RNA–Protein interactions for RNA: ENST00000485985.1

LMBR1-217, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-217ENST00000485985 TCOF1Q13428 1488 aaKnown RBP33.04■■■□□ 2.88
LMBR1-217ENST00000485985 ZNF335Q9H4Z2 1342 aaPredicted RBP33.03■■■□□ 2.88
LMBR1-217ENST00000485985 MYOM3Q5VTT5 1437 aa33.01■■■□□ 2.87
LMBR1-217ENST00000485985 MAST1Q9Y2H9 1570 aa33■■■□□ 2.87
LMBR1-217ENST00000485985 RSPH4AQ5TD94 716 aa33■■■□□ 2.87
LMBR1-217ENST00000485985 KIF3BO15066 747 aa32.99■■■□□ 2.87
LMBR1-217ENST00000485985 A2ML1A8K2U0 1454 aa32.98■■■□□ 2.87
LMBR1-217ENST00000485985 DNMT1P26358 1616 aaKnown RBP32.95■■■□□ 2.87
LMBR1-217ENST00000485985 MIA2Q96PC5 1412 aa32.95■■■□□ 2.87
LMBR1-217ENST00000485985 ILDR2Q71H61 639 aa32.94■■■□□ 2.86
LMBR1-217ENST00000485985 FBXO31Q5XUX0 539 aaPredicted RBP32.93■■■□□ 2.86
LMBR1-217ENST00000485985 CROCC2H7BZ55 1655 aa32.93■■■□□ 2.86
LMBR1-217ENST00000485985 KDM5DQ9BY66 1539 aa32.91■■■□□ 2.86
LMBR1-217ENST00000485985 TNRQ92752 1358 aa32.9■■■□□ 2.86
LMBR1-217ENST00000485985 FAM135AQ9P2D6 1515 aa32.9■■■□□ 2.86
LMBR1-217ENST00000485985 RNF17Q9BXT8 1623 aaKnown RBP32.89■■■□□ 2.86
LMBR1-217ENST00000485985 PZPP20742 1482 aa32.89■■■□□ 2.86
LMBR1-217ENST00000485985 WASHC2CQ9Y4E1 1318 aa32.89■■■□□ 2.86
LMBR1-217ENST00000485985 UBAP1LF5GYI3 381 aa32.88■■■□□ 2.85
LMBR1-217ENST00000485985 PTPN23Q9H3S7 1636 aa32.88■■■□□ 2.85
LMBR1-217ENST00000485985 SPATA31D1Q6ZQQ2 1576 aa32.87■■■□□ 2.85
LMBR1-217ENST00000485985 TSPY4P0CV99 314 aa32.86■■■□□ 2.85
LMBR1-217ENST00000485985 TSPY10P0CW01 314 aa32.86■■■□□ 2.85
LMBR1-217ENST00000485985 EIF2AK4Q9P2K8 1649 aaKnown RBP32.85■■■□□ 2.85
LMBR1-217ENST00000485985 POLR1AO95602 1720 aaPredicted RBP32.82■■■□□ 2.84
LMBR1-217ENST00000485985 MROH1Q8NDA8 1641 aa32.8■■■□□ 2.84
LMBR1-217ENST00000485985 NEURL4Q96JN8 1562 aa32.79■■■□□ 2.84
LMBR1-217ENST00000485985 ZC3H13Q5T200 1668 aaKnown RBP32.79■■■□□ 2.84
LMBR1-217ENST00000485985 SOCS7O14512 581 aa32.78■■■□□ 2.84
LMBR1-217ENST00000485985 APLP2Q06481 763 aa32.77■■■□□ 2.84
LMBR1-217ENST00000485985 SHANK2Q9UPX8 1470 aa32.76■■■□□ 2.84
LMBR1-217ENST00000485985 NLRP1Q9C000 1473 aa32.75■■■□□ 2.83
LMBR1-217ENST00000485985 CEP152O94986 1710 aa32.75■■■□□ 2.83
LMBR1-217ENST00000485985 THEMISQ8N1K5 641 aaPredicted RBP32.75■■■□□ 2.83
LMBR1-217ENST00000485985 FGD6Q6ZV73 1430 aa32.75■■■□□ 2.83
LMBR1-217ENST00000485985 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.74■■■□□ 2.834e-7■■■■□ 21.6
LMBR1-217ENST00000485985 ANKLE2Q86XL3 938 aa32.74■■■□□ 2.83
LMBR1-217ENST00000485985 ABCC3O15438 1527 aa32.72■■■□□ 2.83
LMBR1-217ENST00000485985 DUOX2Q9NRD8 1548 aa32.72■■■□□ 2.83
LMBR1-217ENST00000485985 ABCC5O15440 1437 aa32.72■■■□□ 2.83
LMBR1-217ENST00000485985 UGGT1Q9NYU2 1555 aa32.7■■■□□ 2.83
LMBR1-217ENST00000485985 CPS1P31327 1500 aa32.7■■■□□ 2.83
LMBR1-217ENST00000485985 DAPK1P53355 1430 aa32.68■■■□□ 2.82
LMBR1-217ENST00000485985 MED14O60244 1454 aa32.64■■■□□ 2.82
LMBR1-217ENST00000485985 DEPDC5O75140 1603 aa32.63■■■□□ 2.81
LMBR1-217ENST00000485985 PRDM15P57071 1507 aaPredicted RBP32.63■■■□□ 2.81
LMBR1-217ENST00000485985 KIF15Q9NS87 1388 aa32.63■■■□□ 2.81
LMBR1-217ENST00000485985 VWDEQ8N2E2 1590 aa32.62■■■□□ 2.81
LMBR1-217ENST00000485985 NPHP4O75161 1426 aaPredicted RBP32.62■■■□□ 2.81
LMBR1-217ENST00000485985 CFAP65Q6ZU64 1925 aaKnown RBP32.62■■■□□ 2.81
LMBR1-217ENST00000485985 TOM1O60784 492 aa32.61■■■□□ 2.81
LMBR1-217ENST00000485985 ERBINQ96RT1 1412 aa32.6■■■□□ 2.81
LMBR1-217ENST00000485985 SCAF1Q9H7N4 1312 aaKnown RBP32.58■■■□□ 2.81
LMBR1-217ENST00000485985 PIP4K2BP78356 416 aa32.58■■■□□ 2.81
LMBR1-217ENST00000485985 ERVK-7P63135 1459 aa32.57■■■□□ 2.8
LMBR1-217ENST00000485985 HSPA1LP34931 641 aa32.55■■■□□ 2.8
LMBR1-217ENST00000485985 IQGAP1P46940 1657 aa32.55■■■□□ 2.8
LMBR1-217ENST00000485985 RRP7BPQ9NSQ0 103 aa32.53■■■□□ 2.8
LMBR1-217ENST00000485985 ADGRL2O95490 1459 aa32.47■■■□□ 2.79
LMBR1-217ENST00000485985 UBR1Q8IWV7 1749 aa32.46■■■□□ 2.79
LMBR1-217ENST00000485985 ANKRD30AQ9BXX3 1397 aa32.45■■■□□ 2.79
LMBR1-217ENST00000485985 CHIC2Q9UKJ5 165 aa32.45■■■□□ 2.79
LMBR1-217ENST00000485985 STRCP1A6NGW2 1772 aa32.45■■■□□ 2.78
LMBR1-217ENST00000485985 ALKQ9UM73 1620 aa32.44■■■□□ 2.78
LMBR1-217ENST00000485985 ARHGAP31Q2M1Z3 1444 aa32.42■■■□□ 2.78
LMBR1-217ENST00000485985 LRRC7Q96NW7 1537 aa32.41■■■□□ 2.78
LMBR1-217ENST00000485985 MED1Q15648 1581 aaPredicted RBP32.39■■■□□ 2.78
LMBR1-217ENST00000485985 SCAF11Q99590 1463 aaKnown RBP32.38■■■□□ 2.77
LMBR1-217ENST00000485985 FAM50AQ14320 339 aaKnown RBP32.38■■■□□ 2.77
LMBR1-217ENST00000485985 LMTK2Q8IWU2 1503 aa32.37■■■□□ 2.77
LMBR1-217ENST00000485985 LTKP29376 864 aa32.37■■■□□ 2.77
LMBR1-217ENST00000485985 ARHGAP23Q9P227 1491 aa32.36■■■□□ 2.77
LMBR1-217ENST00000485985 SYNMO15061 1565 aa32.36■■■□□ 2.77
LMBR1-217ENST00000485985 SLIT1O75093 1534 aa32.36■■■□□ 2.77
LMBR1-217ENST00000485985 TXNDC2Q86VQ3 553 aa32.35■■■□□ 2.77
LMBR1-217ENST00000485985 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.35■■■□□ 2.771e-8■■■□□ 15.2
LMBR1-217ENST00000485985 PIK3C2BO00750 1634 aa32.33■■■□□ 2.77
LMBR1-217ENST00000485985 EFCAB6Q5THR3 1501 aa32.32■■■□□ 2.76
LMBR1-217ENST00000485985 KANK1Q14678 1352 aa32.32■■■□□ 2.76
LMBR1-217ENST00000485985 EID1Q9Y6B2 187 aa32.29■■■□□ 2.76
LMBR1-217ENST00000485985 ANKRD50Q9ULJ7 1429 aa32.26■■■□□ 2.76
LMBR1-217ENST00000485985 KDM5AP29375 1690 aaKnown RBP32.26■■■□□ 2.75
LMBR1-217ENST00000485985 UNC13BO14795 1591 aa32.24■■■□□ 2.75
LMBR1-217ENST00000485985 TMEM2Q9UHN6 1383 aa32.24■■■□□ 2.75
LMBR1-217ENST00000485985 STAG3Q9UJ98 1225 aa32.23■■■□□ 2.75
LMBR1-217ENST00000485985 TET3O43151 1660 aa32.22■■■□□ 2.75
LMBR1-217ENST00000485985 SENP3Q9H4L4 574 aaPredicted RBP32.22■■■□□ 2.75
LMBR1-217ENST00000485985 IDI1Q13907 227 aa32.2■■■□□ 2.75
LMBR1-217ENST00000485985 GCC2Q8IWJ2 1684 aa32.2■■■□□ 2.74
LMBR1-217ENST00000485985 XIRP1Q702N8 1843 aaKnown RBP32.19■■■□□ 2.74
LMBR1-217ENST00000485985 NOS1P29475 1434 aa32.17■■■□□ 2.74
LMBR1-217ENST00000485985 PHF23Q9BUL5 403 aaPredicted RBP32.17■■■□□ 2.74
LMBR1-217ENST00000485985 PPARGC1BQ86YN6 1023 aaKnown RBP32.15■■■□□ 2.74
LMBR1-217ENST00000485985 MYO5BQ9ULV0 1848 aa32.14■■■□□ 2.74
LMBR1-217ENST00000485985 ADGRB3O60242 1522 aa32.13■■■□□ 2.73
LMBR1-217ENST00000485985 ROCK1Q13464 1354 aa32.13■■■□□ 2.73
LMBR1-217ENST00000485985 RPRD2Q5VT52 1461 aaKnown RBP32.12■■■□□ 2.73
LMBR1-217ENST00000485985 E9PCH4 1651 aa32.11■■■□□ 2.73
LMBR1-217ENST00000485985 IQGAP3Q86VI3 1631 aa32.11■■■□□ 2.73
LMBR1-217ENST00000485985 KCNA6P17658 529 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms