RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 NCOA1Q15788 1441 aa12.8□□□□□ -0.36
HDAC6-234ENST00000493923 MAP3K1Q13233 1512 aa12.8□□□□□ -0.36
HDAC6-234ENST00000493923 CAMSAP1Q5T5Y3 1602 aa12.8□□□□□ -0.36
HDAC6-234ENST00000493923 MYO3AQ8NEV4 1616 aa12.8□□□□□ -0.36
HDAC6-234ENST00000493923 KIF3BO15066 747 aa12.79□□□□□ -0.36
HDAC6-234ENST00000493923 FBXO31Q5XUX0 539 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-234ENST00000493923 NCKAP5LQ9HCH0 1330 aa12.79□□□□□ -0.36
HDAC6-234ENST00000493923 PTPRTO14522 1441 aa12.78□□□□□ -0.36
HDAC6-234ENST00000493923 MYOM3Q5VTT5 1437 aa12.78□□□□□ -0.36
HDAC6-234ENST00000493923 ZNF142P52746 1687 aaPredicted RBP12.77□□□□□ -0.36
HDAC6-234ENST00000493923 MAST1Q9Y2H9 1570 aa12.76□□□□□ -0.37
HDAC6-234ENST00000493923 CEP170BQ9Y4F5 1589 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-234ENST00000493923 LTBP4Q8N2S1 1624 aa12.76□□□□□ -0.37
HDAC6-234ENST00000493923 MROH1Q8NDA8 1641 aa12.74□□□□□ -0.37
HDAC6-234ENST00000493923 RSPH4AQ5TD94 716 aa12.74□□□□□ -0.37
HDAC6-234ENST00000493923 KDM5DQ9BY66 1539 aa12.73□□□□□ -0.37
HDAC6-234ENST00000493923 DNMT1P26358 1616 aaKnown RBP12.73□□□□□ -0.37
HDAC6-234ENST00000493923 MIA2Q96PC5 1412 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 TSPY4P0CV99 314 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 TSPY10P0CW01 314 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 RNF17Q9BXT8 1623 aaKnown RBP12.72□□□□□ -0.37
HDAC6-234ENST00000493923 PTPN23Q9H3S7 1636 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 CFAP65Q6ZU64 1925 aaKnown RBP12.72□□□□□ -0.37
HDAC6-234ENST00000493923 A2ML1A8K2U0 1454 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 PZPP20742 1482 aa12.72□□□□□ -0.37
HDAC6-234ENST00000493923 TCOF1Q13428 1488 aaKnown RBP12.72□□□□□ -0.37
HDAC6-234ENST00000493923 ABCC5O15440 1437 aa12.71□□□□□ -0.37
HDAC6-234ENST00000493923 TNRQ92752 1358 aa12.71□□□□□ -0.37
HDAC6-234ENST00000493923 CNKSR2Q8WXI2 1034 aa12.71□□□□□ -0.37
HDAC6-234ENST00000493923 ABCC3O15438 1527 aa12.71□□□□□ -0.38
HDAC6-234ENST00000493923 ZNF335Q9H4Z2 1342 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-234ENST00000493923 WASHC2CQ9Y4E1 1318 aa12.7□□□□□ -0.38
HDAC6-234ENST00000493923 CEP152O94986 1710 aa12.7□□□□□ -0.38
HDAC6-234ENST00000493923 CROCC2H7BZ55 1655 aa12.7□□□□□ -0.38
HDAC6-234ENST00000493923 PLA2R1Q13018 1463 aa12.69□□□□□ -0.38
HDAC6-234ENST00000493923 NEURL4Q96JN8 1562 aa12.69□□□□□ -0.38
HDAC6-234ENST00000493923 FGD6Q6ZV73 1430 aa12.68□□□□□ -0.38
HDAC6-234ENST00000493923 FAM135AQ9P2D6 1515 aa12.67□□□□□ -0.38
HDAC6-234ENST00000493923 EIF2AK4Q9P2K8 1649 aaKnown RBP12.67□□□□□ -0.38
HDAC6-234ENST00000493923 HOXD11P31277 338 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-234ENST00000493923 RRP7BPQ9NSQ0 103 aa12.67□□□□□ -0.38
HDAC6-234ENST00000493923 DAPK1P53355 1430 aa12.66□□□□□ -0.38
HDAC6-234ENST00000493923 CHIC2Q9UKJ5 165 aa12.66□□□□□ -0.38
HDAC6-234ENST00000493923 DUOX2Q9NRD8 1548 aa12.66□□□□□ -0.38
HDAC6-234ENST00000493923 KIF15Q9NS87 1388 aa12.66□□□□□ -0.38
HDAC6-234ENST00000493923 PKD2Q13563 968 aa12.65□□□□□ -0.38
HDAC6-234ENST00000493923 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.65□□□□□ -0.38
HDAC6-234ENST00000493923 POLR1AO95602 1720 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-234ENST00000493923 SHANK2Q9UPX8 1470 aa12.65□□□□□ -0.38
HDAC6-234ENST00000493923 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
HDAC6-234ENST00000493923 ERVK-7P63135 1459 aa12.64□□□□□ -0.39
HDAC6-234ENST00000493923 APLP2Q06481 763 aa12.63□□□□□ -0.39
HDAC6-234ENST00000493923 ZC3H13Q5T200 1668 aaKnown RBP12.63□□□□□ -0.39
HDAC6-234ENST00000493923 PRDM15P57071 1507 aaPredicted RBP12.62□□□□□ -0.39
HDAC6-234ENST00000493923 UGGT1Q9NYU2 1555 aa12.61□□□□□ -0.39
HDAC6-234ENST00000493923 NLRP1Q9C000 1473 aa12.61□□□□□ -0.39
HDAC6-234ENST00000493923 DEPDC5O75140 1603 aa12.6□□□□□ -0.39
HDAC6-234ENST00000493923 DCAF8L1A6NGE4 600 aa12.6□□□□□ -0.39
HDAC6-234ENST00000493923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.6□□□□□ -0.394e-8■■■□□ 18.2
HDAC6-234ENST00000493923 ERBINQ96RT1 1412 aa12.6□□□□□ -0.39
HDAC6-234ENST00000493923 RNF216Q9NWF9 866 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-234ENST00000493923 VWDEQ8N2E2 1590 aa12.59□□□□□ -0.39
HDAC6-234ENST00000493923 UBR1Q8IWV7 1749 aa12.59□□□□□ -0.39
HDAC6-234ENST00000493923 IQSEC2Q5JU85 1478 aa12.59□□□□□ -0.39
HDAC6-234ENST00000493923 STRCP1A6NGW2 1772 aa12.58□□□□□ -0.39
HDAC6-234ENST00000493923 PPARGC1BQ86YN6 1023 aaKnown RBP12.58□□□□□ -0.4
HDAC6-234ENST00000493923 FAM50AQ14320 339 aaKnown RBP12.57□□□□□ -0.4
HDAC6-234ENST00000493923 ANKLE2Q86XL3 938 aa12.57□□□□□ -0.4
HDAC6-234ENST00000493923 THEMISQ8N1K5 641 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-234ENST00000493923 NPHP4O75161 1426 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-234ENST00000493923 ARHGAP31Q2M1Z3 1444 aa12.56□□□□□ -0.4
HDAC6-234ENST00000493923 MED14O60244 1454 aa12.56□□□□□ -0.4
HDAC6-234ENST00000493923 ADGRL2O95490 1459 aa12.56□□□□□ -0.4
HDAC6-234ENST00000493923 ANKRD30AQ9BXX3 1397 aa12.56□□□□□ -0.4
HDAC6-234ENST00000493923 UBAP1LF5GYI3 381 aa12.55□□□□□ -0.4
HDAC6-234ENST00000493923 LTKP29376 864 aa12.55□□□□□ -0.4
HDAC6-234ENST00000493923 SYNMO15061 1565 aa12.55□□□□□ -0.4
HDAC6-234ENST00000493923 PIK3C2BO00750 1634 aa12.55□□□□□ -0.4
HDAC6-234ENST00000493923 ALKQ9UM73 1620 aa12.55□□□□□ -0.4
HDAC6-234ENST00000493923 IQGAP1P46940 1657 aa12.54□□□□□ -0.4
HDAC6-234ENST00000493923 LMTK2Q8IWU2 1503 aa12.53□□□□□ -0.4
HDAC6-234ENST00000493923 ARHGAP23Q9P227 1491 aa12.53□□□□□ -0.4
HDAC6-234ENST00000493923 ILDR2Q71H61 639 aa12.51□□□□□ -0.41
HDAC6-234ENST00000493923 SLIT1O75093 1534 aa12.51□□□□□ -0.41
HDAC6-234ENST00000493923 EFCAB6Q5THR3 1501 aa12.51□□□□□ -0.41
HDAC6-234ENST00000493923 IDI1Q13907 227 aa12.5□□□□□ -0.41
HDAC6-234ENST00000493923 NOS1P29475 1434 aa12.5□□□□□ -0.41
HDAC6-234ENST00000493923 ANKRD50Q9ULJ7 1429 aa12.5□□□□□ -0.41
HDAC6-234ENST00000493923 SCAF11Q99590 1463 aaKnown RBP12.5□□□□□ -0.41
HDAC6-234ENST00000493923 CPS1P31327 1500 aa12.5□□□□□ -0.41
HDAC6-234ENST00000493923 KANK1Q14678 1352 aa12.49□□□□□ -0.41
HDAC6-234ENST00000493923 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
HDAC6-234ENST00000493923 LRRC7Q96NW7 1537 aa12.48□□□□□ -0.41
HDAC6-234ENST00000493923 DISP3Q9P2K9 1392 aa12.48□□□□□ -0.41
HDAC6-234ENST00000493923 TXNDC2Q86VQ3 553 aa12.48□□□□□ -0.41
HDAC6-234ENST00000493923 MYO5BQ9ULV0 1848 aa12.48□□□□□ -0.41
HDAC6-234ENST00000493923 XIRP1Q702N8 1843 aaKnown RBP12.47□□□□□ -0.41
HDAC6-234ENST00000493923 PIP4K2BP78356 416 aa12.47□□□□□ -0.41
HDAC6-234ENST00000493923 TMEM2Q9UHN6 1383 aa12.46□□□□□ -0.41
HDAC6-234ENST00000493923 HSPA1LP34931 641 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms