RNA–Protein interactions for RNA: ENST00000509748.1

LIN54-208, Transcript of lin-54 DREAM MuvB core complex component, human

TSL 5

Gene LIN54, Length 729 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIN54-208	ENST00000509748	WASHC2C	Q9Y4E1	1318 aa		33.11	■■■□□ 2.89
LIN54-208	ENST00000509748	MYO3A	Q8NEV4	1616 aa		33.11	■■■□□ 2.89
LIN54-208	ENST00000509748	RNF17	Q9BXT8	1623 aa	Known RBP	33.11	■■■□□ 2.89
LIN54-208	ENST00000509748	SHANK2	Q9UPX8	1470 aa		33.11	■■■□□ 2.89
LIN54-208	ENST00000509748	NCOA1	Q15788	1441 aa		33.11	■■■□□ 2.89
LIN54-208	ENST00000509748	CROCC2	H7BZ55	1655 aa		33.1	■■■□□ 2.89
LIN54-208	ENST00000509748	FBXO41	Q8TF61	875 aa		33.09	■■■□□ 2.89
LIN54-208	ENST00000509748	ZNF142	P52746	1687 aa	Predicted RBP	33.08	■■■□□ 2.89
LIN54-208	ENST00000509748	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.08	■■■□□ 2.89
LIN54-208	ENST00000509748	DAPK1	P53355	1430 aa		33.08	■■■□□ 2.89
LIN54-208	ENST00000509748	DNMT1	P26358	1616 aa	Known RBP	33.07	■■■□□ 2.88
LIN54-208	ENST00000509748	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.07	■■■□□ 2.88
LIN54-208	ENST00000509748	PTPRT	O14522	1441 aa		33.07	■■■□□ 2.88
LIN54-208	ENST00000509748	DUOX2	Q9NRD8	1548 aa		33.07	■■■□□ 2.88
LIN54-208	ENST00000509748	CAMSAP1	Q5T5Y3	1602 aa		33.06	■■■□□ 2.88
LIN54-208	ENST00000509748	PZP	P20742	1482 aa		33.06	■■■□□ 2.88
LIN54-208	ENST00000509748	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.05	■■■□□ 2.88
LIN54-208	ENST00000509748	MROH1	Q8NDA8	1641 aa		33.04	■■■□□ 2.88
LIN54-208	ENST00000509748	KIF15	Q9NS87	1388 aa		33.03	■■■□□ 2.88
LIN54-208	ENST00000509748	RRP7BP	Q9NSQ0	103 aa		33.01	■■■□□ 2.87
LIN54-208	ENST00000509748	ABCC3	O15438	1527 aa		33.01	■■■□□ 2.87
LIN54-208	ENST00000509748	CERK	Q8TCT0	537 aa		33	■■■□□ 2.87
LIN54-208	ENST00000509748	TNR	Q92752	1358 aa		32.99	■■■□□ 2.87
LIN54-208	ENST00000509748	A2ML1	A8K2U0	1454 aa		32.99	■■■□□ 2.87
LIN54-208	ENST00000509748	PLA2R1	Q13018	1463 aa		32.97	■■■□□ 2.87
LIN54-208	ENST00000509748	NCKAP5L	Q9HCH0	1330 aa		32.97	■■■□□ 2.87
LIN54-208	ENST00000509748	ERBIN	Q96RT1	1412 aa		32.95	■■■□□ 2.87
LIN54-208	ENST00000509748	ZC3H13	Q5T200	1668 aa	Known RBP	32.95	■■■□□ 2.87
LIN54-208	ENST00000509748	CHIC2	Q9UKJ5	165 aa		32.94	■■■□□ 2.86
LIN54-208	ENST00000509748	PKD2	Q13563	968 aa		32.9	■■■□□ 2.86
LIN54-208	ENST00000509748	ANKRD30A	Q9BXX3	1397 aa		32.9	■■■□□ 2.86
LIN54-208	ENST00000509748	CEP152	O94986	1710 aa		32.89	■■■□□ 2.86
LIN54-208	ENST00000509748	PRDM15	P57071	1507 aa	Predicted RBP	32.88	■■■□□ 2.85
LIN54-208	ENST00000509748	FAM50A	Q14320	339 aa	Known RBP	32.88	■■■□□ 2.85
LIN54-208	ENST00000509748	SPATA31D1	Q6ZQQ2	1576 aa		32.86	■■■□□ 2.85
LIN54-208	ENST00000509748	ADGRL2	O95490	1459 aa		32.86	■■■□□ 2.85
LIN54-208	ENST00000509748	DEPDC5	O75140	1603 aa		32.85	■■■□□ 2.85
LIN54-208	ENST00000509748	LTBP4	Q8N2S1	1624 aa		32.85	■■■□□ 2.85
LIN54-208	ENST00000509748	NLRP1	Q9C000	1473 aa		32.85	■■■□□ 2.85
LIN54-208	ENST00000509748	ERVK-7	P63135	1459 aa		32.83	■■■□□ 2.85
LIN54-208	ENST00000509748	CFAP65	Q6ZU64	1925 aa	Known RBP	32.81	■■■□□ 2.84
LIN54-208	ENST00000509748	ARHGAP31	Q2M1Z3	1444 aa		32.79	■■■□□ 2.84
LIN54-208	ENST00000509748	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.79	■■■□□ 2.84
LIN54-208	ENST00000509748	UGGT1	Q9NYU2	1555 aa		32.76	■■■□□ 2.84
LIN54-208	ENST00000509748	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.76	■■■□□ 2.83
LIN54-208	ENST00000509748	VWDE	Q8N2E2	1590 aa		32.75	■■■□□ 2.83
LIN54-208	ENST00000509748	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.75	■■■□□ 2.83	8e-6	■□□□□ 8.4
LIN54-208	ENST00000509748	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.75	■■■□□ 2.83
LIN54-208	ENST00000509748	NEURL4	Q96JN8	1562 aa		32.74	■■■□□ 2.83
LIN54-208	ENST00000509748	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.73	■■■□□ 2.83
LIN54-208	ENST00000509748	LMTK2	Q8IWU2	1503 aa		32.72	■■■□□ 2.83
LIN54-208	ENST00000509748	KANK1	Q14678	1352 aa		32.71	■■■□□ 2.83
LIN54-208	ENST00000509748	POLR1A	O95602	1720 aa	Predicted RBP	32.71	■■■□□ 2.83
LIN54-208	ENST00000509748	ANKLE2	Q86XL3	938 aa		32.69	■■■□□ 2.82
LIN54-208	ENST00000509748	ANKRD50	Q9ULJ7	1429 aa		32.68	■■■□□ 2.82
LIN54-208	ENST00000509748	MED14	O60244	1454 aa		32.63	■■■□□ 2.81
LIN54-208	ENST00000509748	IQSEC2	Q5JU85	1478 aa		32.63	■■■□□ 2.81
LIN54-208	ENST00000509748	UBR1	Q8IWV7	1749 aa		32.63	■■■□□ 2.81
LIN54-208	ENST00000509748	ROCK1	Q13464	1354 aa		32.62	■■■□□ 2.81
LIN54-208	ENST00000509748	EFCAB6	Q5THR3	1501 aa		32.58	■■■□□ 2.81
LIN54-208	ENST00000509748	NPHP4	O75161	1426 aa	Predicted RBP	32.58	■■■□□ 2.81
LIN54-208	ENST00000509748	NOS1	P29475	1434 aa		32.55	■■■□□ 2.8
LIN54-208	ENST00000509748	ARHGAP23	Q9P227	1491 aa		32.54	■■■□□ 2.8
LIN54-208	ENST00000509748	PIK3C2B	O00750	1634 aa		32.53	■■■□□ 2.8
LIN54-208	ENST00000509748	SYNM	O15061	1565 aa		32.53	■■■□□ 2.8
LIN54-208	ENST00000509748	IDI1	Q13907	227 aa		32.52	■■■□□ 2.8
LIN54-208	ENST00000509748	SLIT1	O75093	1534 aa		32.51	■■■□□ 2.8
LIN54-208	ENST00000509748	UNC13B	O14795	1591 aa		32.51	■■■□□ 2.79
LIN54-208	ENST00000509748	ITGAE	P38570	1179 aa		32.51	■■■□□ 2.79
LIN54-208	ENST00000509748	IQGAP1	P46940	1657 aa		32.5	■■■□□ 2.79
LIN54-208	ENST00000509748	LTK	P29376	864 aa		32.5	■■■□□ 2.79
LIN54-208	ENST00000509748	RRBP1	Q9P2E9	1410 aa	Known RBP	32.47	■■■□□ 2.79
LIN54-208	ENST00000509748	RPRD2	Q5VT52	1461 aa	Known RBP	32.47	■■■□□ 2.79
LIN54-208	ENST00000509748	SCAF11	Q99590	1463 aa	Known RBP	32.47	■■■□□ 2.79
LIN54-208	ENST00000509748	TET3	O43151	1660 aa		32.46	■■■□□ 2.79
LIN54-208	ENST00000509748	KDM5A	P29375	1690 aa	Known RBP	32.44	■■■□□ 2.78
LIN54-208	ENST00000509748	TXNDC2	Q86VQ3	553 aa		32.44	■■■□□ 2.78
LIN54-208	ENST00000509748	CPS1	P31327	1500 aa		32.43	■■■□□ 2.78
LIN54-208	ENST00000509748	TMEM2	Q9UHN6	1383 aa		32.43	■■■□□ 2.78
LIN54-208	ENST00000509748	SLC52A1	Q9NWF4	448 aa		32.41	■■■□□ 2.78
LIN54-208	ENST00000509748	GCC2	Q8IWJ2	1684 aa		32.4	■■■□□ 2.78
LIN54-208	ENST00000509748	STAG3	Q9UJ98	1225 aa		32.39	■■■□□ 2.78
LIN54-208	ENST00000509748	IQGAP3	Q86VI3	1631 aa		32.38	■■■□□ 2.77
LIN54-208	ENST00000509748	STRCP1	A6NGW2	1772 aa		32.37	■■■□□ 2.77
LIN54-208	ENST00000509748	UBAP1L	F5GYI3	381 aa		32.36	■■■□□ 2.77
LIN54-208	ENST00000509748	EID1	Q9Y6B2	187 aa		32.36	■■■□□ 2.77
LIN54-208	ENST00000509748	ADGRB3	O60242	1522 aa		32.36	■■■□□ 2.77
LIN54-208	ENST00000509748		E9PCH4	1651 aa		32.35	■■■□□ 2.77
LIN54-208	ENST00000509748	NUP155	O75694	1391 aa		32.34	■■■□□ 2.77
LIN54-208	ENST00000509748	LRRC7	Q96NW7	1537 aa		32.26	■■■□□ 2.76
LIN54-208	ENST00000509748	MYO5B	Q9ULV0	1848 aa		32.26	■■■□□ 2.76
LIN54-208	ENST00000509748	TMEM131L	A2VDJ0	1609 aa		32.25	■■■□□ 2.75
LIN54-208	ENST00000509748	NAIP	Q13075	1403 aa		32.25	■■■□□ 2.75
LIN54-208	ENST00000509748	ZFYVE9	O95405	1425 aa		32.23	■■■□□ 2.75
LIN54-208	ENST00000509748	ALK	Q9UM73	1620 aa		32.2	■■■□□ 2.75
LIN54-208	ENST00000509748	TOM1	O60784	492 aa		32.18	■■■□□ 2.74
LIN54-208	ENST00000509748	SLC26A8	Q96RN1	970 aa		32.17	■■■□□ 2.74
LIN54-208	ENST00000509748	RIMS2	Q9UQ26	1411 aa		32.17	■■■□□ 2.74
LIN54-208	ENST00000509748	HFM1	A2PYH4	1435 aa		32.13	■■■□□ 2.73
LIN54-208	ENST00000509748	CHGA	P10645	457 aa	Known RBP	32.12	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms