RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 TRAPPC8Q9Y2L5 1435 aa23.29■■□□□ 1.32
NUP50-202ENST00000396096 ABCA9Q8IUA7 1624 aa23.28■■□□□ 1.32
NUP50-202ENST00000396096 PRKRIP1Q9H875 184 aaPredicted RBP23.27■■□□□ 1.32
NUP50-202ENST00000396096 ZNF326Q5BKZ1 582 aaKnown RBP23.26■■□□□ 1.31
NUP50-202ENST00000396096 ZFYVE16Q7Z3T8 1539 aa23.25■■□□□ 1.31
NUP50-202ENST00000396096 TRPM1Q7Z4N2 1603 aa23.25■■□□□ 1.31
NUP50-202ENST00000396096 PRAG1Q86YV5 1406 aa23.22■■□□□ 1.31
NUP50-202ENST00000396096 DCAF11Q8TEB1 546 aa23.22■■□□□ 1.31
NUP50-202ENST00000396096 LAMC1P11047 1609 aa23.21■■□□□ 1.31
NUP50-202ENST00000396096 CARD11Q9BXL7 1154 aa23.21■■□□□ 1.31
NUP50-202ENST00000396096 ROCK2O75116 1388 aaKnown RBP23.2■■□□□ 1.31
NUP50-202ENST00000396096 DEPDC5O75140 1603 aa23.2■■□□□ 1.31
NUP50-202ENST00000396096 INO80Q9ULG1 1556 aaPredicted RBP23.2■■□□□ 1.3
NUP50-202ENST00000396096 DHX29Q7Z478 1369 aaKnown RBP23.2■■□□□ 1.3
NUP50-202ENST00000396096 A2MP01023 1474 aa23.19■■□□□ 1.3
NUP50-202ENST00000396096 SPAG9O60271 1321 aaKnown RBP23.18■■□□□ 1.3
NUP50-202ENST00000396096 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.18■■□□□ 1.33e-6■□□□□ 11.3
NUP50-202ENST00000396096 FANCAO15360 1455 aa23.18■■□□□ 1.3
NUP50-202ENST00000396096 KDM2AQ9Y2K7 1162 aa23.17■■□□□ 1.3
NUP50-202ENST00000396096 EIF2AK4Q9P2K8 1649 aaKnown RBP23.16■■□□□ 1.3
NUP50-202ENST00000396096 GPRASP1Q5JY77 1395 aa23.16■■□□□ 1.3
NUP50-202ENST00000396096 ATP7AQ04656 1500 aa23.15■■□□□ 1.3
NUP50-202ENST00000396096 E9PCH4 1651 aa23.14■■□□□ 1.3
NUP50-202ENST00000396096 ASXL2Q76L83 1435 aa23.14■■□□□ 1.29
NUP50-202ENST00000396096 CCDC184Q52MB2 194 aa23.13■■□□□ 1.29
NUP50-202ENST00000396096 HNRNPUQ00839 825 aaKnown RBP eCLIP23.12■■□□□ 1.29
NUP50-202ENST00000396096 AFAP1Q8N556 730 aa23.11■■□□□ 1.29
NUP50-202ENST00000396096 VWDEQ8N2E2 1590 aa23.11■■□□□ 1.29
NUP50-202ENST00000396096 TET3O43151 1660 aa23.1■■□□□ 1.29
NUP50-202ENST00000396096 TRPM2O94759 1503 aa23.1■■□□□ 1.29
NUP50-202ENST00000396096 PRDM15P57071 1507 aaPredicted RBP23.1■■□□□ 1.29
NUP50-202ENST00000396096 ADGRL1O94910 1474 aa23.09■■□□□ 1.29
NUP50-202ENST00000396096 ST20-MTHFSA0A0A6YYL1 179 aa23.09■■□□□ 1.29
NUP50-202ENST00000396096 SPHKAPQ2M3C7 1700 aa23.08■■□□□ 1.29
NUP50-202ENST00000396096 MRS2Q9HD23 443 aa23.08■■□□□ 1.29
NUP50-202ENST00000396096 PTPRTO14522 1441 aa23.07■■□□□ 1.28
NUP50-202ENST00000396096 RNF17Q9BXT8 1623 aaKnown RBP23.06■■□□□ 1.28
NUP50-202ENST00000396096 CEP152O94986 1710 aa23.06■■□□□ 1.28
NUP50-202ENST00000396096 SCAPERQ9BY12 1400 aa23.06■■□□□ 1.28
NUP50-202ENST00000396096 OSCARQ8IYS5 282 aa23.05■■□□□ 1.28
NUP50-202ENST00000396096 NEFLP07196 543 aa23.04■■□□□ 1.28
NUP50-202ENST00000396096 FKBP8Q14318 412 aa23.04■■□□□ 1.28
NUP50-202ENST00000396096 RGL3Q3MIN7 710 aa23.04■■□□□ 1.28
NUP50-202ENST00000396096 CFAP74Q9C0B2 1584 aa23.02■■□□□ 1.28
NUP50-202ENST00000396096 MROH1Q8NDA8 1641 aa23.02■■□□□ 1.28
NUP50-202ENST00000396096 NEURL4Q96JN8 1562 aa23.02■■□□□ 1.27
NUP50-202ENST00000396096 KTN1Q86UP2 1357 aaKnown RBP23.01■■□□□ 1.27
NUP50-202ENST00000396096 KIDINS220Q9ULH0 1771 aa23.01■■□□□ 1.27
NUP50-202ENST00000396096 MADDQ8WXG6 1647 aa23■■□□□ 1.27
NUP50-202ENST00000396096 KANK1Q14678 1352 aa23■■□□□ 1.27
NUP50-202ENST00000396096 CLTCL1P53675 1640 aa23■■□□□ 1.27
NUP50-202ENST00000396096 NBPF1Q3BBV0 1214 aa22.99■■□□□ 1.27
NUP50-202ENST00000396096 POLR3GLQ9BT43 218 aa22.99■■□□□ 1.27
NUP50-202ENST00000396096 ZBED9Q6R2W3 1325 aa22.99■■□□□ 1.27
NUP50-202ENST00000396096 COL17A1Q9UMD9 1497 aaPredicted RBP22.98■■□□□ 1.27
NUP50-202ENST00000396096 FAM9BQ8IZU0 186 aa22.98■■□□□ 1.27
NUP50-202ENST00000396096 STAC3Q96MF2 364 aa22.98■■□□□ 1.27
NUP50-202ENST00000396096 ZNF518AQ6AHZ1 1483 aa22.97■■□□□ 1.27
NUP50-202ENST00000396096 NPM1P06748 294 aaKnown RBP eCLIP22.95■■□□□ 1.26
NUP50-202ENST00000396096 IQGAP1P46940 1657 aa22.94■■□□□ 1.26
NUP50-202ENST00000396096 LMTK2Q8IWU2 1503 aa22.92■■□□□ 1.26
NUP50-202ENST00000396096 TESK2Q96S53 571 aa22.92■■□□□ 1.26
NUP50-202ENST00000396096 EFCAB6Q5THR3 1501 aa22.91■■□□□ 1.26
NUP50-202ENST00000396096 KIAA1210Q9ULL0 1709 aa22.9■■□□□ 1.26
NUP50-202ENST00000396096 KIF3BO15066 747 aa22.9■■□□□ 1.26
NUP50-202ENST00000396096 RALBP1Q15311 655 aa22.9■■□□□ 1.26
NUP50-202ENST00000396096 CD109Q6YHK3 1445 aa22.89■■□□□ 1.26
NUP50-202ENST00000396096 POGZQ7Z3K3 1410 aa22.89■■□□□ 1.25
NUP50-202ENST00000396096 MLH3Q9UHC1 1453 aa22.88■■□□□ 1.25
NUP50-202ENST00000396096 BRD4O60885 1362 aaPredicted RBP22.88■■□□□ 1.25
NUP50-202ENST00000396096 DISP3Q9P2K9 1392 aa22.86■■□□□ 1.25
NUP50-202ENST00000396096 MYBBP1AQ9BQG0 1328 aaKnown RBP22.86■■□□□ 1.25
NUP50-202ENST00000396096 BCANQ96GW7 911 aa22.86■■□□□ 1.25
NUP50-202ENST00000396096 PPRC1Q5VV67 1664 aaKnown RBP22.86■■□□□ 1.25
NUP50-202ENST00000396096 HECW2Q9P2P5 1572 aa22.85■■□□□ 1.25
NUP50-202ENST00000396096 PNISRQ8TF01 805 aaKnown RBP22.85■■□□□ 1.25
NUP50-202ENST00000396096 PARD3Q8TEW0 1356 aa22.84■■□□□ 1.25
NUP50-202ENST00000396096 WASHC2CQ9Y4E1 1318 aa22.84■■□□□ 1.25
NUP50-202ENST00000396096 KIF1BO60333 1816 aa22.84■■□□□ 1.25
NUP50-202ENST00000396096 MYT1LQ9UL68 1186 aa22.84■■□□□ 1.25
NUP50-202ENST00000396096 MYOM2P54296 1465 aa22.83■■□□□ 1.25
NUP50-202ENST00000396096 IFT172Q9UG01 1749 aa22.83■■□□□ 1.25
NUP50-202ENST00000396096 FRMPD1Q5SYB0 1578 aa22.83■■□□□ 1.24
NUP50-202ENST00000396096 PER1O15534 1290 aaPredicted RBP22.83■■□□□ 1.24
NUP50-202ENST00000396096 ERICH6BQ5W0A0 696 aa22.83■■□□□ 1.24
NUP50-202ENST00000396096 LRPPRCP42704 1394 aaKnown RBP22.83■■□□□ 1.24
NUP50-202ENST00000396096 TMF1P82094 1093 aa22.82■■□□□ 1.24
NUP50-202ENST00000396096 NEO1Q92859 1461 aa22.82■■□□□ 1.24
NUP50-202ENST00000396096 SCAF11Q99590 1463 aaKnown RBP22.82■■□□□ 1.24
NUP50-202ENST00000396096 TMC1Q8TDI8 760 aa22.8■■□□□ 1.24
NUP50-202ENST00000396096 MAP3K4Q9Y6R4 1608 aa22.8■■□□□ 1.24
NUP50-202ENST00000396096 SMG6Q86US8 1419 aaKnown RBP22.79■■□□□ 1.24
NUP50-202ENST00000396096 ABCA6Q8N139 1617 aa22.77■■□□□ 1.24
NUP50-202ENST00000396096 UGGT1Q9NYU2 1555 aa22.77■■□□□ 1.24
NUP50-202ENST00000396096 TSHZ2Q9NRE2 1034 aa22.77■■□□□ 1.24
NUP50-202ENST00000396096 MROH2AA6NES4 1674 aa22.76■■□□□ 1.23
NUP50-202ENST00000396096 CNGB1Q14028 1251 aaPredicted RBP22.75■■□□□ 1.23
NUP50-202ENST00000396096 NLRP13Q86W25 1043 aa22.75■■□□□ 1.23
NUP50-202ENST00000396096 NRXN1Q9ULB1 1477 aa22.74■■□□□ 1.23
NUP50-202ENST00000396096 ADGRB3O60242 1522 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms