RNA–Protein interactions for RNA: ENST00000509748.1

LIN54-208, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 5

Gene LIN54, Length 729 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-208ENST00000509748 NISCHQ9Y2I1 1504 aa52.64■■■■■ 6.02
LIN54-208ENST00000509748 CCDC180Q9P1Z9 1646 aa46.97■■■■■ 5.11
LIN54-208ENST00000509748 ABCC9O60706 1549 aa46.54■■■■■ 5.04
LIN54-208ENST00000509748 RB1CC1Q8TDY2 1594 aa44.48■■■■■ 4.71
LIN54-208ENST00000509748 NACADO15069 1562 aa44.31■■■■■ 4.68
LIN54-208ENST00000509748 DCAF8L2P0C7V8 631 aa44.15■■■■■ 4.66
LIN54-208ENST00000509748 MYO15BQ96JP2 1530 aa43.9■■■■■ 4.62
LIN54-208ENST00000509748 ZCCHC6Q5VYS8 1495 aaKnown RBP43.71■■■■■ 4.59
LIN54-208ENST00000509748 UNC13AQ9UPW8 1703 aa43.53■■■■■ 4.56
LIN54-208ENST00000509748 DCAF1Q9Y4B6 1507 aa43.51■■■■■ 4.56
LIN54-208ENST00000509748 PABPN1Q86U42 306 aaKnown RBP eCLIP43.43■■■■■ 4.54
LIN54-208ENST00000509748 DNAJC5BQ9UF47 199 aa43.36■■■■■ 4.53
LIN54-208ENST00000509748 BICRAQ9NZM4 1560 aa43.26■■■■■ 4.52
LIN54-208ENST00000509748 SCRIBQ14160 1630 aa42.82■■■■■ 4.45
LIN54-208ENST00000509748 SHROOM4Q9ULL8 1493 aa42.64■■■■■ 4.42
LIN54-208ENST00000509748 EIF4G1Q04637 1599 aaKnown RBP42.1■■■■■ 4.33
LIN54-208ENST00000509748 CC2D2AQ9P2K1 1620 aa42.07■■■■■ 4.33
LIN54-208ENST00000509748 CECR2Q9BXF3 1484 aa41.87■■■■■ 4.29
LIN54-208ENST00000509748 NCAPD3P42695 1498 aa40.96■■■■■ 4.15
LIN54-208ENST00000509748 SMARCA4P51532 1647 aa40.93■■■■■ 4.14
LIN54-208ENST00000509748 ATAD2BQ9ULI0 1458 aa40.89■■■■■ 4.14
LIN54-208ENST00000509748 BAZ1AQ9NRL2 1556 aaPredicted RBP40.78■■■■■ 4.12
LIN54-208ENST00000509748 SMARCA2P51531 1590 aa40.74■■■■■ 4.11
LIN54-208ENST00000509748 HMGXB3Q12766 1538 aa40.65■■■■■ 4.1
LIN54-208ENST00000509748 MROH2BQ7Z745 1585 aa40.57■■■■■ 4.09
LIN54-208ENST00000509748 PEG3Q9GZU2 1588 aa40.57■■■■■ 4.08
LIN54-208ENST00000509748 BAZ1BQ9UIG0 1483 aaKnown RBP40.45■■■■■ 4.07
LIN54-208ENST00000509748 NESP48681 1621 aa40.15■■■■■ 4.02
LIN54-208ENST00000509748 WIZO95785 1651 aa40.09■■■■■ 4.01
LIN54-208ENST00000509748 ERCC6Q03468 1493 aa40.08■■■■■ 4.01
LIN54-208ENST00000509748 RSF1Q96T23 1441 aaPredicted RBP39.92■■■■□ 3.98
LIN54-208ENST00000509748 CUX2O14529 1486 aa39.9■■■■□ 3.98
LIN54-208ENST00000509748 LAMC3Q9Y6N6 1575 aa39.89■■■■□ 3.98
LIN54-208ENST00000509748 CADPSQ9ULU8 1353 aa39.72■■■■□ 3.95
LIN54-208ENST00000509748 PDS5BQ9NTI5 1447 aa39.65■■■■□ 3.94
LIN54-208ENST00000509748 THOC2Q8NI27 1593 aaKnown RBP39.62■■■■□ 3.93
LIN54-208ENST00000509748 KIF21AQ7Z4S6 1674 aa39.6■■■■□ 3.93
LIN54-208ENST00000509748 TOP2AP11388 1531 aaKnown RBP39.6■■■■□ 3.93
LIN54-208ENST00000509748 DNAJC5Q9H3Z4 198 aa39.41■■■■□ 3.9
LIN54-208ENST00000509748 CFTRP13569 1480 aa39.37■■■■□ 3.89
LIN54-208ENST00000509748 MRC2Q9UBG0 1479 aa39.28■■■■□ 3.88
LIN54-208ENST00000509748 FANCD2Q9BXW9 1451 aa39.24■■■■□ 3.87
LIN54-208ENST00000509748 CEP164Q9UPV0 1460 aa39.2■■■■□ 3.87
LIN54-208ENST00000509748 WDR62O43379 1518 aa39.19■■■■□ 3.86
LIN54-208ENST00000509748 CCDC88BA6NC98 1476 aa39.18■■■■□ 3.86
LIN54-208ENST00000509748 PRDM2Q13029 1718 aa38.95■■■■□ 3.83
LIN54-208ENST00000509748 URB2Q14146 1524 aaKnown RBP38.92■■■■□ 3.82
LIN54-208ENST00000509748 TOPBP1Q92547 1522 aa38.56■■■■□ 3.76
LIN54-208ENST00000509748 ABCC8Q09428 1581 aa38.48■■■■□ 3.75
LIN54-208ENST00000509748 SUPT5HO00267 1087 aaKnown RBP38.44■■■■□ 3.74
LIN54-208ENST00000509748 DNMBPQ6XZF7 1577 aa38.44■■■■□ 3.74
LIN54-208ENST00000509748 IFT140Q96RY7 1462 aa38.42■■■■□ 3.74
LIN54-208ENST00000509748 ZNF608Q9ULD9 1512 aaPredicted RBP38.36■■■■□ 3.73
LIN54-208ENST00000509748 TARBP1Q13395 1621 aaKnown RBP38.2■■■■□ 3.71
LIN54-208ENST00000509748 POLA1P09884 1462 aaPredicted RBP38.2■■■■□ 3.71
LIN54-208ENST00000509748 OSCARQ8IYS5 282 aa38.18■■■■□ 3.7
LIN54-208ENST00000509748 EIF4G3O43432 1585 aaKnown RBP38.11■■■■□ 3.69
LIN54-208ENST00000509748 CUX1P39880 1505 aa38.08■■■■□ 3.69
LIN54-208ENST00000509748 AQRO60306 1485 aaKnown RBP eCLIP38.07■■■■□ 3.68
LIN54-208ENST00000509748 RAD54L2Q9Y4B4 1467 aa38.07■■■■□ 3.68
LIN54-208ENST00000509748 SOGA1O94964 1423 aa38.03■■■■□ 3.68
LIN54-208ENST00000509748 FGD5Q6ZNL6 1462 aa38.02■■■■□ 3.68
LIN54-208ENST00000509748 TDRD9Q8NDG6 1382 aaKnown RBP37.91■■■■□ 3.66
LIN54-208ENST00000509748 WDR97A6NE52 1622 aa37.79■■■■□ 3.64
LIN54-208ENST00000509748 TRIM41Q8WV44 630 aa37.78■■■■□ 3.64
LIN54-208ENST00000509748 CHD1O14646 1710 aa37.75■■■■□ 3.63
LIN54-208ENST00000509748 SNAPC4Q5SXM2 1469 aa37.65■■■■□ 3.62
LIN54-208ENST00000509748 FBLN2P98095 1184 aa37.65■■■■□ 3.62
LIN54-208ENST00000509748 ABCA10Q8WWZ4 1543 aa37.63■■■■□ 3.61
LIN54-208ENST00000509748 GRIN2BQ13224 1484 aa37.63■■■■□ 3.61
LIN54-208ENST00000509748 RIMBP3CA6NJZ7 1639 aa37.61■■■■□ 3.61
LIN54-208ENST00000509748 RIMBP3BA6NNM3 1639 aa37.61■■■■□ 3.61
LIN54-208ENST00000509748 RIMBP3Q9UFD9 1639 aa37.61■■■■□ 3.61
LIN54-208ENST00000509748 WRNQ14191 1432 aaPredicted RBP eCLIP37.6■■■■□ 3.61
LIN54-208ENST00000509748 MAGI1Q96QZ7 1491 aaPredicted RBP37.58■■■■□ 3.61
LIN54-208ENST00000509748 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
LIN54-208ENST00000509748 BIVM-ERCC5R4GMW8 1640 aa37.58■■■■□ 3.61
LIN54-208ENST00000509748 GAPVD1Q14C86 1478 aa37.57■■■■□ 3.6
LIN54-208ENST00000509748 SYNJ1O43426 1573 aa37.56■■■■□ 3.6
LIN54-208ENST00000509748 ARHGEF11O15085 1522 aa37.56■■■■□ 3.6
LIN54-208ENST00000509748 ABCA5Q8WWZ7 1642 aa37.52■■■■□ 3.6
LIN54-208ENST00000509748 PBRM1Q86U86 1689 aa37.49■■■■□ 3.59
LIN54-208ENST00000509748 CHMP7Q8WUX9 453 aaPredicted RBP37.47■■■■□ 3.59
LIN54-208ENST00000509748 SYNJ2O15056 1496 aa37.45■■■■□ 3.59
LIN54-208ENST00000509748 CLASP1Q7Z460 1538 aa37.36■■■■□ 3.57
LIN54-208ENST00000509748 CYB5RLQ6IPT4 315 aa37.25■■■■□ 3.55
LIN54-208ENST00000509748 ARAP1Q96P48 1450 aa37.24■■■■□ 3.55
LIN54-208ENST00000509748 ADAMTS12P58397 1594 aa37.18■■■■□ 3.54
LIN54-208ENST00000509748 GRIN2AQ12879 1464 aa37.14■■■■□ 3.54
LIN54-208ENST00000509748 ERICH3Q5RHP9 1530 aa37.14■■■■□ 3.54
LIN54-208ENST00000509748 FHAD1B1AJZ9 1412 aa37.1■■■■□ 3.53
LIN54-208ENST00000509748 NUP160Q12769 1436 aa37.04■■■■□ 3.52
LIN54-208ENST00000509748 CEP170Q5SW79 1584 aa37.01■■■■□ 3.52
LIN54-208ENST00000509748 IGF1RP08069 1367 aa36.85■■■■□ 3.49
LIN54-208ENST00000509748 ERCC6L2Q5T890 1561 aa36.84■■■■□ 3.49
LIN54-208ENST00000509748 KIF27Q86VH2 1401 aa36.84■■■■□ 3.49
LIN54-208ENST00000509748 SHROOM2Q13796 1616 aa36.81■■■■□ 3.48
LIN54-208ENST00000509748 JPH4Q96JJ6 628 aa36.66■■■■□ 3.46
LIN54-208ENST00000509748 CUL7Q14999 1698 aa36.66■■■■□ 3.46
LIN54-208ENST00000509748 RUSC2Q8N2Y8 1516 aa36.64■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms