RNA–Protein interactions for RNA: ENST00000508500.1

LMNA-222, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 848 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-222ENST00000508500 PLA2R1Q13018 1463 aa25.59■■□□□ 1.69
LMNA-222ENST00000508500 KIF3BO15066 747 aa25.58■■□□□ 1.69
LMNA-222ENST00000508500 TCOF1Q13428 1488 aaKnown RBP25.58■■□□□ 1.69
LMNA-222ENST00000508500 TSPY4P0CV99 314 aa25.57■■□□□ 1.68
LMNA-222ENST00000508500 TSPY10P0CW01 314 aa25.57■■□□□ 1.68
LMNA-222ENST00000508500 CROCC2H7BZ55 1655 aa25.53■■□□□ 1.68
LMNA-222ENST00000508500 KDM5DQ9BY66 1539 aa25.53■■□□□ 1.68
LMNA-222ENST00000508500 PTPN23Q9H3S7 1636 aa25.52■■□□□ 1.68
LMNA-222ENST00000508500 RNF17Q9BXT8 1623 aaKnown RBP25.52■■□□□ 1.68
LMNA-222ENST00000508500 FAM135AQ9P2D6 1515 aa25.51■■□□□ 1.67
LMNA-222ENST00000508500 DNMT1P26358 1616 aaKnown RBP25.51■■□□□ 1.67
LMNA-222ENST00000508500 EIF2AK4Q9P2K8 1649 aaKnown RBP25.48■■□□□ 1.67
LMNA-222ENST00000508500 NCKAP5LQ9HCH0 1330 aa25.48■■□□□ 1.67
LMNA-222ENST00000508500 APLP2Q06481 763 aa25.48■■□□□ 1.67
LMNA-222ENST00000508500 FBXO31Q5XUX0 539 aaPredicted RBP25.48■■□□□ 1.67
LMNA-222ENST00000508500 MROH1Q8NDA8 1641 aa25.48■■□□□ 1.67
LMNA-222ENST00000508500 A2ML1A8K2U0 1454 aa25.47■■□□□ 1.67
LMNA-222ENST00000508500 ABCC5O15440 1437 aa25.46■■□□□ 1.67
LMNA-222ENST00000508500 PZPP20742 1482 aa25.46■■□□□ 1.67
LMNA-222ENST00000508500 CFAP65Q6ZU64 1925 aaKnown RBP25.45■■□□□ 1.67
LMNA-222ENST00000508500 PKD2Q13563 968 aa25.45■■□□□ 1.66
LMNA-222ENST00000508500 POLR1AO95602 1720 aaPredicted RBP25.45■■□□□ 1.66
LMNA-222ENST00000508500 WASHC2CQ9Y4E1 1318 aa25.44■■□□□ 1.66
LMNA-222ENST00000508500 FGD6Q6ZV73 1430 aa25.44■■□□□ 1.66
LMNA-222ENST00000508500 CEP152O94986 1710 aa25.43■■□□□ 1.66
LMNA-222ENST00000508500 NEURL4Q96JN8 1562 aa25.43■■□□□ 1.66
LMNA-222ENST00000508500 ZC3H13Q5T200 1668 aaKnown RBP25.42■■□□□ 1.66
LMNA-222ENST00000508500 ZNF335Q9H4Z2 1342 aaPredicted RBP25.42■■□□□ 1.66
LMNA-222ENST00000508500 ABCC3O15438 1527 aa25.42■■□□□ 1.66
LMNA-222ENST00000508500 DUOX2Q9NRD8 1548 aa25.42■■□□□ 1.66
LMNA-222ENST00000508500 SHANK2Q9UPX8 1470 aa25.41■■□□□ 1.66
LMNA-222ENST00000508500 TNRQ92752 1358 aa25.4■■□□□ 1.66
LMNA-222ENST00000508500 DAPK1P53355 1430 aa25.39■■□□□ 1.66
LMNA-222ENST00000508500 SPATA31D1Q6ZQQ2 1576 aa25.36■■□□□ 1.65
LMNA-222ENST00000508500 ILDR2Q71H61 639 aa25.36■■□□□ 1.65
LMNA-222ENST00000508500 KIF15Q9NS87 1388 aa25.35■■□□□ 1.65
LMNA-222ENST00000508500 DISP3Q9P2K9 1392 aa25.33■■□□□ 1.65
LMNA-222ENST00000508500 RRP7BPQ9NSQ0 103 aa25.33■■□□□ 1.65
LMNA-222ENST00000508500 DEPDC5O75140 1603 aa25.32■■□□□ 1.64
LMNA-222ENST00000508500 PRDM15P57071 1507 aaPredicted RBP25.31■■□□□ 1.64
LMNA-222ENST00000508500 ERBINQ96RT1 1412 aa25.3■■□□□ 1.64
LMNA-222ENST00000508500 NLRP1Q9C000 1473 aa25.28■■□□□ 1.64
LMNA-222ENST00000508500 CHIC2Q9UKJ5 165 aa25.28■■□□□ 1.64
LMNA-222ENST00000508500 ERVK-7P63135 1459 aa25.28■■□□□ 1.64
LMNA-222ENST00000508500 MED14O60244 1454 aa25.27■■□□□ 1.64
LMNA-222ENST00000508500 VWDEQ8N2E2 1590 aa25.27■■□□□ 1.64
LMNA-222ENST00000508500 UGGT1Q9NYU2 1555 aa25.27■■□□□ 1.64
LMNA-222ENST00000508500 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.25■■□□□ 1.63
LMNA-222ENST00000508500 CPS1P31327 1500 aa25.24■■□□□ 1.63
LMNA-222ENST00000508500 ADGRL2O95490 1459 aa25.22■■□□□ 1.63
LMNA-222ENST00000508500 ANKRD30AQ9BXX3 1397 aa25.22■■□□□ 1.63
LMNA-222ENST00000508500 UBR1Q8IWV7 1749 aa25.22■■□□□ 1.63
LMNA-222ENST00000508500 UBAP1LF5GYI3 381 aa25.21■■□□□ 1.63
LMNA-222ENST00000508500 ALKQ9UM73 1620 aa25.21■■□□□ 1.63
LMNA-222ENST00000508500 ARHGAP31Q2M1Z3 1444 aa25.2■■□□□ 1.63
LMNA-222ENST00000508500 STRCP1A6NGW2 1772 aa25.2■■□□□ 1.62
LMNA-222ENST00000508500 IQGAP1P46940 1657 aa25.2■■□□□ 1.62
LMNA-222ENST00000508500 THEMISQ8N1K5 641 aaPredicted RBP25.19■■□□□ 1.62
LMNA-222ENST00000508500 SOCS7O14512 581 aa25.18■■□□□ 1.62
LMNA-222ENST00000508500 FAM50AQ14320 339 aaKnown RBP25.18■■□□□ 1.62
LMNA-222ENST00000508500 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.18■■□□□ 1.621e-7■□□□□ 10.9
LMNA-222ENST00000508500 LMTK2Q8IWU2 1503 aa25.16■■□□□ 1.62
LMNA-222ENST00000508500 NPHP4O75161 1426 aaPredicted RBP25.15■■□□□ 1.62
LMNA-222ENST00000508500 ANKLE2Q86XL3 938 aa25.15■■□□□ 1.62
LMNA-222ENST00000508500 PIK3C2BO00750 1634 aa25.12■■□□□ 1.61
LMNA-222ENST00000508500 KANK1Q14678 1352 aa25.1■■□□□ 1.61
LMNA-222ENST00000508500 PPARGC1BQ86YN6 1023 aaKnown RBP25.08■■□□□ 1.61
LMNA-222ENST00000508500 SYNMO15061 1565 aa25.08■■□□□ 1.61
LMNA-222ENST00000508500 EFCAB6Q5THR3 1501 aa25.07■■□□□ 1.6
LMNA-222ENST00000508500 ANKRD50Q9ULJ7 1429 aa25.07■■□□□ 1.6
LMNA-222ENST00000508500 ARHGAP23Q9P227 1491 aa25.07■■□□□ 1.6
LMNA-222ENST00000508500 SLIT1O75093 1534 aa25.06■■□□□ 1.6
LMNA-222ENST00000508500 LRRC7Q96NW7 1537 aa25.03■■□□□ 1.6
LMNA-222ENST00000508500 KDM5AP29375 1690 aaKnown RBP25.03■■□□□ 1.6
LMNA-222ENST00000508500 NOS1P29475 1434 aa25.03■■□□□ 1.6
LMNA-222ENST00000508500 XIRP1Q702N8 1843 aaKnown RBP25.02■■□□□ 1.6
LMNA-222ENST00000508500 UNC13BO14795 1591 aa25.02■■□□□ 1.6
LMNA-222ENST00000508500 MED1Q15648 1581 aaPredicted RBP25.02■■□□□ 1.6
LMNA-222ENST00000508500 LTKP29376 864 aa25.02■■□□□ 1.6
LMNA-222ENST00000508500 HSPA1LP34931 641 aa25.02■■□□□ 1.6
LMNA-222ENST00000508500 TET3O43151 1660 aa25.01■■□□□ 1.59
LMNA-222ENST00000508500 MYO5BQ9ULV0 1848 aa25■■□□□ 1.59
LMNA-222ENST00000508500 TOM1O60784 492 aa25■■□□□ 1.59
LMNA-222ENST00000508500 IDI1Q13907 227 aa25■■□□□ 1.59
LMNA-222ENST00000508500 SCAF11Q99590 1463 aaKnown RBP25■■□□□ 1.59
LMNA-222ENST00000508500 GCC2Q8IWJ2 1684 aa25■■□□□ 1.59
LMNA-222ENST00000508500 ROCK1Q13464 1354 aa24.97■■□□□ 1.59
LMNA-222ENST00000508500 PIP4K2BP78356 416 aa24.95■■□□□ 1.58
LMNA-222ENST00000508500 TXNDC2Q86VQ3 553 aa24.95■■□□□ 1.58
LMNA-222ENST00000508500 E9PCH4 1651 aa24.94■■□□□ 1.58
LMNA-222ENST00000508500 TMEM2Q9UHN6 1383 aa24.93■■□□□ 1.58
LMNA-222ENST00000508500 RPRD2Q5VT52 1461 aaKnown RBP24.93■■□□□ 1.58
LMNA-222ENST00000508500 IQGAP3Q86VI3 1631 aa24.92■■□□□ 1.58
LMNA-222ENST00000508500 ADGRB3O60242 1522 aa24.91■■□□□ 1.58
LMNA-222ENST00000508500 ITGAEP38570 1179 aa24.91■■□□□ 1.58
LMNA-222ENST00000508500 STAG3Q9UJ98 1225 aa24.89■■□□□ 1.58
LMNA-222ENST00000508500 SCAF1Q9H7N4 1312 aaKnown RBP24.88■■□□□ 1.57
LMNA-222ENST00000508500 SLC52A1Q9NWF4 448 aa24.87■■□□□ 1.57
LMNA-222ENST00000508500 EID1Q9Y6B2 187 aa24.87■■□□□ 1.57
LMNA-222ENST00000508500 TMEM131LA2VDJ0 1609 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms