RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 NISCHQ9Y2I1 1504 aa36.31■■■■□ 3.4
NUP50-202ENST00000396096 CCDC180Q9P1Z9 1646 aa31.31■■■□□ 2.6
NUP50-202ENST00000396096 ZCCHC6Q5VYS8 1495 aaKnown RBP30.67■■■□□ 2.5
NUP50-202ENST00000396096 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
NUP50-202ENST00000396096 DCAF1Q9Y4B6 1507 aa30.04■■■□□ 2.4
NUP50-202ENST00000396096 DCAF8L2P0C7V8 631 aa29.65■■■□□ 2.34
NUP50-202ENST00000396096 MYO15BQ96JP2 1530 aa29.39■■■□□ 2.29
NUP50-202ENST00000396096 SUPT5HO00267 1087 aaKnown RBP29.35■■■□□ 2.29
NUP50-202ENST00000396096 NACADO15069 1562 aa28.96■■■□□ 2.23
NUP50-202ENST00000396096 SCRIBQ14160 1630 aa28.9■■■□□ 2.22
NUP50-202ENST00000396096 ABCC9O60706 1549 aa28.89■■■□□ 2.22
NUP50-202ENST00000396096 CHIC1Q5VXU3 224 aa28.54■■■□□ 2.16
NUP50-202ENST00000396096 RB1CC1Q8TDY2 1594 aa28.53■■■□□ 2.16
NUP50-202ENST00000396096 RSF1Q96T23 1441 aaPredicted RBP28.46■■■□□ 2.15
NUP50-202ENST00000396096 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
NUP50-202ENST00000396096 MROH2BQ7Z745 1585 aa28.1■■■□□ 2.09
NUP50-202ENST00000396096 UNC13AQ9UPW8 1703 aa28.07■■■□□ 2.08
NUP50-202ENST00000396096 BAZ1AQ9NRL2 1556 aaPredicted RBP27.96■■■□□ 2.07
NUP50-202ENST00000396096 WIZO95785 1651 aa27.92■■■□□ 2.06
NUP50-202ENST00000396096 SMARCA4P51532 1647 aa27.77■■■□□ 2.04
NUP50-202ENST00000396096 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
NUP50-202ENST00000396096 TOP2AP11388 1531 aaKnown RBP27.63■■■□□ 2.01
NUP50-202ENST00000396096 EIF4G1Q04637 1599 aaKnown RBP27.55■■■□□ 2
NUP50-202ENST00000396096 TRIM41Q8WV44 630 aa27.53■■■□□ 2
NUP50-202ENST00000396096 LOC105371045A0A1W2PR82 267 aa27.47■■□□□ 1.99
NUP50-202ENST00000396096 SMARCA2P51531 1590 aa27.41■■□□□ 1.98
NUP50-202ENST00000396096 PEG3Q9GZU2 1588 aa27.4■■□□□ 1.98
NUP50-202ENST00000396096 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.98
NUP50-202ENST00000396096 CCDC88BA6NC98 1476 aa27.36■■□□□ 1.97
NUP50-202ENST00000396096 ATAD2BQ9ULI0 1458 aa27.1■■□□□ 1.93
NUP50-202ENST00000396096 FAM9AQ8IZU1 332 aaPredicted RBP27.05■■□□□ 1.92
NUP50-202ENST00000396096 ABCC8Q09428 1581 aa27.04■■□□□ 1.92
NUP50-202ENST00000396096 PCGF6Q9BYE7 350 aa27■■□□□ 1.91
NUP50-202ENST00000396096 BAZ1BQ9UIG0 1483 aaKnown RBP26.97■■□□□ 1.91
NUP50-202ENST00000396096 HRCP23327 699 aa26.89■■□□□ 1.9
NUP50-202ENST00000396096 TRIM26Q12899 539 aaPredicted RBP26.82■■□□□ 1.88
NUP50-202ENST00000396096 EEA1Q15075 1411 aa26.78■■□□□ 1.88
NUP50-202ENST00000396096 HMGXB3Q12766 1538 aa26.77■■□□□ 1.88
NUP50-202ENST00000396096 WRNQ14191 1432 aaPredicted RBP eCLIP26.75■■□□□ 1.87
NUP50-202ENST00000396096 NCAPD3P42695 1498 aa26.73■■□□□ 1.87
NUP50-202ENST00000396096 SOGA1O94964 1423 aa26.68■■□□□ 1.86
NUP50-202ENST00000396096 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
NUP50-202ENST00000396096 EHMT2Q96KQ7 1210 aa26.62■■□□□ 1.85
NUP50-202ENST00000396096 RUSC2Q8N2Y8 1516 aa26.55■■□□□ 1.84
NUP50-202ENST00000396096 CSRNP3Q8WYN3 585 aa26.53■■□□□ 1.84
NUP50-202ENST00000396096 TNIKQ9UKE5 1360 aa26.51■■□□□ 1.84
NUP50-202ENST00000396096 TOP2BQ02880 1626 aa26.47■■□□□ 1.83
NUP50-202ENST00000396096 BIVM-ERCC5R4GMW8 1640 aa26.45■■□□□ 1.82
NUP50-202ENST00000396096 GOLGA3Q08378 1498 aa26.44■■□□□ 1.82
NUP50-202ENST00000396096 CEP162Q5TB80 1403 aa26.42■■□□□ 1.82
NUP50-202ENST00000396096 KIF21BO75037 1637 aa26.42■■□□□ 1.82
NUP50-202ENST00000396096 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
NUP50-202ENST00000396096 CFTRP13569 1480 aa26.36■■□□□ 1.81
NUP50-202ENST00000396096 PRDM2Q13029 1718 aa26.32■■□□□ 1.8
NUP50-202ENST00000396096 UBTFP17480 764 aaKnown RBP26.23■■□□□ 1.79
NUP50-202ENST00000396096 CUX1P39880 1505 aa26.21■■□□□ 1.79
NUP50-202ENST00000396096 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
NUP50-202ENST00000396096 ZEB1P37275 1124 aaPredicted RBP26.15■■□□□ 1.78
NUP50-202ENST00000396096 PPARGC1BQ86YN6 1023 aaKnown RBP26.14■■□□□ 1.78
NUP50-202ENST00000396096 RAPGEF2Q9Y4G8 1499 aa26.1■■□□□ 1.77
NUP50-202ENST00000396096 ERICH3Q5RHP9 1530 aa26.09■■□□□ 1.77
NUP50-202ENST00000396096 CADPSQ9ULU8 1353 aa26.09■■□□□ 1.77
NUP50-202ENST00000396096 PRXQ9BXM0 1461 aa26.05■■□□□ 1.76
NUP50-202ENST00000396096 CLIP1P30622 1438 aa26.03■■□□□ 1.76
NUP50-202ENST00000396096 KIF27Q86VH2 1401 aa25.99■■□□□ 1.75
NUP50-202ENST00000396096 VPS8Q8N3P4 1428 aa25.93■■□□□ 1.74
NUP50-202ENST00000396096 FANCD2Q9BXW9 1451 aa25.81■■□□□ 1.72
NUP50-202ENST00000396096 FGD5Q6ZNL6 1462 aa25.79■■□□□ 1.72
NUP50-202ENST00000396096 CUX2O14529 1486 aa25.76■■□□□ 1.71
NUP50-202ENST00000396096 DNMBPQ6XZF7 1577 aa25.73■■□□□ 1.71
NUP50-202ENST00000396096 ARAP1Q96P48 1450 aa25.72■■□□□ 1.71
NUP50-202ENST00000396096 IGF1RP08069 1367 aa25.71■■□□□ 1.71
NUP50-202ENST00000396096 TTBK1Q5TCY1 1321 aaPredicted RBP25.7■■□□□ 1.71
NUP50-202ENST00000396096 LAMC3Q9Y6N6 1575 aa25.7■■□□□ 1.7
NUP50-202ENST00000396096 NESP48681 1621 aa25.64■■□□□ 1.69
NUP50-202ENST00000396096 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.64■■□□□ 1.69
NUP50-202ENST00000396096 TOPBP1Q92547 1522 aa25.63■■□□□ 1.69
NUP50-202ENST00000396096 APLP2Q06481 763 aa25.62■■□□□ 1.69
NUP50-202ENST00000396096 CCER1Q8TC90 406 aaPredicted RBP25.6■■□□□ 1.69
NUP50-202ENST00000396096 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
NUP50-202ENST00000396096 ARHGAP35Q9NRY4 1499 aa25.57■■□□□ 1.68
NUP50-202ENST00000396096 CARMIL1Q5VZK9 1371 aa25.57■■□□□ 1.68
NUP50-202ENST00000396096 POLA1P09884 1462 aaPredicted RBP25.56■■□□□ 1.68
NUP50-202ENST00000396096 RANGAP1P46060 587 aaPredicted RBP25.56■■□□□ 1.68
NUP50-202ENST00000396096 RAD54L2Q9Y4B4 1467 aa25.49■■□□□ 1.67
NUP50-202ENST00000396096 WDR97A6NE52 1622 aa25.48■■□□□ 1.67
NUP50-202ENST00000396096 URB2Q14146 1524 aaKnown RBP25.47■■□□□ 1.67
NUP50-202ENST00000396096 CUL7Q14999 1698 aa25.46■■□□□ 1.67
NUP50-202ENST00000396096 PDS5BQ9NTI5 1447 aa25.44■■□□□ 1.66
NUP50-202ENST00000396096 MAP3K1Q13233 1512 aa25.37■■□□□ 1.65
NUP50-202ENST00000396096 KIF21AQ7Z4S6 1674 aa25.35■■□□□ 1.65
NUP50-202ENST00000396096 ABCA5Q8WWZ7 1642 aa25.34■■□□□ 1.65
NUP50-202ENST00000396096 KANK4Q5T7N3 995 aaPredicted RBP25.32■■□□□ 1.64
NUP50-202ENST00000396096 HNRNPUL2Q1KMD3 747 aaKnown RBP25.31■■□□□ 1.64
NUP50-202ENST00000396096 RRBP1Q9P2E9 1410 aaKnown RBP25.3■■□□□ 1.64
NUP50-202ENST00000396096 CTTNBP2Q8WZ74 1663 aa25.3■■□□□ 1.64
NUP50-202ENST00000396096 DNAJC5BQ9UF47 199 aa25.3■■□□□ 1.64
NUP50-202ENST00000396096 EFCAB5A4FU69 1503 aa25.28■■□□□ 1.64
NUP50-202ENST00000396096 TIAM1Q13009 1591 aa25.27■■□□□ 1.64
NUP50-202ENST00000396096 FHAD1B1AJZ9 1412 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms