RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 TCOF1Q13428 1488 aaKnown RBP34.16■■■■□ 3.06
CPNE1-220ENST00000458038 A2ML1A8K2U0 1454 aa34.15■■■■□ 3.06
CPNE1-220ENST00000458038 LRRC9Q6ZRR7 1453 aa34.15■■■■□ 3.06
CPNE1-220ENST00000458038 KDM5DQ9BY66 1539 aa34.13■■■■□ 3.05
CPNE1-220ENST00000458038 WASHC2CQ9Y4E1 1318 aa34.12■■■■□ 3.05
CPNE1-220ENST00000458038 MAP3K1Q13233 1512 aa34.11■■■■□ 3.05
CPNE1-220ENST00000458038 PZPP20742 1482 aa34.09■■■■□ 3.05
CPNE1-220ENST00000458038 LOC105371045A0A1W2PR82 267 aa34.09■■■■□ 3.05
CPNE1-220ENST00000458038 TNRQ92752 1358 aa34.09■■■■□ 3.05
CPNE1-220ENST00000458038 DNMT1P26358 1616 aaKnown RBP34.08■■■■□ 3.05
CPNE1-220ENST00000458038 ZNF335Q9H4Z2 1342 aaPredicted RBP34.05■■■■□ 3.04
CPNE1-220ENST00000458038 FBXO31Q5XUX0 539 aaPredicted RBP34.04■■■■□ 3.04
CPNE1-220ENST00000458038 MIA2Q96PC5 1412 aa34.02■■■■□ 3.04
CPNE1-220ENST00000458038 MAST1Q9Y2H9 1570 aa34.02■■■■□ 3.04
CPNE1-220ENST00000458038 NLRP1Q9C000 1473 aa33.98■■■■□ 3.03
CPNE1-220ENST00000458038 MYOM3Q5VTT5 1437 aa33.97■■■■□ 3.03
CPNE1-220ENST00000458038 KANK4Q5T7N3 995 aaPredicted RBP33.97■■■■□ 3.03
CPNE1-220ENST00000458038 THEMISQ8N1K5 641 aaPredicted RBP33.97■■■■□ 3.03
CPNE1-220ENST00000458038 RNF17Q9BXT8 1623 aaKnown RBP33.96■■■■□ 3.03
CPNE1-220ENST00000458038 POLR1AO95602 1720 aaPredicted RBP33.96■■■■□ 3.03
CPNE1-220ENST00000458038 DISP3Q9P2K9 1392 aa33.95■■■■□ 3.02
CPNE1-220ENST00000458038 ANKLE2Q86XL3 938 aa33.93■■■■□ 3.02
CPNE1-220ENST00000458038 EIF2AK4Q9P2K8 1649 aaKnown RBP33.93■■■■□ 3.02
CPNE1-220ENST00000458038 ZC3H13Q5T200 1668 aaKnown RBP33.91■■■■□ 3.02
CPNE1-220ENST00000458038 UBAP1LF5GYI3 381 aa33.91■■■■□ 3.02
CPNE1-220ENST00000458038 UGGT1Q9NYU2 1555 aa33.88■■■■□ 3.01
CPNE1-220ENST00000458038 ABCC3O15438 1527 aa33.86■■■■□ 3.01
CPNE1-220ENST00000458038 APLP2Q06481 763 aa33.86■■■■□ 3.01
CPNE1-220ENST00000458038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.85■■■■□ 3.017e-10■■□□□ 13.2
CPNE1-220ENST00000458038 NEURL4Q96JN8 1562 aa33.85■■■■□ 3.01
CPNE1-220ENST00000458038 DUOX2Q9NRD8 1548 aa33.84■■■■□ 3.01
CPNE1-220ENST00000458038 CPS1P31327 1500 aa33.83■■■■□ 3.01
CPNE1-220ENST00000458038 DEPDC5O75140 1603 aa33.82■■■■□ 3
CPNE1-220ENST00000458038 SPATA31D1Q6ZQQ2 1576 aa33.81■■■■□ 3
CPNE1-220ENST00000458038 MED14O60244 1454 aa33.81■■■■□ 3
CPNE1-220ENST00000458038 SHANK2Q9UPX8 1470 aa33.8■■■■□ 3
CPNE1-220ENST00000458038 MROH1Q8NDA8 1641 aa33.76■■■■□ 3
CPNE1-220ENST00000458038 NPHP4O75161 1426 aaPredicted RBP33.76■■■□□ 2.99
CPNE1-220ENST00000458038 ERVK-7P63135 1459 aa33.76■■■□□ 2.99
CPNE1-220ENST00000458038 KIF15Q9NS87 1388 aa33.73■■■□□ 2.99
CPNE1-220ENST00000458038 TOM1O60784 492 aa33.73■■■□□ 2.99
CPNE1-220ENST00000458038 CFAP65Q6ZU64 1925 aaKnown RBP33.73■■■□□ 2.99
CPNE1-220ENST00000458038 ERBINQ96RT1 1412 aa33.72■■■□□ 2.99
CPNE1-220ENST00000458038 ILDR2Q71H61 639 aa33.72■■■□□ 2.99
CPNE1-220ENST00000458038 PTPN23Q9H3S7 1636 aa33.71■■■□□ 2.99
CPNE1-220ENST00000458038 ABCC5O15440 1437 aa33.71■■■□□ 2.99
CPNE1-220ENST00000458038 CEP152O94986 1710 aa33.71■■■□□ 2.99
CPNE1-220ENST00000458038 CROCC2H7BZ55 1655 aa33.71■■■□□ 2.99
CPNE1-220ENST00000458038 VWDEQ8N2E2 1590 aa33.69■■■□□ 2.98
CPNE1-220ENST00000458038 ARHGAP31Q2M1Z3 1444 aa33.69■■■□□ 2.98
CPNE1-220ENST00000458038 IQGAP1P46940 1657 aa33.68■■■□□ 2.98
CPNE1-220ENST00000458038 RRP7BPQ9NSQ0 103 aa33.67■■■□□ 2.98
CPNE1-220ENST00000458038 PRDM15P57071 1507 aaPredicted RBP33.67■■■□□ 2.98
CPNE1-220ENST00000458038 SOCS7O14512 581 aa33.65■■■□□ 2.98
CPNE1-220ENST00000458038 DAPK1P53355 1430 aa33.64■■■□□ 2.98
CPNE1-220ENST00000458038 FGD6Q6ZV73 1430 aa33.64■■■□□ 2.98
CPNE1-220ENST00000458038 UBR1Q8IWV7 1749 aa33.62■■■□□ 2.97
CPNE1-220ENST00000458038 KANK1Q14678 1352 aa33.61■■■□□ 2.97
CPNE1-220ENST00000458038 SCAF1Q9H7N4 1312 aaKnown RBP33.59■■■□□ 2.97
CPNE1-220ENST00000458038 ANKRD30AQ9BXX3 1397 aa33.59■■■□□ 2.97
CPNE1-220ENST00000458038 PIP4K2BP78356 416 aa33.57■■■□□ 2.96
CPNE1-220ENST00000458038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.56■■■□□ 2.962e-14■□□□□ 8.9
CPNE1-220ENST00000458038 SCAF11Q99590 1463 aaKnown RBP33.55■■■□□ 2.96
CPNE1-220ENST00000458038 SLIT1O75093 1534 aa33.53■■■□□ 2.96
CPNE1-220ENST00000458038 ARHGAP23Q9P227 1491 aa33.53■■■□□ 2.96
CPNE1-220ENST00000458038 HSPA1LP34931 641 aa33.53■■■□□ 2.96
CPNE1-220ENST00000458038 EID1Q9Y6B2 187 aa33.52■■■□□ 2.96
CPNE1-220ENST00000458038 TXNDC2Q86VQ3 553 aa33.51■■■□□ 2.95
CPNE1-220ENST00000458038 SYNMO15061 1565 aa33.49■■■□□ 2.95
CPNE1-220ENST00000458038 CHIC2Q9UKJ5 165 aa33.49■■■□□ 2.95
CPNE1-220ENST00000458038 LMTK2Q8IWU2 1503 aa33.48■■■□□ 2.95
CPNE1-220ENST00000458038 STRCP1A6NGW2 1772 aa33.48■■■□□ 2.95
CPNE1-220ENST00000458038 LTKP29376 864 aa33.48■■■□□ 2.95
CPNE1-220ENST00000458038 LRRC7Q96NW7 1537 aa33.48■■■□□ 2.95
CPNE1-220ENST00000458038 KDM5AP29375 1690 aaKnown RBP33.45■■■□□ 2.95
CPNE1-220ENST00000458038 STAG3Q9UJ98 1225 aa33.45■■■□□ 2.95
CPNE1-220ENST00000458038 PIK3C2BO00750 1634 aa33.42■■■□□ 2.94
CPNE1-220ENST00000458038 TMEM2Q9UHN6 1383 aa33.42■■■□□ 2.94
CPNE1-220ENST00000458038 ADGRL2O95490 1459 aa33.42■■■□□ 2.94
CPNE1-220ENST00000458038 ALKQ9UM73 1620 aa33.4■■■□□ 2.94
CPNE1-220ENST00000458038 IDI1Q13907 227 aa33.38■■■□□ 2.93
CPNE1-220ENST00000458038 EFCAB6Q5THR3 1501 aa33.37■■■□□ 2.93
CPNE1-220ENST00000458038 FAM50AQ14320 339 aaKnown RBP33.36■■■□□ 2.93
CPNE1-220ENST00000458038 SLC52A1Q9NWF4 448 aa33.35■■■□□ 2.93
CPNE1-220ENST00000458038 NOS1P29475 1434 aa33.34■■■□□ 2.93
CPNE1-220ENST00000458038 MED1Q15648 1581 aaPredicted RBP33.33■■■□□ 2.93
CPNE1-220ENST00000458038 ANKRD50Q9ULJ7 1429 aa33.3■■■□□ 2.92
CPNE1-220ENST00000458038 RPRD2Q5VT52 1461 aaKnown RBP33.3■■■□□ 2.92
CPNE1-220ENST00000458038 ADGRB3O60242 1522 aa33.24■■■□□ 2.91
CPNE1-220ENST00000458038 XIRP1Q702N8 1843 aaKnown RBP33.23■■■□□ 2.91
CPNE1-220ENST00000458038 KCNA6P17658 529 aa33.23■■■□□ 2.91
CPNE1-220ENST00000458038 TET3O43151 1660 aa33.22■■■□□ 2.91
CPNE1-220ENST00000458038 HDGFP51858 240 aaKnown RBP33.19■■■□□ 2.9
CPNE1-220ENST00000458038 SLC26A8Q96RN1 970 aa33.17■■■□□ 2.9
CPNE1-220ENST00000458038 PHF23Q9BUL5 403 aaPredicted RBP33.17■■■□□ 2.9
CPNE1-220ENST00000458038 TMEM94Q12767 1356 aa33.14■■■□□ 2.9
CPNE1-220ENST00000458038 ROCK1Q13464 1354 aa33.14■■■□□ 2.9
CPNE1-220ENST00000458038 GCC2Q8IWJ2 1684 aa33.13■■■□□ 2.89
CPNE1-220ENST00000458038 FAM135BQ49AJ0 1406 aa33.13■■■□□ 2.89
CPNE1-220ENST00000458038 PROSER2Q86WR7 435 aaPredicted RBP33.13■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms