RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 PPP6R1Q9UPN7 881 aa21.85■■□□□ 1.09
VTI1A-206ENST00000489142 TCOF1Q13428 1488 aaKnown RBP21.84■■□□□ 1.09
VTI1A-206ENST00000489142 DAPK1P53355 1430 aa21.84■■□□□ 1.09
VTI1A-206ENST00000489142 ZNF142P52746 1687 aaPredicted RBP21.84■■□□□ 1.09
VTI1A-206ENST00000489142 EIF2AK4Q9P2K8 1649 aaKnown RBP21.84■■□□□ 1.09
VTI1A-206ENST00000489142 SHANK2Q9UPX8 1470 aa21.83■■□□□ 1.08
VTI1A-206ENST00000489142 CAMSAP1Q5T5Y3 1602 aa21.82■■□□□ 1.08
VTI1A-206ENST00000489142 CEP170BQ9Y4F5 1589 aaPredicted RBP21.82■■□□□ 1.08
VTI1A-206ENST00000489142 WASHC2CQ9Y4E1 1318 aa21.81■■□□□ 1.08
VTI1A-206ENST00000489142 MROH1Q8NDA8 1641 aa21.81■■□□□ 1.08
VTI1A-206ENST00000489142 DUOX2Q9NRD8 1548 aa21.8■■□□□ 1.08
VTI1A-206ENST00000489142 CEP152O94986 1710 aa21.8■■□□□ 1.08
VTI1A-206ENST00000489142 FBXO31Q5XUX0 539 aaPredicted RBP21.8■■□□□ 1.08
VTI1A-206ENST00000489142 KIF15Q9NS87 1388 aa21.79■■□□□ 1.08
VTI1A-206ENST00000489142 RRP7BPQ9NSQ0 103 aa21.79■■□□□ 1.08
VTI1A-206ENST00000489142 FAM135AQ9P2D6 1515 aa21.79■■□□□ 1.08
VTI1A-206ENST00000489142 NCOA1Q15788 1441 aa21.79■■□□□ 1.08
VTI1A-206ENST00000489142 PZPP20742 1482 aa21.78■■□□□ 1.08
VTI1A-206ENST00000489142 CHIC2Q9UKJ5 165 aa21.78■■□□□ 1.08
VTI1A-206ENST00000489142 ABCC3O15438 1527 aa21.78■■□□□ 1.08
VTI1A-206ENST00000489142 ZC3H13Q5T200 1668 aaKnown RBP21.77■■□□□ 1.08
VTI1A-206ENST00000489142 PPARGC1BQ86YN6 1023 aaKnown RBP21.77■■□□□ 1.08
VTI1A-206ENST00000489142 FAM50AQ14320 339 aaKnown RBP21.76■■□□□ 1.07
VTI1A-206ENST00000489142 CFAP65Q6ZU64 1925 aaKnown RBP21.74■■□□□ 1.07
VTI1A-206ENST00000489142 TNRQ92752 1358 aa21.74■■□□□ 1.07
VTI1A-206ENST00000489142 A2ML1A8K2U0 1454 aa21.72■■□□□ 1.07
VTI1A-206ENST00000489142 DMRT2Q9Y5R5 561 aa21.72■■□□□ 1.07
VTI1A-206ENST00000489142 NCKAP5LQ9HCH0 1330 aa21.72■■□□□ 1.07
VTI1A-206ENST00000489142 ERBINQ96RT1 1412 aa21.72■■□□□ 1.07
VTI1A-206ENST00000489142 FBXO41Q8TF61 875 aa21.71■■□□□ 1.07
VTI1A-206ENST00000489142 PTPRTO14522 1441 aa21.71■■□□□ 1.07
VTI1A-206ENST00000489142 PRDM15P57071 1507 aaPredicted RBP21.7■■□□□ 1.06
VTI1A-206ENST00000489142 ANKRD30AQ9BXX3 1397 aa21.69■■□□□ 1.06
VTI1A-206ENST00000489142 DEPDC5O75140 1603 aa21.69■■□□□ 1.06
VTI1A-206ENST00000489142 CERKQ8TCT0 537 aa21.68■■□□□ 1.06
VTI1A-206ENST00000489142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.68■■□□□ 1.062e-8■■■□□ 18.7
VTI1A-206ENST00000489142 PLA2R1Q13018 1463 aa21.66■■□□□ 1.06
VTI1A-206ENST00000489142 SPATA31D1Q6ZQQ2 1576 aa21.65■■□□□ 1.06
VTI1A-206ENST00000489142 POLR1AO95602 1720 aaPredicted RBP21.65■■□□□ 1.06
VTI1A-206ENST00000489142 ADGRL2O95490 1459 aa21.64■■□□□ 1.06
VTI1A-206ENST00000489142 ERVK-7P63135 1459 aa21.64■■□□□ 1.06
VTI1A-206ENST00000489142 UGGT1Q9NYU2 1555 aa21.61■■□□□ 1.05
VTI1A-206ENST00000489142 NLRP1Q9C000 1473 aa21.61■■□□□ 1.05
VTI1A-206ENST00000489142 LTBP4Q8N2S1 1624 aa21.6■■□□□ 1.05
VTI1A-206ENST00000489142 PKD2Q13563 968 aa21.6■■□□□ 1.05
VTI1A-206ENST00000489142 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.6■■□□□ 1.05
VTI1A-206ENST00000489142 NEURL4Q96JN8 1562 aa21.59■■□□□ 1.05
VTI1A-206ENST00000489142 KANK1Q14678 1352 aa21.58■■□□□ 1.04
VTI1A-206ENST00000489142 VWDEQ8N2E2 1590 aa21.57■■□□□ 1.04
VTI1A-206ENST00000489142 ITGAEP38570 1179 aa21.57■■□□□ 1.04
VTI1A-206ENST00000489142 ZNF335Q9H4Z2 1342 aaPredicted RBP21.56■■□□□ 1.04
VTI1A-206ENST00000489142 ANKRD50Q9ULJ7 1429 aa21.55■■□□□ 1.04
VTI1A-206ENST00000489142 UBR1Q8IWV7 1749 aa21.55■■□□□ 1.04
VTI1A-206ENST00000489142 ARHGAP31Q2M1Z3 1444 aa21.55■■□□□ 1.04
VTI1A-206ENST00000489142 THEMISQ8N1K5 641 aaPredicted RBP21.53■■□□□ 1.04
VTI1A-206ENST00000489142 LMTK2Q8IWU2 1503 aa21.53■■□□□ 1.04
VTI1A-206ENST00000489142 EFCAB6Q5THR3 1501 aa21.51■■□□□ 1.03
VTI1A-206ENST00000489142 PIK3C2BO00750 1634 aa21.51■■□□□ 1.03
VTI1A-206ENST00000489142 ANKLE2Q86XL3 938 aa21.5■■□□□ 1.03
VTI1A-206ENST00000489142 UNC13BO14795 1591 aa21.48■■□□□ 1.03
VTI1A-206ENST00000489142 SYNMO15061 1565 aa21.48■■□□□ 1.03
VTI1A-206ENST00000489142 IQGAP1P46940 1657 aa21.48■■□□□ 1.03
VTI1A-206ENST00000489142 ROCK1Q13464 1354 aa21.47■■□□□ 1.03
VTI1A-206ENST00000489142 NPHP4O75161 1426 aaPredicted RBP21.46■■□□□ 1.03
VTI1A-206ENST00000489142 TET3O43151 1660 aa21.45■■□□□ 1.02
VTI1A-206ENST00000489142 GCC2Q8IWJ2 1684 aa21.44■■□□□ 1.02
VTI1A-206ENST00000489142 MED14O60244 1454 aa21.43■■□□□ 1.02
VTI1A-206ENST00000489142 NOS1P29475 1434 aa21.41■■□□□ 1.02
VTI1A-206ENST00000489142 RRBP1Q9P2E9 1410 aaKnown RBP21.41■■□□□ 1.02
VTI1A-206ENST00000489142 IQSEC2Q5JU85 1478 aa21.4■■□□□ 1.02
VTI1A-206ENST00000489142 SCAF11Q99590 1463 aaKnown RBP21.4■■□□□ 1.02
VTI1A-206ENST00000489142 E9PCH4 1651 aa21.4■■□□□ 1.02
VTI1A-206ENST00000489142 SLIT1O75093 1534 aa21.39■■□□□ 1.02
VTI1A-206ENST00000489142 ARHGAP23Q9P227 1491 aa21.39■■□□□ 1.02
VTI1A-206ENST00000489142 MYO5BQ9ULV0 1848 aa21.39■■□□□ 1.02
VTI1A-206ENST00000489142 IDI1Q13907 227 aa21.39■■□□□ 1.01
VTI1A-206ENST00000489142 STAG3Q9UJ98 1225 aa21.39■■□□□ 1.01
VTI1A-206ENST00000489142 IQGAP3Q86VI3 1631 aa21.39■■□□□ 1.01
VTI1A-206ENST00000489142 STRCP1A6NGW2 1772 aa21.38■■□□□ 1.01
VTI1A-206ENST00000489142 LTKP29376 864 aa21.38■■□□□ 1.01
VTI1A-206ENST00000489142 TXNDC2Q86VQ3 553 aa21.37■■□□□ 1.01
VTI1A-206ENST00000489142 ADGRB3O60242 1522 aa21.37■■□□□ 1.01
VTI1A-206ENST00000489142 RPRD2Q5VT52 1461 aaKnown RBP21.37■■□□□ 1.01
VTI1A-206ENST00000489142 KDM5AP29375 1690 aaKnown RBP21.37■■□□□ 1.01
VTI1A-206ENST00000489142 TMEM2Q9UHN6 1383 aa21.35■■□□□ 1.01
VTI1A-206ENST00000489142 CPS1P31327 1500 aa21.34■■□□□ 1.01
VTI1A-206ENST00000489142 NUP155O75694 1391 aa21.34■■□□□ 1.01
VTI1A-206ENST00000489142 UBAP1LF5GYI3 381 aa21.32■■□□□ 1
VTI1A-206ENST00000489142 EID1Q9Y6B2 187 aa21.31■■□□□ 1
VTI1A-206ENST00000489142 SENP3Q9H4L4 574 aaPredicted RBP21.3■■□□□ 1
VTI1A-206ENST00000489142 TMEM131LA2VDJ0 1609 aa21.29■■□□□ 1
VTI1A-206ENST00000489142 SLC52A1Q9NWF4 448 aa21.28■■□□□ 1
VTI1A-206ENST00000489142 NAIPQ13075 1403 aa21.27■■□□□ 1
VTI1A-206ENST00000489142 CHGAP10645 457 aaKnown RBP21.25■□□□□ 0.99
VTI1A-206ENST00000489142 SPHKAPQ2M3C7 1700 aa21.24■□□□□ 0.99
VTI1A-206ENST00000489142 LRRC7Q96NW7 1537 aa21.24■□□□□ 0.99
VTI1A-206ENST00000489142 SCAF1Q9H7N4 1312 aaKnown RBP21.23■□□□□ 0.99
VTI1A-206ENST00000489142 ZFYVE9O95405 1425 aa21.21■□□□□ 0.99
VTI1A-206ENST00000489142 XIRP1Q702N8 1843 aaKnown RBP21.21■□□□□ 0.99
VTI1A-206ENST00000489142 PIP4K2BP78356 416 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms