RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 CAMSAP1Q5T5Y3 1602 aa25.73■■□□□ 1.71
COL9A3-208ENST00000469802 PTPRTO14522 1441 aa25.71■■□□□ 1.71
COL9A3-208ENST00000469802 ZC3H13Q5T200 1668 aaKnown RBP25.71■■□□□ 1.71
COL9A3-208ENST00000469802 SHANK2Q9UPX8 1470 aa25.69■■□□□ 1.7
COL9A3-208ENST00000469802 KIF3BO15066 747 aa25.69■■□□□ 1.7
COL9A3-208ENST00000469802 TSPY4P0CV99 314 aa25.69■■□□□ 1.7
COL9A3-208ENST00000469802 TSPY10P0CW01 314 aa25.69■■□□□ 1.7
COL9A3-208ENST00000469802 MROH1Q8NDA8 1641 aa25.69■■□□□ 1.7
COL9A3-208ENST00000469802 PZPP20742 1482 aa25.68■■□□□ 1.7
COL9A3-208ENST00000469802 DNMT1P26358 1616 aaKnown RBP25.68■■□□□ 1.7
COL9A3-208ENST00000469802 DMRT2Q9Y5R5 561 aa25.68■■□□□ 1.7
COL9A3-208ENST00000469802 PLA2R1Q13018 1463 aa25.66■■□□□ 1.7
COL9A3-208ENST00000469802 TCOF1Q13428 1488 aaKnown RBP25.66■■□□□ 1.7
COL9A3-208ENST00000469802 FGD6Q6ZV73 1430 aa25.63■■□□□ 1.69
COL9A3-208ENST00000469802 DUOX2Q9NRD8 1548 aa25.63■■□□□ 1.69
COL9A3-208ENST00000469802 APLP2Q06481 763 aa25.63■■□□□ 1.69
COL9A3-208ENST00000469802 A2ML1A8K2U0 1454 aa25.63■■□□□ 1.69
COL9A3-208ENST00000469802 ABCC3O15438 1527 aa25.63■■□□□ 1.69
COL9A3-208ENST00000469802 ABCC5O15440 1437 aa25.62■■□□□ 1.69
COL9A3-208ENST00000469802 CEP152O94986 1710 aa25.61■■□□□ 1.69
COL9A3-208ENST00000469802 CERKQ8TCT0 537 aa25.61■■□□□ 1.69
COL9A3-208ENST00000469802 LTBP4Q8N2S1 1624 aa25.59■■□□□ 1.69
COL9A3-208ENST00000469802 POLR1AO95602 1720 aaPredicted RBP25.59■■□□□ 1.69
COL9A3-208ENST00000469802 DAPK1P53355 1430 aa25.58■■□□□ 1.69
COL9A3-208ENST00000469802 PRDM15P57071 1507 aaPredicted RBP25.58■■□□□ 1.68
COL9A3-208ENST00000469802 DEPDC5O75140 1603 aa25.57■■□□□ 1.68
COL9A3-208ENST00000469802 WASHC2CQ9Y4E1 1318 aa25.57■■□□□ 1.68
COL9A3-208ENST00000469802 TNRQ92752 1358 aa25.56■■□□□ 1.68
COL9A3-208ENST00000469802 SPATA31D1Q6ZQQ2 1576 aa25.56■■□□□ 1.68
COL9A3-208ENST00000469802 ERBINQ96RT1 1412 aa25.54■■□□□ 1.68
COL9A3-208ENST00000469802 KIF15Q9NS87 1388 aa25.54■■□□□ 1.68
COL9A3-208ENST00000469802 FBXO31Q5XUX0 539 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-208ENST00000469802 NLRP1Q9C000 1473 aa25.52■■□□□ 1.68
COL9A3-208ENST00000469802 NEURL4Q96JN8 1562 aa25.51■■□□□ 1.67
COL9A3-208ENST00000469802 NCKAP5LQ9HCH0 1330 aa25.49■■□□□ 1.67
COL9A3-208ENST00000469802 PKD2Q13563 968 aa25.49■■□□□ 1.67
COL9A3-208ENST00000469802 IQSEC2Q5JU85 1478 aa25.48■■□□□ 1.67
COL9A3-208ENST00000469802 ERVK-7P63135 1459 aa25.47■■□□□ 1.67
COL9A3-208ENST00000469802 ADGRL2O95490 1459 aa25.46■■□□□ 1.67
COL9A3-208ENST00000469802 CFAP65Q6ZU64 1925 aaKnown RBP25.45■■□□□ 1.67
COL9A3-208ENST00000469802 UGGT1Q9NYU2 1555 aa25.45■■□□□ 1.66
COL9A3-208ENST00000469802 VWDEQ8N2E2 1590 aa25.43■■□□□ 1.66
COL9A3-208ENST00000469802 UBR1Q8IWV7 1749 aa25.41■■□□□ 1.66
COL9A3-208ENST00000469802 ARHGAP31Q2M1Z3 1444 aa25.41■■□□□ 1.66
COL9A3-208ENST00000469802 ANKRD30AQ9BXX3 1397 aa25.41■■□□□ 1.66
COL9A3-208ENST00000469802 RRP7BPQ9NSQ0 103 aa25.4■■□□□ 1.66
COL9A3-208ENST00000469802 LMTK2Q8IWU2 1503 aa25.38■■□□□ 1.65
COL9A3-208ENST00000469802 ZNF335Q9H4Z2 1342 aaPredicted RBP25.37■■□□□ 1.65
COL9A3-208ENST00000469802 MED14O60244 1454 aa25.36■■□□□ 1.65
COL9A3-208ENST00000469802 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.36■■□□□ 1.65
COL9A3-208ENST00000469802 IQGAP1P46940 1657 aa25.36■■□□□ 1.65
COL9A3-208ENST00000469802 THEMISQ8N1K5 641 aaPredicted RBP25.32■■□□□ 1.64
COL9A3-208ENST00000469802 CHIC2Q9UKJ5 165 aa25.32■■□□□ 1.64
COL9A3-208ENST00000469802 EFCAB6Q5THR3 1501 aa25.32■■□□□ 1.64
COL9A3-208ENST00000469802 KDM5AP29375 1690 aaKnown RBP25.31■■□□□ 1.64
COL9A3-208ENST00000469802 PIK3C2BO00750 1634 aa25.3■■□□□ 1.64
COL9A3-208ENST00000469802 KANK1Q14678 1352 aa25.3■■□□□ 1.64
COL9A3-208ENST00000469802 FAM50AQ14320 339 aaKnown RBP25.28■■□□□ 1.64
COL9A3-208ENST00000469802 NPHP4O75161 1426 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-208ENST00000469802 CPS1P31327 1500 aa25.27■■□□□ 1.64
COL9A3-208ENST00000469802 SYNMO15061 1565 aa25.27■■□□□ 1.64
COL9A3-208ENST00000469802 ANKLE2Q86XL3 938 aa25.27■■□□□ 1.64
COL9A3-208ENST00000469802 SLIT1O75093 1534 aa25.27■■□□□ 1.64
COL9A3-208ENST00000469802 UNC13BO14795 1591 aa25.27■■□□□ 1.64
COL9A3-208ENST00000469802 ANKRD50Q9ULJ7 1429 aa25.26■■□□□ 1.63
COL9A3-208ENST00000469802 ARHGAP23Q9P227 1491 aa25.26■■□□□ 1.63
COL9A3-208ENST00000469802 TET3O43151 1660 aa25.24■■□□□ 1.63
COL9A3-208ENST00000469802 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.24■■□□□ 1.632e-6■□□□□ 8.7
COL9A3-208ENST00000469802 STRCP1A6NGW2 1772 aa25.23■■□□□ 1.63
COL9A3-208ENST00000469802 GCC2Q8IWJ2 1684 aa25.23■■□□□ 1.63
COL9A3-208ENST00000469802 SCAF11Q99590 1463 aaKnown RBP25.21■■□□□ 1.63
COL9A3-208ENST00000469802 NOS1P29475 1434 aa25.2■■□□□ 1.63
COL9A3-208ENST00000469802 ROCK1Q13464 1354 aa25.19■■□□□ 1.62
COL9A3-208ENST00000469802 RPRD2Q5VT52 1461 aaKnown RBP25.19■■□□□ 1.62
COL9A3-208ENST00000469802 ADGRB3O60242 1522 aa25.16■■□□□ 1.62
COL9A3-208ENST00000469802 IQGAP3Q86VI3 1631 aa25.15■■□□□ 1.62
COL9A3-208ENST00000469802 MYO5BQ9ULV0 1848 aa25.13■■□□□ 1.61
COL9A3-208ENST00000469802 E9PCH4 1651 aa25.13■■□□□ 1.61
COL9A3-208ENST00000469802 TMEM2Q9UHN6 1383 aa25.11■■□□□ 1.61
COL9A3-208ENST00000469802 ALKQ9UM73 1620 aa25.09■■□□□ 1.61
COL9A3-208ENST00000469802 UBAP1LF5GYI3 381 aa25.09■■□□□ 1.61
COL9A3-208ENST00000469802 LTKP29376 864 aa25.09■■□□□ 1.61
COL9A3-208ENST00000469802 IDI1Q13907 227 aa25.08■■□□□ 1.61
COL9A3-208ENST00000469802 XIRP1Q702N8 1843 aaKnown RBP25.07■■□□□ 1.6
COL9A3-208ENST00000469802 LRRC7Q96NW7 1537 aa25.07■■□□□ 1.6
COL9A3-208ENST00000469802 TMEM131LA2VDJ0 1609 aa25.05■■□□□ 1.6
COL9A3-208ENST00000469802 RRBP1Q9P2E9 1410 aaKnown RBP25.05■■□□□ 1.6
COL9A3-208ENST00000469802 TXNDC2Q86VQ3 553 aa25.05■■□□□ 1.6
COL9A3-208ENST00000469802 PPARGC1BQ86YN6 1023 aaKnown RBP25.03■■□□□ 1.6
COL9A3-208ENST00000469802 SLC52A1Q9NWF4 448 aa25.02■■□□□ 1.6
COL9A3-208ENST00000469802 EID1Q9Y6B2 187 aa25.01■■□□□ 1.59
COL9A3-208ENST00000469802 STAG3Q9UJ98 1225 aa24.99■■□□□ 1.59
COL9A3-208ENST00000469802 ZFYVE9O95405 1425 aa24.98■■□□□ 1.59
COL9A3-208ENST00000469802 NWD1Q149M9 1564 aa24.97■■□□□ 1.59
COL9A3-208ENST00000469802 SPHKAPQ2M3C7 1700 aa24.95■■□□□ 1.59
COL9A3-208ENST00000469802 ITGAEP38570 1179 aa24.95■■□□□ 1.58
COL9A3-208ENST00000469802 TOM1O60784 492 aa24.94■■□□□ 1.58
COL9A3-208ENST00000469802 NUP155O75694 1391 aa24.93■■□□□ 1.58
COL9A3-208ENST00000469802 CHD2O14647 1828 aaKnown RBP24.9■■□□□ 1.58
COL9A3-208ENST00000469802 DISP3Q9P2K9 1392 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms