RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 NCOA1Q15788 1441 aa22.49■■□□□ 1.19
VTI1A-209ENST00000496445 CAMSAP1Q5T5Y3 1602 aa22.49■■□□□ 1.19
VTI1A-209ENST00000496445 KIF3BO15066 747 aa22.47■■□□□ 1.19
VTI1A-209ENST00000496445 TSPY4P0CV99 314 aa22.47■■□□□ 1.19
VTI1A-209ENST00000496445 TSPY10P0CW01 314 aa22.47■■□□□ 1.19
VTI1A-209ENST00000496445 FBXO41Q8TF61 875 aa22.47■■□□□ 1.19
VTI1A-209ENST00000496445 MROH1Q8NDA8 1641 aa22.46■■□□□ 1.19
VTI1A-209ENST00000496445 SHANK2Q9UPX8 1470 aa22.45■■□□□ 1.18
VTI1A-209ENST00000496445 DNMT1P26358 1616 aaKnown RBP22.45■■□□□ 1.18
VTI1A-209ENST00000496445 PTPRTO14522 1441 aa22.44■■□□□ 1.18
VTI1A-209ENST00000496445 PZPP20742 1482 aa22.44■■□□□ 1.18
VTI1A-209ENST00000496445 APLP2Q06481 763 aa22.44■■□□□ 1.18
VTI1A-209ENST00000496445 TCOF1Q13428 1488 aaKnown RBP22.44■■□□□ 1.18
VTI1A-209ENST00000496445 ZC3H13Q5T200 1668 aaKnown RBP22.44■■□□□ 1.18
VTI1A-209ENST00000496445 FGD6Q6ZV73 1430 aa22.43■■□□□ 1.18
VTI1A-209ENST00000496445 ABCC5O15440 1437 aa22.41■■□□□ 1.18
VTI1A-209ENST00000496445 ABCC3O15438 1527 aa22.41■■□□□ 1.18
VTI1A-209ENST00000496445 DUOX2Q9NRD8 1548 aa22.41■■□□□ 1.18
VTI1A-209ENST00000496445 DMRT2Q9Y5R5 561 aa22.4■■□□□ 1.18
VTI1A-209ENST00000496445 PLA2R1Q13018 1463 aa22.4■■□□□ 1.18
VTI1A-209ENST00000496445 CEP152O94986 1710 aa22.4■■□□□ 1.18
VTI1A-209ENST00000496445 A2ML1A8K2U0 1454 aa22.39■■□□□ 1.17
VTI1A-209ENST00000496445 DAPK1P53355 1430 aa22.39■■□□□ 1.17
VTI1A-209ENST00000496445 WASHC2CQ9Y4E1 1318 aa22.37■■□□□ 1.17
VTI1A-209ENST00000496445 CERKQ8TCT0 537 aa22.37■■□□□ 1.17
VTI1A-209ENST00000496445 TNRQ92752 1358 aa22.36■■□□□ 1.17
VTI1A-209ENST00000496445 FBXO31Q5XUX0 539 aaPredicted RBP22.35■■□□□ 1.17
VTI1A-209ENST00000496445 PRDM15P57071 1507 aaPredicted RBP22.35■■□□□ 1.17
VTI1A-209ENST00000496445 LTBP4Q8N2S1 1624 aa22.35■■□□□ 1.17
VTI1A-209ENST00000496445 DEPDC5O75140 1603 aa22.34■■□□□ 1.17
VTI1A-209ENST00000496445 KIF15Q9NS87 1388 aa22.34■■□□□ 1.17
VTI1A-209ENST00000496445 POLR1AO95602 1720 aaPredicted RBP22.34■■□□□ 1.17
VTI1A-209ENST00000496445 ERBINQ96RT1 1412 aa22.33■■□□□ 1.17
VTI1A-209ENST00000496445 SPATA31D1Q6ZQQ2 1576 aa22.32■■□□□ 1.16
VTI1A-209ENST00000496445 NCKAP5LQ9HCH0 1330 aa22.31■■□□□ 1.16
VTI1A-209ENST00000496445 NEURL4Q96JN8 1562 aa22.29■■□□□ 1.16
VTI1A-209ENST00000496445 NLRP1Q9C000 1473 aa22.28■■□□□ 1.16
VTI1A-209ENST00000496445 ERVK-7P63135 1459 aa22.28■■□□□ 1.16
VTI1A-209ENST00000496445 CFAP65Q6ZU64 1925 aaKnown RBP22.25■■□□□ 1.15
VTI1A-209ENST00000496445 PKD2Q13563 968 aa22.25■■□□□ 1.15
VTI1A-209ENST00000496445 RRP7BPQ9NSQ0 103 aa22.25■■□□□ 1.15
VTI1A-209ENST00000496445 ADGRL2O95490 1459 aa22.25■■□□□ 1.15
VTI1A-209ENST00000496445 UGGT1Q9NYU2 1555 aa22.25■■□□□ 1.15
VTI1A-209ENST00000496445 VWDEQ8N2E2 1590 aa22.22■■□□□ 1.15
VTI1A-209ENST00000496445 ANKRD30AQ9BXX3 1397 aa22.22■■□□□ 1.15
VTI1A-209ENST00000496445 CHIC2Q9UKJ5 165 aa22.21■■□□□ 1.15
VTI1A-209ENST00000496445 IQSEC2Q5JU85 1478 aa22.21■■□□□ 1.15
VTI1A-209ENST00000496445 UBR1Q8IWV7 1749 aa22.2■■□□□ 1.14
VTI1A-209ENST00000496445 ARHGAP31Q2M1Z3 1444 aa22.2■■□□□ 1.14
VTI1A-209ENST00000496445 ZNF335Q9H4Z2 1342 aaPredicted RBP22.19■■□□□ 1.14
VTI1A-209ENST00000496445 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.19■■□□□ 1.14
VTI1A-209ENST00000496445 LMTK2Q8IWU2 1503 aa22.18■■□□□ 1.14
VTI1A-209ENST00000496445 FAM50AQ14320 339 aaKnown RBP22.16■■□□□ 1.14
VTI1A-209ENST00000496445 IQGAP1P46940 1657 aa22.14■■□□□ 1.14
VTI1A-209ENST00000496445 MED14O60244 1454 aa22.14■■□□□ 1.13
VTI1A-209ENST00000496445 EFCAB6Q5THR3 1501 aa22.13■■□□□ 1.13
VTI1A-209ENST00000496445 THEMISQ8N1K5 641 aaPredicted RBP22.12■■□□□ 1.13
VTI1A-209ENST00000496445 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.12■■□□□ 1.135e-7■■■□□ 19.2
VTI1A-209ENST00000496445 PIK3C2BO00750 1634 aa22.12■■□□□ 1.13
VTI1A-209ENST00000496445 KANK1Q14678 1352 aa22.12■■□□□ 1.13
VTI1A-209ENST00000496445 SYNMO15061 1565 aa22.1■■□□□ 1.13
VTI1A-209ENST00000496445 NPHP4O75161 1426 aaPredicted RBP22.09■■□□□ 1.13
VTI1A-209ENST00000496445 ANKRD50Q9ULJ7 1429 aa22.09■■□□□ 1.13
VTI1A-209ENST00000496445 UNC13BO14795 1591 aa22.08■■□□□ 1.13
VTI1A-209ENST00000496445 ANKLE2Q86XL3 938 aa22.08■■□□□ 1.13
VTI1A-209ENST00000496445 KDM5AP29375 1690 aaKnown RBP22.07■■□□□ 1.12
VTI1A-209ENST00000496445 SLIT1O75093 1534 aa22.07■■□□□ 1.12
VTI1A-209ENST00000496445 ARHGAP23Q9P227 1491 aa22.07■■□□□ 1.12
VTI1A-209ENST00000496445 STRCP1A6NGW2 1772 aa22.06■■□□□ 1.12
VTI1A-209ENST00000496445 CPS1P31327 1500 aa22.06■■□□□ 1.12
VTI1A-209ENST00000496445 TET3O43151 1660 aa22.05■■□□□ 1.12
VTI1A-209ENST00000496445 GCC2Q8IWJ2 1684 aa22.04■■□□□ 1.12
VTI1A-209ENST00000496445 NOS1P29475 1434 aa22.03■■□□□ 1.12
VTI1A-209ENST00000496445 SCAF11Q99590 1463 aaKnown RBP22.03■■□□□ 1.12
VTI1A-209ENST00000496445 ROCK1Q13464 1354 aa22.02■■□□□ 1.12
VTI1A-209ENST00000496445 PPARGC1BQ86YN6 1023 aaKnown RBP22.02■■□□□ 1.12
VTI1A-209ENST00000496445 ADGRB3O60242 1522 aa22■■□□□ 1.11
VTI1A-209ENST00000496445 RPRD2Q5VT52 1461 aaKnown RBP21.99■■□□□ 1.11
VTI1A-209ENST00000496445 IQGAP3Q86VI3 1631 aa21.98■■□□□ 1.11
VTI1A-209ENST00000496445 E9PCH4 1651 aa21.98■■□□□ 1.11
VTI1A-209ENST00000496445 MYO5BQ9ULV0 1848 aa21.96■■□□□ 1.11
VTI1A-209ENST00000496445 LTKP29376 864 aa21.96■■□□□ 1.11
VTI1A-209ENST00000496445 TMEM2Q9UHN6 1383 aa21.95■■□□□ 1.1
VTI1A-209ENST00000496445 UBAP1LF5GYI3 381 aa21.94■■□□□ 1.1
VTI1A-209ENST00000496445 IDI1Q13907 227 aa21.94■■□□□ 1.1
VTI1A-209ENST00000496445 ALKQ9UM73 1620 aa21.92■■□□□ 1.1
VTI1A-209ENST00000496445 RRBP1Q9P2E9 1410 aaKnown RBP21.92■■□□□ 1.1
VTI1A-209ENST00000496445 LRRC7Q96NW7 1537 aa21.9■■□□□ 1.1
VTI1A-209ENST00000496445 ITGAEP38570 1179 aa21.9■■□□□ 1.1
VTI1A-209ENST00000496445 TXNDC2Q86VQ3 553 aa21.9■■□□□ 1.1
VTI1A-209ENST00000496445 XIRP1Q702N8 1843 aaKnown RBP21.9■■□□□ 1.1
VTI1A-209ENST00000496445 TMEM131LA2VDJ0 1609 aa21.89■■□□□ 1.09
VTI1A-209ENST00000496445 STAG3Q9UJ98 1225 aa21.87■■□□□ 1.09
VTI1A-209ENST00000496445 SLC52A1Q9NWF4 448 aa21.86■■□□□ 1.09
VTI1A-209ENST00000496445 EID1Q9Y6B2 187 aa21.86■■□□□ 1.09
VTI1A-209ENST00000496445 ZFYVE9O95405 1425 aa21.84■■□□□ 1.09
VTI1A-209ENST00000496445 NUP155O75694 1391 aa21.83■■□□□ 1.08
VTI1A-209ENST00000496445 SPHKAPQ2M3C7 1700 aa21.81■■□□□ 1.08
VTI1A-209ENST00000496445 NWD1Q149M9 1564 aa21.8■■□□□ 1.08
VTI1A-209ENST00000496445 TOM1O60784 492 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms