RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 PTPRKQ15262 1439 aa33.44■■■□□ 2.94
PTPN4-202ENST00000420482 CEP170BQ9Y4F5 1589 aaPredicted RBP33.43■■■□□ 2.94
PTPN4-202ENST00000420482 IQSEC2Q5JU85 1478 aa33.42■■■□□ 2.94
PTPN4-202ENST00000420482 FAM135AQ9P2D6 1515 aa33.42■■■□□ 2.94
PTPN4-202ENST00000420482 PLA2R1Q13018 1463 aa33.39■■■□□ 2.94
PTPN4-202ENST00000420482 MAST1Q9Y2H9 1570 aa33.38■■■□□ 2.93
PTPN4-202ENST00000420482 KDM5DQ9BY66 1539 aa33.35■■■□□ 2.93
PTPN4-202ENST00000420482 WASHC2CQ9Y4E1 1318 aa33.34■■■□□ 2.93
PTPN4-202ENST00000420482 TCOF1Q13428 1488 aaKnown RBP33.32■■■□□ 2.92
PTPN4-202ENST00000420482 NCKAP5LQ9HCH0 1330 aa33.28■■■□□ 2.92
PTPN4-202ENST00000420482 DNMT1P26358 1616 aaKnown RBP33.27■■■□□ 2.92
PTPN4-202ENST00000420482 A2ML1A8K2U0 1454 aa33.26■■■□□ 2.92
PTPN4-202ENST00000420482 PZPP20742 1482 aa33.25■■■□□ 2.91
PTPN4-202ENST00000420482 PTPN23Q9H3S7 1636 aa33.25■■■□□ 2.91
PTPN4-202ENST00000420482 EIF2AK4Q9P2K8 1649 aaKnown RBP33.25■■■□□ 2.91
PTPN4-202ENST00000420482 PKD2Q13563 968 aa33.25■■■□□ 2.91
PTPN4-202ENST00000420482 POLR1AO95602 1720 aaPredicted RBP33.24■■■□□ 2.91
PTPN4-202ENST00000420482 RNF17Q9BXT8 1623 aaKnown RBP33.21■■■□□ 2.91
PTPN4-202ENST00000420482 SHANK2Q9UPX8 1470 aa33.21■■■□□ 2.91
PTPN4-202ENST00000420482 DUOX2Q9NRD8 1548 aa33.21■■■□□ 2.91
PTPN4-202ENST00000420482 TNRQ92752 1358 aa33.21■■■□□ 2.91
PTPN4-202ENST00000420482 FGD6Q6ZV73 1430 aa33.19■■■□□ 2.9
PTPN4-202ENST00000420482 ZC3H13Q5T200 1668 aaKnown RBP33.18■■■□□ 2.9
PTPN4-202ENST00000420482 ZNF335Q9H4Z2 1342 aaPredicted RBP33.18■■■□□ 2.9
PTPN4-202ENST00000420482 CROCC2H7BZ55 1655 aa33.17■■■□□ 2.9
PTPN4-202ENST00000420482 FBXO31Q5XUX0 539 aaPredicted RBP33.16■■■□□ 2.9
PTPN4-202ENST00000420482 ABCC5O15440 1437 aa33.15■■■□□ 2.9
PTPN4-202ENST00000420482 KIF15Q9NS87 1388 aa33.14■■■□□ 2.9
PTPN4-202ENST00000420482 SPATA31D1Q6ZQQ2 1576 aa33.13■■■□□ 2.89
PTPN4-202ENST00000420482 NEURL4Q96JN8 1562 aa33.13■■■□□ 2.89
PTPN4-202ENST00000420482 DAPK1P53355 1430 aa33.12■■■□□ 2.89
PTPN4-202ENST00000420482 DISP3Q9P2K9 1392 aa33.12■■■□□ 2.89
PTPN4-202ENST00000420482 ABCC3O15438 1527 aa33.11■■■□□ 2.89
PTPN4-202ENST00000420482 NLRP1Q9C000 1473 aa33.11■■■□□ 2.89
PTPN4-202ENST00000420482 ERBINQ96RT1 1412 aa33.11■■■□□ 2.89
PTPN4-202ENST00000420482 RRP7BPQ9NSQ0 103 aa33.09■■■□□ 2.89
PTPN4-202ENST00000420482 ANKRD30AQ9BXX3 1397 aa33.06■■■□□ 2.88
PTPN4-202ENST00000420482 THEMISQ8N1K5 641 aaPredicted RBP33.05■■■□□ 2.88
PTPN4-202ENST00000420482 MROH1Q8NDA8 1641 aa33.03■■■□□ 2.88
PTPN4-202ENST00000420482 UGGT1Q9NYU2 1555 aa33.01■■■□□ 2.88
PTPN4-202ENST00000420482 KANK1Q14678 1352 aa33■■■□□ 2.87
PTPN4-202ENST00000420482 DEPDC5O75140 1603 aa32.99■■■□□ 2.87
PTPN4-202ENST00000420482 PRDM15P57071 1507 aaPredicted RBP32.99■■■□□ 2.87
PTPN4-202ENST00000420482 ANKLE2Q86XL3 938 aa32.99■■■□□ 2.87
PTPN4-202ENST00000420482 CEP152O94986 1710 aa32.99■■■□□ 2.87
PTPN4-202ENST00000420482 FAM50AQ14320 339 aaKnown RBP32.98■■■□□ 2.87
PTPN4-202ENST00000420482 CHIC2Q9UKJ5 165 aa32.98■■■□□ 2.87
PTPN4-202ENST00000420482 CPS1P31327 1500 aa32.97■■■□□ 2.87
PTPN4-202ENST00000420482 UBAP1LF5GYI3 381 aa32.97■■■□□ 2.87
PTPN4-202ENST00000420482 ERVK-7P63135 1459 aa32.96■■■□□ 2.87
PTPN4-202ENST00000420482 ILDR2Q71H61 639 aa32.95■■■□□ 2.87
PTPN4-202ENST00000420482 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.95■■■□□ 2.86
PTPN4-202ENST00000420482 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.94■■■□□ 2.869e-7■□□□□ 10.8
PTPN4-202ENST00000420482 MED14O60244 1454 aa32.93■■■□□ 2.86
PTPN4-202ENST00000420482 ARHGAP31Q2M1Z3 1444 aa32.92■■■□□ 2.86
PTPN4-202ENST00000420482 VWDEQ8N2E2 1590 aa32.92■■■□□ 2.86
PTPN4-202ENST00000420482 IQGAP1P46940 1657 aa32.9■■■□□ 2.86
PTPN4-202ENST00000420482 CFAP65Q6ZU64 1925 aaKnown RBP32.89■■■□□ 2.86
PTPN4-202ENST00000420482 ADGRL2O95490 1459 aa32.89■■■□□ 2.86
PTPN4-202ENST00000420482 NPHP4O75161 1426 aaPredicted RBP32.86■■■□□ 2.85
PTPN4-202ENST00000420482 UBR1Q8IWV7 1749 aa32.84■■■□□ 2.85
PTPN4-202ENST00000420482 SOCS7O14512 581 aa32.81■■■□□ 2.84
PTPN4-202ENST00000420482 LMTK2Q8IWU2 1503 aa32.8■■■□□ 2.84
PTPN4-202ENST00000420482 STRCP1A6NGW2 1772 aa32.79■■■□□ 2.84
PTPN4-202ENST00000420482 ANKRD50Q9ULJ7 1429 aa32.77■■■□□ 2.84
PTPN4-202ENST00000420482 SYNMO15061 1565 aa32.75■■■□□ 2.83
PTPN4-202ENST00000420482 STAG3Q9UJ98 1225 aa32.74■■■□□ 2.83
PTPN4-202ENST00000420482 TOM1O60784 492 aa32.72■■■□□ 2.83
PTPN4-202ENST00000420482 ALKQ9UM73 1620 aa32.72■■■□□ 2.83
PTPN4-202ENST00000420482 EID1Q9Y6B2 187 aa32.7■■■□□ 2.83
PTPN4-202ENST00000420482 SCAF11Q99590 1463 aaKnown RBP32.69■■■□□ 2.82
PTPN4-202ENST00000420482 EFCAB6Q5THR3 1501 aa32.69■■■□□ 2.82
PTPN4-202ENST00000420482 ARHGAP23Q9P227 1491 aa32.67■■■□□ 2.82
PTPN4-202ENST00000420482 SLIT1O75093 1534 aa32.67■■■□□ 2.82
PTPN4-202ENST00000420482 SCAF1Q9H7N4 1312 aaKnown RBP32.67■■■□□ 2.82
PTPN4-202ENST00000420482 TXNDC2Q86VQ3 553 aa32.66■■■□□ 2.82
PTPN4-202ENST00000420482 ROCK1Q13464 1354 aa32.66■■■□□ 2.82
PTPN4-202ENST00000420482 PIK3C2BO00750 1634 aa32.66■■■□□ 2.82
PTPN4-202ENST00000420482 PIP4K2BP78356 416 aa32.65■■■□□ 2.82
PTPN4-202ENST00000420482 LRRC7Q96NW7 1537 aa32.65■■■□□ 2.82
PTPN4-202ENST00000420482 KDM5AP29375 1690 aaKnown RBP32.65■■■□□ 2.82
PTPN4-202ENST00000420482 MED1Q15648 1581 aaPredicted RBP32.64■■■□□ 2.82
PTPN4-202ENST00000420482 RPRD2Q5VT52 1461 aaKnown RBP32.64■■■□□ 2.82
PTPN4-202ENST00000420482 HSPA1LP34931 641 aa32.63■■■□□ 2.81
PTPN4-202ENST00000420482 SLC52A1Q9NWF4 448 aa32.62■■■□□ 2.81
PTPN4-202ENST00000420482 NOS1P29475 1434 aa32.6■■■□□ 2.81
PTPN4-202ENST00000420482 IDI1Q13907 227 aa32.6■■■□□ 2.81
PTPN4-202ENST00000420482 TMEM2Q9UHN6 1383 aa32.59■■■□□ 2.81
PTPN4-202ENST00000420482 LTKP29376 864 aa32.58■■■□□ 2.81
PTPN4-202ENST00000420482 PPARGC1BQ86YN6 1023 aaKnown RBP32.58■■■□□ 2.81
PTPN4-202ENST00000420482 TET3O43151 1660 aa32.58■■■□□ 2.81
PTPN4-202ENST00000420482 XIRP1Q702N8 1843 aaKnown RBP32.57■■■□□ 2.8
PTPN4-202ENST00000420482 UNC13BO14795 1591 aa32.57■■■□□ 2.8
PTPN4-202ENST00000420482 ITGAEP38570 1179 aa32.56■■■□□ 2.8
PTPN4-202ENST00000420482 GCC2Q8IWJ2 1684 aa32.53■■■□□ 2.8
PTPN4-202ENST00000420482 ADGRB3O60242 1522 aa32.52■■■□□ 2.8
PTPN4-202ENST00000420482 HDGFP51858 240 aaKnown RBP32.45■■■□□ 2.79
PTPN4-202ENST00000420482 IQGAP3Q86VI3 1631 aa32.44■■■□□ 2.78
PTPN4-202ENST00000420482 NUP155O75694 1391 aa32.43■■■□□ 2.78
PTPN4-202ENST00000420482 BCANQ96GW7 911 aa32.39■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms