RNA–Protein interactions for RNA: ENST00000467378.1

USP11-205, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-205ENST00000467378 CCNB3Q8WWL7 1395 aa29.81■■■□□ 2.36
USP11-205ENST00000467378 DNMT1P26358 1616 aaKnown RBP29.8■■■□□ 2.36
USP11-205ENST00000467378 TOM1O60784 492 aa29.79■■■□□ 2.36
USP11-205ENST00000467378 A2ML1A8K2U0 1454 aa29.78■■■□□ 2.36
USP11-205ENST00000467378 ADGBQ8N7X0 1667 aa29.78■■■□□ 2.36
USP11-205ENST00000467378 CPS1P31327 1500 aa29.76■■■□□ 2.35
USP11-205ENST00000467378 PLEKHH2Q8IVE3 1493 aa29.74■■■□□ 2.35
USP11-205ENST00000467378 PHF23Q9BUL5 403 aaPredicted RBP29.73■■■□□ 2.35
USP11-205ENST00000467378 KIAA1107Q9UPP5 1409 aa29.72■■■□□ 2.35
USP11-205ENST00000467378 SHANK2Q9UPX8 1470 aa29.71■■■□□ 2.35
USP11-205ENST00000467378 NEURL4Q96JN8 1562 aa29.7■■■□□ 2.35
USP11-205ENST00000467378 CFDP1Q9UEE9 299 aaPredicted RBP29.7■■■□□ 2.35
USP11-205ENST00000467378 MYOM3Q5VTT5 1437 aa29.62■■■□□ 2.33
USP11-205ENST00000467378 TNRQ92752 1358 aa29.62■■■□□ 2.33
USP11-205ENST00000467378 PPARGC1BQ86YN6 1023 aaKnown RBP29.6■■■□□ 2.33
USP11-205ENST00000467378 VWDEQ8N2E2 1590 aa29.6■■■□□ 2.33
USP11-205ENST00000467378 FBXO31Q5XUX0 539 aaPredicted RBP29.59■■■□□ 2.33
USP11-205ENST00000467378 ZNF644Q9H582 1327 aaPredicted RBP29.59■■■□□ 2.33
USP11-205ENST00000467378 ANKLE2Q86XL3 938 aa29.58■■■□□ 2.33
USP11-205ENST00000467378 MIA2Q96PC5 1412 aa29.57■■■□□ 2.32
USP11-205ENST00000467378 SENP3Q9H4L4 574 aaPredicted RBP29.57■■■□□ 2.32
USP11-205ENST00000467378 ALKQ9UM73 1620 aa29.56■■■□□ 2.32
USP11-205ENST00000467378 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.56■■■□□ 2.32
USP11-205ENST00000467378 CAMSAP2Q08AD1 1489 aa29.54■■■□□ 2.32
USP11-205ENST00000467378 PZPP20742 1482 aa29.53■■■□□ 2.32
USP11-205ENST00000467378 DHX29Q7Z478 1369 aaKnown RBP29.52■■■□□ 2.32
USP11-205ENST00000467378 KDM5DQ9BY66 1539 aa29.51■■■□□ 2.32
USP11-205ENST00000467378 KIF3BO15066 747 aa29.51■■■□□ 2.31
USP11-205ENST00000467378 THEMISQ8N1K5 641 aaPredicted RBP29.51■■■□□ 2.31
USP11-205ENST00000467378 NPHP4O75161 1426 aaPredicted RBP29.51■■■□□ 2.31
USP11-205ENST00000467378 IQGAP1P46940 1657 aa29.5■■■□□ 2.31
USP11-205ENST00000467378 MBD5Q9P267 1494 aa29.5■■■□□ 2.31
USP11-205ENST00000467378 DEPDC5O75140 1603 aa29.5■■■□□ 2.31
USP11-205ENST00000467378 UGGT1Q9NYU2 1555 aa29.49■■■□□ 2.31
USP11-205ENST00000467378 RTEL1-TNFRSF6BF6WH68 1400 aa29.49■■■□□ 2.31
USP11-205ENST00000467378 FGD6Q6ZV73 1430 aa29.49■■■□□ 2.31
USP11-205ENST00000467378 STRCP1A6NGW2 1772 aa29.49■■■□□ 2.31
USP11-205ENST00000467378 PTPN23Q9H3S7 1636 aa29.49■■■□□ 2.31
USP11-205ENST00000467378 MED14O60244 1454 aa29.47■■■□□ 2.31
USP11-205ENST00000467378 FAM135AQ9P2D6 1515 aa29.46■■■□□ 2.31
USP11-205ENST00000467378 WASHC2CQ9Y4E1 1318 aa29.45■■■□□ 2.31
USP11-205ENST00000467378 NLRP1Q9C000 1473 aa29.45■■■□□ 2.31
USP11-205ENST00000467378 RNF17Q9BXT8 1623 aaKnown RBP29.45■■■□□ 2.3
USP11-205ENST00000467378 ARHGEF5Q12774 1597 aa29.43■■■□□ 2.3
USP11-205ENST00000467378 LRRC7Q96NW7 1537 aa29.41■■■□□ 2.3
USP11-205ENST00000467378 SYNMO15061 1565 aa29.41■■■□□ 2.3
USP11-205ENST00000467378 RSPH4AQ5TD94 716 aa29.4■■■□□ 2.3
USP11-205ENST00000467378 CCDC141Q6ZP82 1450 aa29.37■■■□□ 2.29
USP11-205ENST00000467378 CFAP65Q6ZU64 1925 aaKnown RBP29.32■■■□□ 2.28
USP11-205ENST00000467378 RGS17Q9UGC6 210 aaPredicted RBP29.31■■■□□ 2.28
USP11-205ENST00000467378 ZC3H13Q5T200 1668 aaKnown RBP29.31■■■□□ 2.28
USP11-205ENST00000467378 CROCC2H7BZ55 1655 aa29.29■■■□□ 2.28
USP11-205ENST00000467378 MAST1Q9Y2H9 1570 aa29.28■■■□□ 2.28
USP11-205ENST00000467378 FAM50AQ14320 339 aaKnown RBP29.28■■■□□ 2.28
USP11-205ENST00000467378 ABCC5O15440 1437 aa29.28■■■□□ 2.28
USP11-205ENST00000467378 TSPY4P0CV99 314 aa29.27■■■□□ 2.28
USP11-205ENST00000467378 TSPY10P0CW01 314 aa29.27■■■□□ 2.28
USP11-205ENST00000467378 XIRP1Q702N8 1843 aaKnown RBP29.27■■■□□ 2.28
USP11-205ENST00000467378 DAPK1P53355 1430 aa29.26■■■□□ 2.27
USP11-205ENST00000467378 RRBP1Q9P2E9 1410 aaKnown RBP29.25■■■□□ 2.27
USP11-205ENST00000467378 UBR1Q8IWV7 1749 aa29.23■■■□□ 2.27
USP11-205ENST00000467378 ABCC3O15438 1527 aa29.21■■■□□ 2.27
USP11-205ENST00000467378 ERVK-7P63135 1459 aa29.2■■■□□ 2.26
USP11-205ENST00000467378 CEP152O94986 1710 aa29.18■■■□□ 2.26
USP11-205ENST00000467378 SCAF11Q99590 1463 aaKnown RBP29.17■■■□□ 2.26
USP11-205ENST00000467378 POTEAQ6S8J7 498 aa29.14■■■□□ 2.26
USP11-205ENST00000467378 EIF2AK4Q9P2K8 1649 aaKnown RBP29.12■■■□□ 2.25
USP11-205ENST00000467378 TXNDC2Q86VQ3 553 aa29.11■■■□□ 2.25
USP11-205ENST00000467378 LTKP29376 864 aa29.1■■■□□ 2.25
USP11-205ENST00000467378 CHIC2Q9UKJ5 165 aa29.1■■■□□ 2.25
USP11-205ENST00000467378 FAM135BQ49AJ0 1406 aa29.08■■■□□ 2.25
USP11-205ENST00000467378 SETD1AO15047 1707 aaKnown RBP29.08■■■□□ 2.25
USP11-205ENST00000467378 SLIT1O75093 1534 aa29.07■■■□□ 2.24
USP11-205ENST00000467378 ADGRL2O95490 1459 aa29.07■■■□□ 2.24
USP11-205ENST00000467378 MROH1Q8NDA8 1641 aa29.07■■■□□ 2.24
USP11-205ENST00000467378 ARHGAP23Q9P227 1491 aa29.06■■■□□ 2.24
USP11-205ENST00000467378 ROBO1Q9Y6N7 1651 aa29.05■■■□□ 2.24
USP11-205ENST00000467378 ANKRD30AQ9BXX3 1397 aa29.04■■■□□ 2.24
USP11-205ENST00000467378 ITGAEP38570 1179 aa29.04■■■□□ 2.24
USP11-205ENST00000467378 EID1Q9Y6B2 187 aa29.04■■■□□ 2.24
USP11-205ENST00000467378 RRP7BPQ9NSQ0 103 aa29.03■■■□□ 2.24
USP11-205ENST00000467378 DUOX2Q9NRD8 1548 aa29.02■■■□□ 2.24
USP11-205ENST00000467378 KIF15Q9NS87 1388 aa29.01■■■□□ 2.23
USP11-205ENST00000467378 PIK3C2BO00750 1634 aa28.99■■■□□ 2.23
USP11-205ENST00000467378 TMEM94Q12767 1356 aa28.99■■■□□ 2.23
USP11-205ENST00000467378 ROCK1Q13464 1354 aa28.98■■■□□ 2.23
USP11-205ENST00000467378 STAG3Q9UJ98 1225 aa28.94■■■□□ 2.22
USP11-205ENST00000467378 PROSER2Q86WR7 435 aaPredicted RBP28.93■■■□□ 2.22
USP11-205ENST00000467378 PHLPP1O60346 1717 aa28.93■■■□□ 2.22
USP11-205ENST00000467378 ERBINQ96RT1 1412 aa28.93■■■□□ 2.22
USP11-205ENST00000467378 TMEM2Q9UHN6 1383 aa28.91■■■□□ 2.22
USP11-205ENST00000467378 RBM33Q96EV2 1170 aaKnown RBP28.91■■■□□ 2.22
USP11-205ENST00000467378 KCNA6P17658 529 aa28.9■■■□□ 2.22
USP11-205ENST00000467378 ARHGAP31Q2M1Z3 1444 aa28.9■■■□□ 2.22
USP11-205ENST00000467378 PRDM15P57071 1507 aaPredicted RBP28.88■■■□□ 2.21
USP11-205ENST00000467378 KDM5AP29375 1690 aaKnown RBP28.86■■■□□ 2.21
USP11-205ENST00000467378 SLC26A8Q96RN1 970 aa28.86■■■□□ 2.21
USP11-205ENST00000467378 EFCAB6Q5THR3 1501 aa28.85■■■□□ 2.21
USP11-205ENST00000467378 ANKRD50Q9ULJ7 1429 aa28.85■■■□□ 2.21
USP11-205ENST00000467378 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms