RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
CD44-227ENST00000528086 EIF2AK4Q9P2K8 1649 aaKnown RBP16.66■□□□□ 0.26
CD44-227ENST00000528086 DUOX2Q9NRD8 1548 aa16.65■□□□□ 0.26
CD44-227ENST00000528086 PPARGC1BQ86YN6 1023 aaKnown RBP16.64■□□□□ 0.25
CD44-227ENST00000528086 ESF1Q9H501 851 aaKnown RBP16.64■□□□□ 0.25
CD44-227ENST00000528086 KDM5DQ9BY66 1539 aa16.64■□□□□ 0.25
CD44-227ENST00000528086 MYO3AQ8NEV4 1616 aa16.63■□□□□ 0.25
CD44-227ENST00000528086 FBXO31Q5XUX0 539 aaPredicted RBP16.63■□□□□ 0.25
CD44-227ENST00000528086 ABCC3O15438 1527 aa16.63■□□□□ 0.25
CD44-227ENST00000528086 KIF15Q9NS87 1388 aa16.63■□□□□ 0.25
CD44-227ENST00000528086 ZNF142P52746 1687 aaPredicted RBP16.62■□□□□ 0.25
CD44-227ENST00000528086 FAM135AQ9P2D6 1515 aa16.62■□□□□ 0.25
CD44-227ENST00000528086 NCOA1Q15788 1441 aa16.62■□□□□ 0.25
CD44-227ENST00000528086 RRP7BPQ9NSQ0 103 aa16.61■□□□□ 0.25
CD44-227ENST00000528086 CEP152O94986 1710 aa16.61■□□□□ 0.25
CD44-227ENST00000528086 ADGRL2O95490 1459 aa16.61■□□□□ 0.25
CD44-227ENST00000528086 PZPP20742 1482 aa16.61■□□□□ 0.25
CD44-227ENST00000528086 CHIC2Q9UKJ5 165 aa16.6■□□□□ 0.25
CD44-227ENST00000528086 DEPDC5O75140 1603 aa16.59■□□□□ 0.25
CD44-227ENST00000528086 WASHC2CQ9Y4E1 1318 aa16.58■□□□□ 0.24
CD44-227ENST00000528086 PRDM15P57071 1507 aaPredicted RBP16.58■□□□□ 0.24
CD44-227ENST00000528086 CEP170BQ9Y4F5 1589 aaPredicted RBP16.58■□□□□ 0.24
CD44-227ENST00000528086 CFAP65Q6ZU64 1925 aaKnown RBP16.57■□□□□ 0.24
CD44-227ENST00000528086 CAMSAP1Q5T5Y3 1602 aa16.57■□□□□ 0.24
CD44-227ENST00000528086 ERBINQ96RT1 1412 aa16.57■□□□□ 0.24
CD44-227ENST00000528086 ILDR1Q86SU0 546 aaPredicted RBP16.57■□□□□ 0.24
CD44-227ENST00000528086 ZC3H13Q5T200 1668 aaKnown RBP16.56■□□□□ 0.24
CD44-227ENST00000528086 FAM50AQ14320 339 aaKnown RBP16.56■□□□□ 0.24
CD44-227ENST00000528086 VWDEQ8N2E2 1590 aa16.55■□□□□ 0.24
CD44-227ENST00000528086 TNRQ92752 1358 aa16.54■□□□□ 0.24
CD44-227ENST00000528086 SPATA31D1Q6ZQQ2 1576 aa16.54■□□□□ 0.24
CD44-227ENST00000528086 A2ML1A8K2U0 1454 aa16.54■□□□□ 0.24
CD44-227ENST00000528086 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
CD44-227ENST00000528086 ERVK-7P63135 1459 aa16.52■□□□□ 0.23
CD44-227ENST00000528086 PTPRTO14522 1441 aa16.51■□□□□ 0.23
CD44-227ENST00000528086 NCKAP5LQ9HCH0 1330 aa16.5■□□□□ 0.23
CD44-227ENST00000528086 PLA2R1Q13018 1463 aa16.5■□□□□ 0.23
CD44-227ENST00000528086 LMTK2Q8IWU2 1503 aa16.49■□□□□ 0.23
CD44-227ENST00000528086 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.49■□□□□ 0.23
CD44-227ENST00000528086 ARHGAP31Q2M1Z3 1444 aa16.48■□□□□ 0.23
CD44-227ENST00000528086 NEURL4Q96JN8 1562 aa16.47■□□□□ 0.23
CD44-227ENST00000528086 RRBP1Q9P2E9 1410 aaKnown RBP16.47■□□□□ 0.23
CD44-227ENST00000528086 ANKRD50Q9ULJ7 1429 aa16.47■□□□□ 0.23
CD44-227ENST00000528086 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.47■□□□□ 0.23
CD44-227ENST00000528086 LTBP4Q8N2S1 1624 aa16.47■□□□□ 0.23
CD44-227ENST00000528086 ROCK1Q13464 1354 aa16.45■□□□□ 0.22
CD44-227ENST00000528086 NLRP1Q9C000 1473 aa16.45■□□□□ 0.22
CD44-227ENST00000528086 UBR1Q8IWV7 1749 aa16.44■□□□□ 0.22
CD44-227ENST00000528086 UNC13BO14795 1591 aa16.43■□□□□ 0.22
CD44-227ENST00000528086 POLR1AO95602 1720 aaPredicted RBP16.43■□□□□ 0.22
CD44-227ENST00000528086 EFCAB6Q5THR3 1501 aa16.43■□□□□ 0.22
CD44-227ENST00000528086 SYNMO15061 1565 aa16.43■□□□□ 0.22
CD44-227ENST00000528086 UGGT1Q9NYU2 1555 aa16.43■□□□□ 0.22
CD44-227ENST00000528086 CERKQ8TCT0 537 aa16.42■□□□□ 0.22
CD44-227ENST00000528086 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
CD44-227ENST00000528086 NOS1P29475 1434 aa16.41■□□□□ 0.22
CD44-227ENST00000528086 ITGAEP38570 1179 aa16.4■□□□□ 0.22
CD44-227ENST00000528086 PKD2Q13563 968 aa16.4■□□□□ 0.22
CD44-227ENST00000528086 PIK3C2BO00750 1634 aa16.39■□□□□ 0.21
CD44-227ENST00000528086 FBXO41Q8TF61 875 aa16.39■□□□□ 0.21
CD44-227ENST00000528086 TET3O43151 1660 aa16.38■□□□□ 0.21
CD44-227ENST00000528086 ZNF335Q9H4Z2 1342 aaPredicted RBP16.38■□□□□ 0.21
CD44-227ENST00000528086 MED14O60244 1454 aa16.37■□□□□ 0.21
CD44-227ENST00000528086 IQGAP3Q86VI3 1631 aa16.37■□□□□ 0.21
CD44-227ENST00000528086 KANK1Q14678 1352 aa16.37■□□□□ 0.21
CD44-227ENST00000528086 E9PCH4 1651 aa16.37■□□□□ 0.21
CD44-227ENST00000528086 ARHGAP23Q9P227 1491 aa16.36■□□□□ 0.21
CD44-227ENST00000528086 GCC2Q8IWJ2 1684 aa16.36■□□□□ 0.21
CD44-227ENST00000528086 IDI1Q13907 227 aa16.35■□□□□ 0.21
CD44-227ENST00000528086 THEMISQ8N1K5 641 aaPredicted RBP16.35■□□□□ 0.21
CD44-227ENST00000528086 LTKP29376 864 aa16.34■□□□□ 0.21
CD44-227ENST00000528086 NAIPQ13075 1403 aa16.34■□□□□ 0.21
CD44-227ENST00000528086 SLIT1O75093 1534 aa16.34■□□□□ 0.21
CD44-227ENST00000528086 STRCP1A6NGW2 1772 aa16.33■□□□□ 0.21
CD44-227ENST00000528086 MYO5BQ9ULV0 1848 aa16.33■□□□□ 0.21
CD44-227ENST00000528086 KDM5AP29375 1690 aaKnown RBP16.32■□□□□ 0.2
CD44-227ENST00000528086 RPRD2Q5VT52 1461 aaKnown RBP16.32■□□□□ 0.2
CD44-227ENST00000528086 IQGAP1P46940 1657 aa16.31■□□□□ 0.2
CD44-227ENST00000528086 NPHP4O75161 1426 aaPredicted RBP16.31■□□□□ 0.2
CD44-227ENST00000528086 ANKLE2Q86XL3 938 aa16.31■□□□□ 0.2
CD44-227ENST00000528086 NUP155O75694 1391 aa16.28■□□□□ 0.2
CD44-227ENST00000528086 ADGRB3O60242 1522 aa16.28■□□□□ 0.2
CD44-227ENST00000528086 SCAF11Q99590 1463 aaKnown RBP16.28■□□□□ 0.2
CD44-227ENST00000528086 TMEM2Q9UHN6 1383 aa16.27■□□□□ 0.2
CD44-227ENST00000528086 TMEM131LA2VDJ0 1609 aa16.27■□□□□ 0.2
CD44-227ENST00000528086 IQSEC2Q5JU85 1478 aa16.25■□□□□ 0.19
CD44-227ENST00000528086 HFM1A2PYH4 1435 aa16.25■□□□□ 0.19
CD44-227ENST00000528086 TXNDC2Q86VQ3 553 aa16.24■□□□□ 0.19
CD44-227ENST00000528086 ZFYVE9O95405 1425 aa16.24■□□□□ 0.19
CD44-227ENST00000528086 SLC52A1Q9NWF4 448 aa16.23■□□□□ 0.19
CD44-227ENST00000528086 ALKQ9UM73 1620 aa16.23■□□□□ 0.19
CD44-227ENST00000528086 SPHKAPQ2M3C7 1700 aa16.21■□□□□ 0.19
CD44-227ENST00000528086 XIRP1Q702N8 1843 aaKnown RBP16.2■□□□□ 0.18
CD44-227ENST00000528086 CPS1P31327 1500 aa16.19■□□□□ 0.18
CD44-227ENST00000528086 LRRC7Q96NW7 1537 aa16.18■□□□□ 0.18
CD44-227ENST00000528086 CLTCL1P53675 1640 aa16.16■□□□□ 0.18
CD44-227ENST00000528086 STAG3Q9UJ98 1225 aa16.16■□□□□ 0.18
CD44-227ENST00000528086 RIMS2Q9UQ26 1411 aa16.16■□□□□ 0.18
CD44-227ENST00000528086 SLC26A8Q96RN1 970 aa16.14■□□□□ 0.17
CD44-227ENST00000528086 EID1Q9Y6B2 187 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms