted RBP31.43■■■□□ 2.62
PCF11-206ENST00000533018 GRIN2AQ12879 1464 aa31.35■■■□□ 2.61
PCF11-206ENST00000533018 ADAMTS12P58397 1594 aa31.34■■■□□ 2.61
PCF11-206ENST00000533018 FHAD1B1AJZ9 1412 aa31.28■■■□□ 2.6
PCF11-206ENST00000533018 ERICH3Q5RHP9 1530 aa31.26■■■□□ 2.59
PCF11-206ENST00000533018 CEP170Q5SW79 1584 aa31.23■■■□□ 2.59
PCF11-206ENST00000533018 NUP160Q12769 1436 aa31.2■■■□□ 2.59
PCF11-206ENST00000533018 ERCC6L2Q5T890 1561 aa31.13■■■□□ 2.57
PCF11-206ENST00000533018 SHROOM2Q13796 1616 aa31.05■■■□□ 2.56
PCF11-206ENST00000533018 JPH4Q96JJ6 628 aa30.98■■■□□ 2.55
PCF11-206ENST00000533018 KIF27Q86VH2 1401 aa30.97■■■□□ 2.55
PCF11-206ENST00000533018 PRG4Q92954 1404 aaPredicted RBP30.97■■■□□ 2.55
PCF11-206ENST00000533018 IGF1RP08069 1367 aa30.91■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms