RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 ZNF644Q9H582 1327 aaPredicted RBP25.04■■□□□ 1.6
CHCHD3-204ENST00000457942 NEURL4Q96JN8 1562 aa25.02■■□□□ 1.6
CHCHD3-204ENST00000457942 HSPA1LP34931 641 aa25.01■■□□□ 1.59
CHCHD3-204ENST00000457942 VPS8Q8N3P4 1428 aa25.01■■□□□ 1.59
CHCHD3-204ENST00000457942 NCOA2Q15596 1464 aa25.01■■□□□ 1.59
CHCHD3-204ENST00000457942 TNRQ92752 1358 aa24.96■■□□□ 1.59
CHCHD3-204ENST00000457942 FBXO31Q5XUX0 539 aaPredicted RBP24.96■■□□□ 1.59
CHCHD3-204ENST00000457942 CPS1P31327 1500 aa24.95■■□□□ 1.58
CHCHD3-204ENST00000457942 SENP3Q9H4L4 574 aaPredicted RBP24.94■■□□□ 1.58
CHCHD3-204ENST00000457942 KDM5DQ9BY66 1539 aa24.94■■□□□ 1.58
CHCHD3-204ENST00000457942 MBD5Q9P267 1494 aa24.94■■□□□ 1.58
CHCHD3-204ENST00000457942 CAMSAP2Q08AD1 1489 aa24.93■■□□□ 1.58
CHCHD3-204ENST00000457942 SHANK2Q9UPX8 1470 aa24.93■■□□□ 1.58
CHCHD3-204ENST00000457942 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.91■■□□□ 1.58
CHCHD3-204ENST00000457942 PZPP20742 1482 aa24.9■■□□□ 1.58
CHCHD3-204ENST00000457942 LRRC9Q6ZRR7 1453 aa24.9■■□□□ 1.58
CHCHD3-204ENST00000457942 KIF3BO15066 747 aa24.9■■□□□ 1.58
CHCHD3-204ENST00000457942 CCDC141Q6ZP82 1450 aa24.89■■□□□ 1.58
CHCHD3-204ENST00000457942 VWDEQ8N2E2 1590 aa24.89■■□□□ 1.58
CHCHD3-204ENST00000457942 DHX29Q7Z478 1369 aaKnown RBP24.89■■□□□ 1.57
CHCHD3-204ENST00000457942 TOM1O60784 492 aa24.88■■□□□ 1.57
CHCHD3-204ENST00000457942 RTEL1-TNFRSF6BF6WH68 1400 aa24.86■■□□□ 1.57
CHCHD3-204ENST00000457942 UGGT1Q9NYU2 1555 aa24.84■■□□□ 1.57
CHCHD3-204ENST00000457942 ALKQ9UM73 1620 aa24.84■■□□□ 1.57
CHCHD3-204ENST00000457942 PHF23Q9BUL5 403 aaPredicted RBP24.84■■□□□ 1.57
CHCHD3-204ENST00000457942 NPHP4O75161 1426 aaPredicted RBP24.83■■□□□ 1.57
CHCHD3-204ENST00000457942 WASHC2CQ9Y4E1 1318 aa24.83■■□□□ 1.56
CHCHD3-204ENST00000457942 IQGAP1P46940 1657 aa24.81■■□□□ 1.56
CHCHD3-204ENST00000457942 MAP3K1Q13233 1512 aa24.81■■□□□ 1.56
CHCHD3-204ENST00000457942 ANKLE2Q86XL3 938 aa24.81■■□□□ 1.56
CHCHD3-204ENST00000457942 ARHGEF5Q12774 1597 aa24.8■■□□□ 1.56
CHCHD3-204ENST00000457942 RSPH4AQ5TD94 716 aa24.8■■□□□ 1.56
CHCHD3-204ENST00000457942 FAM135AQ9P2D6 1515 aa24.8■■□□□ 1.56
CHCHD3-204ENST00000457942 DEPDC5O75140 1603 aa24.79■■□□□ 1.56
CHCHD3-204ENST00000457942 NLRP1Q9C000 1473 aa24.78■■□□□ 1.56
CHCHD3-204ENST00000457942 APLP2Q06481 763 aa24.78■■□□□ 1.56
CHCHD3-204ENST00000457942 KANK4Q5T7N3 995 aaPredicted RBP24.78■■□□□ 1.56
CHCHD3-204ENST00000457942 MIA2Q96PC5 1412 aa24.78■■□□□ 1.56
CHCHD3-204ENST00000457942 STRCP1A6NGW2 1772 aa24.77■■□□□ 1.56
CHCHD3-204ENST00000457942 TSPY4P0CV99 314 aa24.77■■□□□ 1.56
CHCHD3-204ENST00000457942 TSPY10P0CW01 314 aa24.77■■□□□ 1.56
CHCHD3-204ENST00000457942 THEMISQ8N1K5 641 aaPredicted RBP24.75■■□□□ 1.55
CHCHD3-204ENST00000457942 MED14O60244 1454 aa24.75■■□□□ 1.55
CHCHD3-204ENST00000457942 RNF17Q9BXT8 1623 aaKnown RBP24.75■■□□□ 1.55
CHCHD3-204ENST00000457942 MYOM3Q5VTT5 1437 aa24.74■■□□□ 1.55
CHCHD3-204ENST00000457942 SYNMO15061 1565 aa24.71■■□□□ 1.55
CHCHD3-204ENST00000457942 ABCC3O15438 1527 aa24.71■■□□□ 1.55
CHCHD3-204ENST00000457942 LRRC7Q96NW7 1537 aa24.71■■□□□ 1.55
CHCHD3-204ENST00000457942 ZC3H13Q5T200 1668 aaKnown RBP24.69■■□□□ 1.54
CHCHD3-204ENST00000457942 MAST1Q9Y2H9 1570 aa24.68■■□□□ 1.54
CHCHD3-204ENST00000457942 CEP152O94986 1710 aa24.67■■□□□ 1.54
CHCHD3-204ENST00000457942 ERVK-7P63135 1459 aa24.67■■□□□ 1.54
CHCHD3-204ENST00000457942 UBR1Q8IWV7 1749 aa24.64■■□□□ 1.53
CHCHD3-204ENST00000457942 MROH1Q8NDA8 1641 aa24.63■■□□□ 1.53
CHCHD3-204ENST00000457942 PTPN23Q9H3S7 1636 aa24.61■■□□□ 1.53
CHCHD3-204ENST00000457942 EIF2AK4Q9P2K8 1649 aaKnown RBP24.6■■□□□ 1.53
CHCHD3-204ENST00000457942 SCAF11Q99590 1463 aaKnown RBP24.59■■□□□ 1.53
CHCHD3-204ENST00000457942 CROCC2H7BZ55 1655 aa24.59■■□□□ 1.53
CHCHD3-204ENST00000457942 CFAP65Q6ZU64 1925 aaKnown RBP24.57■■□□□ 1.52
CHCHD3-204ENST00000457942 XIRP1Q702N8 1843 aaKnown RBP24.55■■□□□ 1.52
CHCHD3-204ENST00000457942 DUOX2Q9NRD8 1548 aa24.55■■□□□ 1.52
CHCHD3-204ENST00000457942 FGD6Q6ZV73 1430 aa24.53■■□□□ 1.52
CHCHD3-204ENST00000457942 LTKP29376 864 aa24.51■■□□□ 1.51
CHCHD3-204ENST00000457942 RGS17Q9UGC6 210 aaPredicted RBP24.51■■□□□ 1.51
CHCHD3-204ENST00000457942 KIF15Q9NS87 1388 aa24.51■■□□□ 1.51
CHCHD3-204ENST00000457942 ABCC5O15440 1437 aa24.51■■□□□ 1.51
CHCHD3-204ENST00000457942 DAPK1P53355 1430 aa24.5■■□□□ 1.51
CHCHD3-204ENST00000457942 PIK3C2BO00750 1634 aa24.49■■□□□ 1.51
CHCHD3-204ENST00000457942 SLIT1O75093 1534 aa24.48■■□□□ 1.51
CHCHD3-204ENST00000457942 TXNDC2Q86VQ3 553 aa24.48■■□□□ 1.51
CHCHD3-204ENST00000457942 ARHGAP23Q9P227 1491 aa24.48■■□□□ 1.51
CHCHD3-204ENST00000457942 RRP7BPQ9NSQ0 103 aa24.47■■□□□ 1.51
CHCHD3-204ENST00000457942 PRDM15P57071 1507 aaPredicted RBP24.46■■□□□ 1.51
CHCHD3-204ENST00000457942 ERBINQ96RT1 1412 aa24.45■■□□□ 1.51
CHCHD3-204ENST00000457942 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.42■■□□□ 1.52e-11■■□□□ 11.4
CHCHD3-204ENST00000457942 CHIC2Q9UKJ5 165 aa24.42■■□□□ 1.5
CHCHD3-204ENST00000457942 ROBO1Q9Y6N7 1651 aa24.41■■□□□ 1.5
CHCHD3-204ENST00000457942 RBM33Q96EV2 1170 aaKnown RBP24.41■■□□□ 1.5
CHCHD3-204ENST00000457942 EID1Q9Y6B2 187 aa24.41■■□□□ 1.5
CHCHD3-204ENST00000457942 ANKRD30AQ9BXX3 1397 aa24.41■■□□□ 1.5
CHCHD3-204ENST00000457942 FAM50AQ14320 339 aaKnown RBP24.4■■□□□ 1.5
CHCHD3-204ENST00000457942 SETD1AO15047 1707 aaKnown RBP24.4■■□□□ 1.5
CHCHD3-204ENST00000457942 TMEM94Q12767 1356 aa24.4■■□□□ 1.5
CHCHD3-204ENST00000457942 POTEAQ6S8J7 498 aa24.38■■□□□ 1.49
CHCHD3-204ENST00000457942 STAG3Q9UJ98 1225 aa24.38■■□□□ 1.49
CHCHD3-204ENST00000457942 KANK1Q14678 1352 aa24.37■■□□□ 1.49
CHCHD3-204ENST00000457942 TMEM2Q9UHN6 1383 aa24.37■■□□□ 1.49
CHCHD3-204ENST00000457942 ARHGAP31Q2M1Z3 1444 aa24.36■■□□□ 1.49
CHCHD3-204ENST00000457942 EFCAB6Q5THR3 1501 aa24.36■■□□□ 1.49
CHCHD3-204ENST00000457942 FAM135BQ49AJ0 1406 aa24.35■■□□□ 1.49
CHCHD3-204ENST00000457942 SLC26A8Q96RN1 970 aa24.34■■□□□ 1.49
CHCHD3-204ENST00000457942 PROSER2Q86WR7 435 aaPredicted RBP24.29■■□□□ 1.48
CHCHD3-204ENST00000457942 ADGRL2O95490 1459 aa24.29■■□□□ 1.48
CHCHD3-204ENST00000457942 ADGRB3O60242 1522 aa24.28■■□□□ 1.48
CHCHD3-204ENST00000457942 PHLPP1O60346 1717 aa24.27■■□□□ 1.48
CHCHD3-204ENST00000457942 NWD1Q149M9 1564 aa24.27■■□□□ 1.48
CHCHD3-204ENST00000457942 TET3O43151 1660 aa24.27■■□□□ 1.48
CHCHD3-204ENST00000457942 KDM5AP29375 1690 aaKnown RBP24.27■■□□□ 1.48
CHCHD3-204ENST00000457942 KCNA6P17658 529 aa24.26■■□□□ 1.47
CHCHD3-204ENST00000457942 BCANQ96GW7 911 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms