RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 TNRQ92752 1358 aa20.36■□□□□ 0.85
CPSF1-204ENST00000529288 MYO3AQ8NEV4 1616 aa20.36■□□□□ 0.85
CPSF1-204ENST00000529288 MAP3K1Q13233 1512 aa20.36■□□□□ 0.85
CPSF1-204ENST00000529288 CEP170BQ9Y4F5 1589 aaPredicted RBP20.35■□□□□ 0.85
CPSF1-204ENST00000529288 ZNF335Q9H4Z2 1342 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-204ENST00000529288 MIA2Q96PC5 1412 aa20.34■□□□□ 0.85
CPSF1-204ENST00000529288 KDM5DQ9BY66 1539 aa20.33■□□□□ 0.85
CPSF1-204ENST00000529288 A2ML1A8K2U0 1454 aa20.31■□□□□ 0.84
CPSF1-204ENST00000529288 PLA2R1Q13018 1463 aa20.3■□□□□ 0.84
CPSF1-204ENST00000529288 RRP7BPQ9NSQ0 103 aa20.3■□□□□ 0.84
CPSF1-204ENST00000529288 PZPP20742 1482 aa20.3■□□□□ 0.84
CPSF1-204ENST00000529288 LTBP4Q8N2S1 1624 aa20.29■□□□□ 0.84
CPSF1-204ENST00000529288 ZNF142P52746 1687 aaPredicted RBP20.28■□□□□ 0.84
CPSF1-204ENST00000529288 TCOF1Q13428 1488 aaKnown RBP20.27■□□□□ 0.84
CPSF1-204ENST00000529288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.27■□□□□ 0.842e-11■□□□□ 11.2
CPSF1-204ENST00000529288 MAST1Q9Y2H9 1570 aa20.26■□□□□ 0.83
CPSF1-204ENST00000529288 THEMISQ8N1K5 641 aaPredicted RBP20.26■□□□□ 0.83
CPSF1-204ENST00000529288 CHIC2Q9UKJ5 165 aa20.26■□□□□ 0.83
CPSF1-204ENST00000529288 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.25■□□□□ 0.83
CPSF1-204ENST00000529288 DNMT1P26358 1616 aaKnown RBP20.25■□□□□ 0.83
CPSF1-204ENST00000529288 ANKLE2Q86XL3 938 aa20.25■□□□□ 0.83
CPSF1-204ENST00000529288 KIF15Q9NS87 1388 aa20.24■□□□□ 0.83
CPSF1-204ENST00000529288 FAM135AQ9P2D6 1515 aa20.24■□□□□ 0.83
CPSF1-204ENST00000529288 UBAP1LF5GYI3 381 aa20.24■□□□□ 0.83
CPSF1-204ENST00000529288 ABCC5O15440 1437 aa20.24■□□□□ 0.83
CPSF1-204ENST00000529288 ABCC3O15438 1527 aa20.21■□□□□ 0.83
CPSF1-204ENST00000529288 DUOX2Q9NRD8 1548 aa20.21■□□□□ 0.83
CPSF1-204ENST00000529288 PTPN23Q9H3S7 1636 aa20.2■□□□□ 0.82
CPSF1-204ENST00000529288 FAM50AQ14320 339 aaKnown RBP20.2■□□□□ 0.82
CPSF1-204ENST00000529288 FGD6Q6ZV73 1430 aa20.19■□□□□ 0.82
CPSF1-204ENST00000529288 NLRP1Q9C000 1473 aa20.19■□□□□ 0.82
CPSF1-204ENST00000529288 DAPK1P53355 1430 aa20.19■□□□□ 0.82
CPSF1-204ENST00000529288 IQSEC2Q5JU85 1478 aa20.18■□□□□ 0.82
CPSF1-204ENST00000529288 UGGT1Q9NYU2 1555 aa20.18■□□□□ 0.82
CPSF1-204ENST00000529288 RNF17Q9BXT8 1623 aaKnown RBP20.18■□□□□ 0.82
CPSF1-204ENST00000529288 DISP3Q9P2K9 1392 aa20.17■□□□□ 0.82
CPSF1-204ENST00000529288 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
CPSF1-204ENST00000529288 EIF2AK4Q9P2K8 1649 aaKnown RBP20.16■□□□□ 0.82
CPSF1-204ENST00000529288 ANKRD30AQ9BXX3 1397 aa20.15■□□□□ 0.82
CPSF1-204ENST00000529288 ERVK-7P63135 1459 aa20.15■□□□□ 0.82
CPSF1-204ENST00000529288 SHANK2Q9UPX8 1470 aa20.15■□□□□ 0.82
CPSF1-204ENST00000529288 KANK1Q14678 1352 aa20.14■□□□□ 0.81
CPSF1-204ENST00000529288 NPHP4O75161 1426 aaPredicted RBP20.13■□□□□ 0.81
CPSF1-204ENST00000529288 ERBINQ96RT1 1412 aa20.13■□□□□ 0.81
CPSF1-204ENST00000529288 MROH1Q8NDA8 1641 aa20.13■□□□□ 0.81
CPSF1-204ENST00000529288 PIP4K2BP78356 416 aa20.12■□□□□ 0.81
CPSF1-204ENST00000529288 ZC3H13Q5T200 1668 aaKnown RBP20.12■□□□□ 0.81
CPSF1-204ENST00000529288 NEURL4Q96JN8 1562 aa20.12■□□□□ 0.81
CPSF1-204ENST00000529288 STAG3Q9UJ98 1225 aa20.11■□□□□ 0.81
CPSF1-204ENST00000529288 SPATA31D1Q6ZQQ2 1576 aa20.11■□□□□ 0.81
CPSF1-204ENST00000529288 CEP152O94986 1710 aa20.1■□□□□ 0.81
CPSF1-204ENST00000529288 POLR1AO95602 1720 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-204ENST00000529288 CROCC2H7BZ55 1655 aa20.09■□□□□ 0.81
CPSF1-204ENST00000529288 TXNDC2Q86VQ3 553 aa20.08■□□□□ 0.81
CPSF1-204ENST00000529288 TOM1O60784 492 aa20.07■□□□□ 0.8
CPSF1-204ENST00000529288 PPARGC1BQ86YN6 1023 aaKnown RBP20.05■□□□□ 0.8
CPSF1-204ENST00000529288 EID1Q9Y6B2 187 aa20.05■□□□□ 0.8
CPSF1-204ENST00000529288 CPS1P31327 1500 aa20.05■□□□□ 0.8
CPSF1-204ENST00000529288 PRDM15P57071 1507 aaPredicted RBP20.05■□□□□ 0.8
CPSF1-204ENST00000529288 MED14O60244 1454 aa20.05■□□□□ 0.8
CPSF1-204ENST00000529288 CFAP65Q6ZU64 1925 aaKnown RBP20.04■□□□□ 0.8
CPSF1-204ENST00000529288 ARHGAP31Q2M1Z3 1444 aa20.04■□□□□ 0.8
CPSF1-204ENST00000529288 LTKP29376 864 aa20.04■□□□□ 0.8
CPSF1-204ENST00000529288 ILDR2Q71H61 639 aa20.02■□□□□ 0.8
CPSF1-204ENST00000529288 SENP3Q9H4L4 574 aaPredicted RBP20.02■□□□□ 0.8
CPSF1-204ENST00000529288 DEPDC5O75140 1603 aa20.02■□□□□ 0.79
CPSF1-204ENST00000529288 VWDEQ8N2E2 1590 aa20.01■□□□□ 0.79
CPSF1-204ENST00000529288 IDI1Q13907 227 aa20.01■□□□□ 0.79
CPSF1-204ENST00000529288 ITGAEP38570 1179 aa20■□□□□ 0.79
CPSF1-204ENST00000529288 IQGAP1P46940 1657 aa20■□□□□ 0.79
CPSF1-204ENST00000529288 SCAF11Q99590 1463 aaKnown RBP19.99■□□□□ 0.79
CPSF1-204ENST00000529288 HSPA1LP34931 641 aa19.99■□□□□ 0.79
CPSF1-204ENST00000529288 ANKRD50Q9ULJ7 1429 aa19.98■□□□□ 0.79
CPSF1-204ENST00000529288 UBR1Q8IWV7 1749 aa19.97■□□□□ 0.79
CPSF1-204ENST00000529288 BCANQ96GW7 911 aa19.97■□□□□ 0.79
CPSF1-204ENST00000529288 ADGRL2O95490 1459 aa19.97■□□□□ 0.79
CPSF1-204ENST00000529288 TMEM2Q9UHN6 1383 aa19.95■□□□□ 0.79
CPSF1-204ENST00000529288 LMTK2Q8IWU2 1503 aa19.94■□□□□ 0.78
CPSF1-204ENST00000529288 ARHGAP23Q9P227 1491 aa19.93■□□□□ 0.78
CPSF1-204ENST00000529288 PIK3C2BO00750 1634 aa19.93■□□□□ 0.78
CPSF1-204ENST00000529288 SLIT1O75093 1534 aa19.92■□□□□ 0.78
CPSF1-204ENST00000529288 LRRC7Q96NW7 1537 aa19.92■□□□□ 0.78
CPSF1-204ENST00000529288 SLC26A8Q96RN1 970 aa19.92■□□□□ 0.78
CPSF1-204ENST00000529288 CHGAP10645 457 aaKnown RBP19.91■□□□□ 0.78
CPSF1-204ENST00000529288 SLC52A1Q9NWF4 448 aa19.91■□□□□ 0.78
CPSF1-204ENST00000529288 EFCAB6Q5THR3 1501 aa19.9■□□□□ 0.78
CPSF1-204ENST00000529288 NOS1P29475 1434 aa19.89■□□□□ 0.77
CPSF1-204ENST00000529288 SYNMO15061 1565 aa19.87■□□□□ 0.77
CPSF1-204ENST00000529288 PPP1R15AO75807 674 aaPredicted RBP19.87■□□□□ 0.77
CPSF1-204ENST00000529288 STRCP1A6NGW2 1772 aa19.86■□□□□ 0.77
CPSF1-204ENST00000529288 RBM33Q96EV2 1170 aaKnown RBP19.86■□□□□ 0.77
CPSF1-204ENST00000529288 SOCS7O14512 581 aa19.85■□□□□ 0.77
CPSF1-204ENST00000529288 PROSER2Q86WR7 435 aaPredicted RBP19.84■□□□□ 0.77
CPSF1-204ENST00000529288 KCNA6P17658 529 aa19.83■□□□□ 0.77
CPSF1-204ENST00000529288 ROCK1Q13464 1354 aa19.83■□□□□ 0.76
CPSF1-204ENST00000529288 ADGRB3O60242 1522 aa19.82■□□□□ 0.76
CPSF1-204ENST00000529288 RPRD2Q5VT52 1461 aaKnown RBP19.82■□□□□ 0.76
CPSF1-204ENST00000529288 HDGFP51858 240 aaKnown RBP19.82■□□□□ 0.76
CPSF1-204ENST00000529288 NUTM2DQ5VT03 806 aaPredicted RBP19.82■□□□□ 0.76
CPSF1-204ENST00000529288 NUP155O75694 1391 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms