RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
CPSF1-204ENST00000529288 ABCC9O60706 1549 aa28.84■■■□□ 2.21
CPSF1-204ENST00000529288 CCDC180Q9P1Z9 1646 aa28.69■■■□□ 2.18
CPSF1-204ENST00000529288 DCAF8L2P0C7V8 631 aa27.42■■□□□ 1.98
CPSF1-204ENST00000529288 RB1CC1Q8TDY2 1594 aa27.37■■□□□ 1.97
CPSF1-204ENST00000529288 NACADO15069 1562 aa27.18■■□□□ 1.94
CPSF1-204ENST00000529288 DNAJC5BQ9UF47 199 aa26.99■■□□□ 1.91
CPSF1-204ENST00000529288 PABPN1Q86U42 306 aaKnown RBP eCLIP26.96■■□□□ 1.913e-8■■■□□ 16.3
CPSF1-204ENST00000529288 MYO15BQ96JP2 1530 aa26.75■■□□□ 1.87
CPSF1-204ENST00000529288 ZCCHC6Q5VYS8 1495 aaKnown RBP26.63■■□□□ 1.85
CPSF1-204ENST00000529288 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
CPSF1-204ENST00000529288 BICRAQ9NZM4 1560 aa26.53■■□□□ 1.84
CPSF1-204ENST00000529288 DCAF1Q9Y4B6 1507 aa26.47■■□□□ 1.83
CPSF1-204ENST00000529288 SCRIBQ14160 1630 aa26.32■■□□□ 1.8
CPSF1-204ENST00000529288 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
CPSF1-204ENST00000529288 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
CPSF1-204ENST00000529288 CECR2Q9BXF3 1484 aa25.93■■□□□ 1.74
CPSF1-204ENST00000529288 EIF4G1Q04637 1599 aaKnown RBP25.91■■□□□ 1.74
CPSF1-204ENST00000529288 NCAPD3P42695 1498 aa25.12■■□□□ 1.61
CPSF1-204ENST00000529288 ATAD2BQ9ULI0 1458 aa25.09■■□□□ 1.61
CPSF1-204ENST00000529288 SMARCA4P51532 1647 aa25.04■■□□□ 1.6
CPSF1-204ENST00000529288 SMARCA2P51531 1590 aa24.98■■□□□ 1.59
CPSF1-204ENST00000529288 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
CPSF1-204ENST00000529288 ERCC6Q03468 1493 aa24.9■■□□□ 1.58
CPSF1-204ENST00000529288 HMGXB3Q12766 1538 aa24.88■■□□□ 1.57
CPSF1-204ENST00000529288 BAZ1BQ9UIG0 1483 aaKnown RBP24.88■■□□□ 1.57
CPSF1-204ENST00000529288 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
CPSF1-204ENST00000529288 NESP48681 1621 aa24.77■■□□□ 1.56
CPSF1-204ENST00000529288 PEG3Q9GZU2 1588 aa24.71■■□□□ 1.55
CPSF1-204ENST00000529288 CUX2O14529 1486 aa24.71■■□□□ 1.55
CPSF1-204ENST00000529288 DNAJC5Q9H3Z4 198 aa24.7■■□□□ 1.54
CPSF1-204ENST00000529288 LAMC3Q9Y6N6 1575 aa24.51■■□□□ 1.51
CPSF1-204ENST00000529288 WIZO95785 1651 aa24.5■■□□□ 1.51
CPSF1-204ENST00000529288 PDS5BQ9NTI5 1447 aa24.46■■□□□ 1.51
CPSF1-204ENST00000529288 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
CPSF1-204ENST00000529288 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
CPSF1-204ENST00000529288 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
CPSF1-204ENST00000529288 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
CPSF1-204ENST00000529288 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
CPSF1-204ENST00000529288 TOP2AP11388 1531 aaKnown RBP24.17■■□□□ 1.46
CPSF1-204ENST00000529288 CEP164Q9UPV0 1460 aa24.15■■□□□ 1.46
CPSF1-204ENST00000529288 FANCD2Q9BXW9 1451 aa24.14■■□□□ 1.46
CPSF1-204ENST00000529288 CFTRP13569 1480 aa24.11■■□□□ 1.45
CPSF1-204ENST00000529288 WDR62O43379 1518 aa24.1■■□□□ 1.45
CPSF1-204ENST00000529288 CCDC88BA6NC98 1476 aa23.96■■□□□ 1.43
CPSF1-204ENST00000529288 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
CPSF1-204ENST00000529288 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
CPSF1-204ENST00000529288 OSCARQ8IYS5 282 aa23.74■■□□□ 1.39
CPSF1-204ENST00000529288 PRDM2Q13029 1718 aa23.71■■□□□ 1.39
CPSF1-204ENST00000529288 TOPBP1Q92547 1522 aa23.67■■□□□ 1.38
CPSF1-204ENST00000529288 IFT140Q96RY7 1462 aa23.66■■□□□ 1.38
CPSF1-204ENST00000529288 ZNF608Q9ULD9 1512 aaPredicted RBP23.64■■□□□ 1.37
CPSF1-204ENST00000529288 ABCC8Q09428 1581 aa23.61■■□□□ 1.37
CPSF1-204ENST00000529288 DNMBPQ6XZF7 1577 aa23.56■■□□□ 1.36
CPSF1-204ENST00000529288 SUPT5HO00267 1087 aaKnown RBP23.55■■□□□ 1.36
CPSF1-204ENST00000529288 AQRO60306 1485 aaKnown RBP eCLIP23.48■■□□□ 1.356e-6■■■■□ 23.2
CPSF1-204ENST00000529288 FBLN2P98095 1184 aa23.44■■□□□ 1.34
CPSF1-204ENST00000529288 EIF4G3O43432 1585 aaKnown RBP23.44■■□□□ 1.34
CPSF1-204ENST00000529288 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
CPSF1-204ENST00000529288 RAD54L2Q9Y4B4 1467 aa23.42■■□□□ 1.34
CPSF1-204ENST00000529288 SOGA1O94964 1423 aa23.4■■□□□ 1.34
CPSF1-204ENST00000529288 TARBP1Q13395 1621 aaKnown RBP23.38■■□□□ 1.33
CPSF1-204ENST00000529288 TDRD9Q8NDG6 1382 aaKnown RBP23.38■■□□□ 1.33
CPSF1-204ENST00000529288 FGD5Q6ZNL6 1462 aa23.32■■□□□ 1.32
CPSF1-204ENST00000529288 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
CPSF1-204ENST00000529288 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
CPSF1-204ENST00000529288 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
CPSF1-204ENST00000529288 CUX1P39880 1505 aa23.29■■□□□ 1.32
CPSF1-204ENST00000529288 ARHGEF11O15085 1522 aa23.25■■□□□ 1.31
CPSF1-204ENST00000529288 CYB5RLQ6IPT4 315 aa23.24■■□□□ 1.31
CPSF1-204ENST00000529288 CHMP7Q8WUX9 453 aaPredicted RBP23.22■■□□□ 1.31
CPSF1-204ENST00000529288 CHD1O14646 1710 aa23.22■■□□□ 1.31
CPSF1-204ENST00000529288 SNAPC4Q5SXM2 1469 aa23.21■■□□□ 1.31
CPSF1-204ENST00000529288 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
CPSF1-204ENST00000529288 WDR97A6NE52 1622 aa23.1■■□□□ 1.29
CPSF1-204ENST00000529288 MAGI1Q96QZ7 1491 aaPredicted RBP23.09■■□□□ 1.29
CPSF1-204ENST00000529288 GAPVD1Q14C86 1478 aa23.08■■□□□ 1.29
CPSF1-204ENST00000529288 ARAP1Q96P48 1450 aa23.04■■□□□ 1.28
CPSF1-204ENST00000529288 SYNJ2O15056 1496 aa23.03■■□□□ 1.28
CPSF1-204ENST00000529288 ABCA10Q8WWZ4 1543 aa23.02■■□□□ 1.28
CPSF1-204ENST00000529288 TRHP20396 242 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-204ENST00000529288 SYNJ1O43426 1573 aa23.01■■□□□ 1.27
CPSF1-204ENST00000529288 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
CPSF1-204ENST00000529288 CLASP1Q7Z460 1538 aa22.97■■□□□ 1.27
CPSF1-204ENST00000529288 PBRM1Q86U86 1689 aa22.96■■□□□ 1.27
CPSF1-204ENST00000529288 ABCA5Q8WWZ7 1642 aa22.92■■□□□ 1.26
CPSF1-204ENST00000529288 TOP2BQ02880 1626 aa22.9■■□□□ 1.26
CPSF1-204ENST00000529288 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
CPSF1-204ENST00000529288 GRIN2AQ12879 1464 aa22.82■■□□□ 1.24
CPSF1-204ENST00000529288 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
CPSF1-204ENST00000529288 ADAMTS12P58397 1594 aa22.78■■□□□ 1.24
CPSF1-204ENST00000529288 NUP160Q12769 1436 aa22.72■■□□□ 1.23
CPSF1-204ENST00000529288 ERICH3Q5RHP9 1530 aa22.72■■□□□ 1.23
CPSF1-204ENST00000529288 CEP170Q5SW79 1584 aa22.72■■□□□ 1.23
CPSF1-204ENST00000529288 ERCC6L2Q5T890 1561 aa22.68■■□□□ 1.22
CPSF1-204ENST00000529288 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
CPSF1-204ENST00000529288 PRG4Q92954 1404 aaPredicted RBP22.58■■□□□ 1.21
CPSF1-204ENST00000529288 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
CPSF1-204ENST00000529288 IGF1RP08069 1367 aa22.54■■□□□ 1.2
CPSF1-204ENST00000529288 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms