RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 NISCHQ9Y2I1 1504 aa20.24■□□□□ 0.83
HDAC6-234ENST00000493923 AEBP2Q6ZN18 517 aaPredicted RBP19.34■□□□□ 0.69
HDAC6-234ENST00000493923 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
HDAC6-234ENST00000493923 ABCC9O60706 1549 aa18.08■□□□□ 0.49
HDAC6-234ENST00000493923 CCDC180Q9P1Z9 1646 aa18.07■□□□□ 0.48
HDAC6-234ENST00000493923 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
HDAC6-234ENST00000493923 NACADO15069 1562 aa17.05■□□□□ 0.32
HDAC6-234ENST00000493923 DCAF8L2P0C7V8 631 aa17.04■□□□□ 0.32
HDAC6-234ENST00000493923 DNAJC5BQ9UF47 199 aa16.98■□□□□ 0.31
HDAC6-234ENST00000493923 UNC13AQ9UPW8 1703 aa16.89■□□□□ 0.29
HDAC6-234ENST00000493923 PABPN1Q86U42 306 aaKnown RBP eCLIP16.87■□□□□ 0.29
HDAC6-234ENST00000493923 MYO15BQ96JP2 1530 aa16.82■□□□□ 0.28
HDAC6-234ENST00000493923 ZCCHC6Q5VYS8 1495 aaKnown RBP16.8■□□□□ 0.28
HDAC6-234ENST00000493923 BICRAQ9NZM4 1560 aa16.77■□□□□ 0.28
HDAC6-234ENST00000493923 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
HDAC6-234ENST00000493923 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
HDAC6-234ENST00000493923 SCRIBQ14160 1630 aa16.56■□□□□ 0.24
HDAC6-234ENST00000493923 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
HDAC6-234ENST00000493923 PHF23Q9BUL5 403 aaPredicted RBP16.36■□□□□ 0.21
HDAC6-234ENST00000493923 CC2D2AQ9P2K1 1620 aa16.32■□□□□ 0.2
HDAC6-234ENST00000493923 EIF4G1Q04637 1599 aaKnown RBP16.29■□□□□ 0.2
HDAC6-234ENST00000493923 CECR2Q9BXF3 1484 aa16.23■□□□□ 0.19
HDAC6-234ENST00000493923 SMARCA4P51532 1647 aa15.78■□□□□ 0.12
HDAC6-234ENST00000493923 NCAPD3P42695 1498 aa15.77■□□□□ 0.11
HDAC6-234ENST00000493923 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.11
HDAC6-234ENST00000493923 SMARCA2P51531 1590 aa15.66■□□□□ 0.1
HDAC6-234ENST00000493923 MROH2BQ7Z745 1585 aa15.66■□□□□ 0.1
HDAC6-234ENST00000493923 HMGXB3Q12766 1538 aa15.65■□□□□ 0.1
HDAC6-234ENST00000493923 BAZ1AQ9NRL2 1556 aaPredicted RBP15.65■□□□□ 0.1
HDAC6-234ENST00000493923 NESP48681 1621 aa15.6■□□□□ 0.09
HDAC6-234ENST00000493923 PEG3Q9GZU2 1588 aa15.59■□□□□ 0.09
HDAC6-234ENST00000493923 BAZ1BQ9UIG0 1483 aaKnown RBP15.59■□□□□ 0.09
HDAC6-234ENST00000493923 ERCC6Q03468 1493 aa15.52■□□□□ 0.07
HDAC6-234ENST00000493923 WIZO95785 1651 aa15.47■□□□□ 0.07
HDAC6-234ENST00000493923 CUX2O14529 1486 aa15.45■□□□□ 0.06
HDAC6-234ENST00000493923 FOXD1Q16676 465 aa15.42■□□□□ 0.06
HDAC6-234ENST00000493923 DNAJC5Q9H3Z4 198 aa15.4■□□□□ 0.06
HDAC6-234ENST00000493923 THOC2Q8NI27 1593 aaKnown RBP15.38■□□□□ 0.05
HDAC6-234ENST00000493923 LAMC3Q9Y6N6 1575 aa15.37■□□□□ 0.05
HDAC6-234ENST00000493923 KIF21AQ7Z4S6 1674 aa15.37■□□□□ 0.05
HDAC6-234ENST00000493923 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
HDAC6-234ENST00000493923 CADPSQ9ULU8 1353 aa15.3■□□□□ 0.04
HDAC6-234ENST00000493923 PDS5BQ9NTI5 1447 aa15.26■□□□□ 0.03
HDAC6-234ENST00000493923 TOP2AP11388 1531 aaKnown RBP15.22■□□□□ 0.03
HDAC6-234ENST00000493923 MRC2Q9UBG0 1479 aa15.18■□□□□ 0.02
HDAC6-234ENST00000493923 CFTRP13569 1480 aa15.15■□□□□ 0.02
HDAC6-234ENST00000493923 WDR62O43379 1518 aa15.14■□□□□ 0.01
HDAC6-234ENST00000493923 FANCD2Q9BXW9 1451 aa15.14■□□□□ 0.01
HDAC6-234ENST00000493923 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
HDAC6-234ENST00000493923 CCDC88BA6NC98 1476 aa15.08■□□□□ 0.01
HDAC6-234ENST00000493923 URB2Q14146 1524 aaKnown RBP15.07■□□□□ 0
HDAC6-234ENST00000493923 PRDM2Q13029 1718 aa15□□□□□ -0.01
HDAC6-234ENST00000493923 TOPBP1Q92547 1522 aa14.88□□□□□ -0.03
HDAC6-234ENST00000493923 ZNF608Q9ULD9 1512 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-234ENST00000493923 IFT140Q96RY7 1462 aa14.81□□□□□ -0.04
HDAC6-234ENST00000493923 DNMBPQ6XZF7 1577 aa14.81□□□□□ -0.04
HDAC6-234ENST00000493923 TRIM41Q8WV44 630 aa14.78□□□□□ -0.04
HDAC6-234ENST00000493923 PLPPR3Q6T4P5 718 aa14.77□□□□□ -0.05
HDAC6-234ENST00000493923 OSCARQ8IYS5 282 aa14.76□□□□□ -0.05
HDAC6-234ENST00000493923 TARBP1Q13395 1621 aaKnown RBP14.76□□□□□ -0.05
HDAC6-234ENST00000493923 EIF4G3O43432 1585 aaKnown RBP14.75□□□□□ -0.05
HDAC6-234ENST00000493923 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-234ENST00000493923 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
HDAC6-234ENST00000493923 SUPT5HO00267 1087 aaKnown RBP14.73□□□□□ -0.05
HDAC6-234ENST00000493923 AQRO60306 1485 aaKnown RBP eCLIP14.73□□□□□ -0.05
HDAC6-234ENST00000493923 RAD54L2Q9Y4B4 1467 aa14.73□□□□□ -0.05
HDAC6-234ENST00000493923 CUX1P39880 1505 aa14.69□□□□□ -0.06
HDAC6-234ENST00000493923 FGD5Q6ZNL6 1462 aa14.66□□□□□ -0.06
HDAC6-234ENST00000493923 TDRD9Q8NDG6 1382 aaKnown RBP14.65□□□□□ -0.06
HDAC6-234ENST00000493923 CHD1O14646 1710 aa14.65□□□□□ -0.06
HDAC6-234ENST00000493923 RIMBP3CA6NJZ7 1639 aa14.64□□□□□ -0.07
HDAC6-234ENST00000493923 RIMBP3BA6NNM3 1639 aa14.64□□□□□ -0.07
HDAC6-234ENST00000493923 RIMBP3Q9UFD9 1639 aa14.64□□□□□ -0.07
HDAC6-234ENST00000493923 SOGA1O94964 1423 aa14.64□□□□□ -0.07
HDAC6-234ENST00000493923 ARHGEF11O15085 1522 aa14.58□□□□□ -0.08
HDAC6-234ENST00000493923 WDR97A6NE52 1622 aa14.56□□□□□ -0.08
HDAC6-234ENST00000493923 FBLN2P98095 1184 aa14.56□□□□□ -0.08
HDAC6-234ENST00000493923 SNAPC4Q5SXM2 1469 aa14.56□□□□□ -0.08
HDAC6-234ENST00000493923 MSH5O43196 834 aa14.52□□□□□ -0.09
HDAC6-234ENST00000493923 GRIN2BQ13224 1484 aa14.49□□□□□ -0.09
HDAC6-234ENST00000493923 ARAP1Q96P48 1450 aa14.48□□□□□ -0.09
HDAC6-234ENST00000493923 PBRM1Q86U86 1689 aa14.48□□□□□ -0.09
HDAC6-234ENST00000493923 ABCA10Q8WWZ4 1543 aa14.47□□□□□ -0.09
HDAC6-234ENST00000493923 ABCA5Q8WWZ7 1642 aa14.47□□□□□ -0.09
HDAC6-234ENST00000493923 SYNJ1O43426 1573 aa14.47□□□□□ -0.09
HDAC6-234ENST00000493923 CLASP1Q7Z460 1538 aa14.46□□□□□ -0.09
HDAC6-234ENST00000493923 GAPVD1Q14C86 1478 aa14.46□□□□□ -0.09
HDAC6-234ENST00000493923 MAGI1Q96QZ7 1491 aaPredicted RBP14.46□□□□□ -0.09
HDAC6-234ENST00000493923 CYB5RLQ6IPT4 315 aa14.46□□□□□ -0.09
HDAC6-234ENST00000493923 PIAS4Q8N2W9 510 aaPredicted RBP14.44□□□□□ -0.1
HDAC6-234ENST00000493923 CHMP7Q8WUX9 453 aaPredicted RBP14.44□□□□□ -0.1
HDAC6-234ENST00000493923 BIVM-ERCC5R4GMW8 1640 aa14.44□□□□□ -0.1
HDAC6-234ENST00000493923 SYNJ2O15056 1496 aa14.43□□□□□ -0.1
HDAC6-234ENST00000493923 TOP2BQ02880 1626 aa14.42□□□□□ -0.1
HDAC6-234ENST00000493923 WRNQ14191 1432 aaPredicted RBP eCLIP14.41□□□□□ -0.1
HDAC6-234ENST00000493923 PPP6R1Q9UPN7 881 aa14.38□□□□□ -0.11
HDAC6-234ENST00000493923 ADRA2BP18089 450 aa14.35□□□□□ -0.11
HDAC6-234ENST00000493923 ADAMTS12P58397 1594 aa14.34□□□□□ -0.11
HDAC6-234ENST00000493923 ERCC6L2Q5T890 1561 aa14.33□□□□□ -0.12
HDAC6-234ENST00000493923 GRIN2AQ12879 1464 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 554.7 ms