RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 PLXNC1O60486 1568 aa15.19■□□□□ 0.02
VCL-204ENST00000472585 CPS1P31327 1500 aa15.19■□□□□ 0.02
VCL-204ENST00000472585 ATP7AQ04656 1500 aa15.19■□□□□ 0.02
VCL-204ENST00000472585 CCNB3Q8WWL7 1395 aa15.18■□□□□ 0.02
VCL-204ENST00000472585 MBD5Q9P267 1494 aa15.18■□□□□ 0.02
VCL-204ENST00000472585 POLR1AO95602 1720 aaPredicted RBP15.17■□□□□ 0.02
VCL-204ENST00000472585 INO80Q9ULG1 1556 aaPredicted RBP15.17■□□□□ 0.02
VCL-204ENST00000472585 FBXO31Q5XUX0 539 aaPredicted RBP15.17■□□□□ 0.02
VCL-204ENST00000472585 A2ML1A8K2U0 1454 aa15.16■□□□□ 0.02
VCL-204ENST00000472585 DNMT1P26358 1616 aaKnown RBP15.16■□□□□ 0.02
VCL-204ENST00000472585 SHANK2Q9UPX8 1470 aa15.15■□□□□ 0.02
VCL-204ENST00000472585 PLEKHH2Q8IVE3 1493 aa15.14■□□□□ 0.01
VCL-204ENST00000472585 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
VCL-204ENST00000472585 DHX29Q7Z478 1369 aaKnown RBP15.12■□□□□ 0.01
VCL-204ENST00000472585 ADGBQ8N7X0 1667 aa15.12■□□□□ 0.01
VCL-204ENST00000472585 ANKLE2Q86XL3 938 aa15.11■□□□□ 0.01
VCL-204ENST00000472585 TIAM1Q13009 1591 aa15.1■□□□□ 0.01
VCL-204ENST00000472585 RTEL1-TNFRSF6BF6WH68 1400 aa15.09■□□□□ 0.01
VCL-204ENST00000472585 KIF3BO15066 747 aa15.09■□□□□ 0.01
VCL-204ENST00000472585 NEURL4Q96JN8 1562 aa15.09■□□□□ 0.01
VCL-204ENST00000472585 KCNA4P22459 653 aa15.08■□□□□ 0
VCL-204ENST00000472585 TNRQ92752 1358 aa15.08■□□□□ 0
VCL-204ENST00000472585 THEMISQ8N1K5 641 aaPredicted RBP15.07■□□□□ 0
VCL-204ENST00000472585 CEP162Q5TB80 1403 aa15.07■□□□□ 0
VCL-204ENST00000472585 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.06■□□□□ 0
VCL-204ENST00000472585 VWDEQ8N2E2 1590 aa15.06■□□□□ 0
VCL-204ENST00000472585 NPHP4O75161 1426 aaPredicted RBP15.04■□□□□ -0
VCL-204ENST00000472585 WASHC2CQ9Y4E1 1318 aa15.03■□□□□ -0
VCL-204ENST00000472585 RNF216Q9NWF9 866 aaPredicted RBP15.03■□□□□ -0
VCL-204ENST00000472585 ALKQ9UM73 1620 aa15.03■□□□□ -0
VCL-204ENST00000472585 FAM135AQ9P2D6 1515 aa15.02■□□□□ -0
VCL-204ENST00000472585 DEPDC5O75140 1603 aa15.02□□□□□ -0.01
VCL-204ENST00000472585 UGGT1Q9NYU2 1555 aa15.02□□□□□ -0.01
VCL-204ENST00000472585 EHBP1L1Q8N3D4 1523 aa15.02□□□□□ -0.01
VCL-204ENST00000472585 PZPP20742 1482 aa15.01□□□□□ -0.01
VCL-204ENST00000472585 MIA2Q96PC5 1412 aa15.01□□□□□ -0.01
VCL-204ENST00000472585 IQGAP1P46940 1657 aa15.01□□□□□ -0.01
VCL-204ENST00000472585 MED14O60244 1454 aa15.01□□□□□ -0.01
VCL-204ENST00000472585 NCOA2Q15596 1464 aa15.01□□□□□ -0.01
VCL-204ENST00000472585 RNF17Q9BXT8 1623 aaKnown RBP15□□□□□ -0.01
VCL-204ENST00000472585 KDM5DQ9BY66 1539 aa15□□□□□ -0.01
VCL-204ENST00000472585 CCDC141Q6ZP82 1450 aa15□□□□□ -0.01
VCL-204ENST00000472585 NLRP1Q9C000 1473 aa15□□□□□ -0.01
VCL-204ENST00000472585 RSPH4AQ5TD94 716 aa14.99□□□□□ -0.01
VCL-204ENST00000472585 CAMSAP2Q08AD1 1489 aa14.99□□□□□ -0.01
VCL-204ENST00000472585 LRRC7Q96NW7 1537 aa14.98□□□□□ -0.01
VCL-204ENST00000472585 HOXD11P31277 338 aaPredicted RBP14.98□□□□□ -0.01
VCL-204ENST00000472585 STRCP1A6NGW2 1772 aa14.98□□□□□ -0.01
VCL-204ENST00000472585 SYNMO15061 1565 aa14.98□□□□□ -0.01
VCL-204ENST00000472585 NPM3O75607 178 aaKnown RBP14.97□□□□□ -0.01
VCL-204ENST00000472585 RGS17Q9UGC6 210 aaPredicted RBP14.97□□□□□ -0.01
VCL-204ENST00000472585 KANK4Q5T7N3 995 aaPredicted RBP14.95□□□□□ -0.02
VCL-204ENST00000472585 TSPY4P0CV99 314 aa14.94□□□□□ -0.02
VCL-204ENST00000472585 TSPY10P0CW01 314 aa14.94□□□□□ -0.02
VCL-204ENST00000472585 ARHGEF5Q12774 1597 aa14.91□□□□□ -0.02
VCL-204ENST00000472585 LOC105371045A0A1W2PR82 267 aa14.91□□□□□ -0.02
VCL-204ENST00000472585 LTKP29376 864 aa14.91□□□□□ -0.02
VCL-204ENST00000472585 CFAP65Q6ZU64 1925 aaKnown RBP14.9□□□□□ -0.02
VCL-204ENST00000472585 ABCC3O15438 1527 aa14.9□□□□□ -0.02
VCL-204ENST00000472585 POTEAQ6S8J7 498 aa14.89□□□□□ -0.03
VCL-204ENST00000472585 LRRC9Q6ZRR7 1453 aa14.89□□□□□ -0.03
VCL-204ENST00000472585 ZC3H13Q5T200 1668 aaKnown RBP14.88□□□□□ -0.03
VCL-204ENST00000472585 ERVK-7P63135 1459 aa14.88□□□□□ -0.03
VCL-204ENST00000472585 MROH1Q8NDA8 1641 aa14.87□□□□□ -0.03
VCL-204ENST00000472585 XIRP1Q702N8 1843 aaKnown RBP14.87□□□□□ -0.03
VCL-204ENST00000472585 DCAF8L1A6NGE4 600 aa14.86□□□□□ -0.03
VCL-204ENST00000472585 SCAF11Q99590 1463 aaKnown RBP14.85□□□□□ -0.03
VCL-204ENST00000472585 FAM135BQ49AJ0 1406 aa14.84□□□□□ -0.03
VCL-204ENST00000472585 UBR1Q8IWV7 1749 aa14.84□□□□□ -0.03
VCL-204ENST00000472585 TXNDC2Q86VQ3 553 aa14.84□□□□□ -0.03
VCL-204ENST00000472585 EID1Q9Y6B2 187 aa14.84□□□□□ -0.03
VCL-204ENST00000472585 MAST1Q9Y2H9 1570 aa14.84□□□□□ -0.03
VCL-204ENST00000472585 SETD1AO15047 1707 aaKnown RBP14.83□□□□□ -0.04
VCL-204ENST00000472585 VPS8Q8N3P4 1428 aa14.82□□□□□ -0.04
VCL-204ENST00000472585 ARHGAP23Q9P227 1491 aa14.82□□□□□ -0.04
VCL-204ENST00000472585 RRP7BPQ9NSQ0 103 aa14.81□□□□□ -0.04
VCL-204ENST00000472585 ROBO1Q9Y6N7 1651 aa14.81□□□□□ -0.04
VCL-204ENST00000472585 MYOM3Q5VTT5 1437 aa14.8□□□□□ -0.04
VCL-204ENST00000472585 ABCC5O15440 1437 aa14.79□□□□□ -0.04
VCL-204ENST00000472585 CEP152O94986 1710 aa14.79□□□□□ -0.04
VCL-204ENST00000472585 ARHGAP31Q2M1Z3 1444 aa14.79□□□□□ -0.04
VCL-204ENST00000472585 SLIT1O75093 1534 aa14.78□□□□□ -0.04
VCL-204ENST00000472585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.78□□□□□ -0.04
VCL-204ENST00000472585 STAG3Q9UJ98 1225 aa14.78□□□□□ -0.04
VCL-204ENST00000472585 EIF2AK4Q9P2K8 1649 aaKnown RBP14.77□□□□□ -0.04
VCL-204ENST00000472585 TMEM94Q12767 1356 aa14.77□□□□□ -0.04
VCL-204ENST00000472585 KIF15Q9NS87 1388 aa14.77□□□□□ -0.04
VCL-204ENST00000472585 IDI1Q13907 227 aa14.77□□□□□ -0.05
VCL-204ENST00000472585 PROSER2Q86WR7 435 aaPredicted RBP14.77□□□□□ -0.05
VCL-204ENST00000472585 RBM33Q96EV2 1170 aaKnown RBP14.77□□□□□ -0.05
VCL-204ENST00000472585 DUOX2Q9NRD8 1548 aa14.76□□□□□ -0.05
VCL-204ENST00000472585 PHLPP1O60346 1717 aa14.75□□□□□ -0.05
VCL-204ENST00000472585 TMEM2Q9UHN6 1383 aa14.75□□□□□ -0.05
VCL-204ENST00000472585 MAP3K1Q13233 1512 aa14.75□□□□□ -0.05
VCL-204ENST00000472585 KCNA6P17658 529 aa14.74□□□□□ -0.05
VCL-204ENST00000472585 PRDM15P57071 1507 aaPredicted RBP14.73□□□□□ -0.05
VCL-204ENST00000472585 SLC26A8Q96RN1 970 aa14.73□□□□□ -0.05
VCL-204ENST00000472585 CHIC2Q9UKJ5 165 aa14.73□□□□□ -0.05
VCL-204ENST00000472585 JCADQ9P266 1359 aa14.73□□□□□ -0.05
VCL-204ENST00000472585 MEX3CQ5U5Q3 659 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms