RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PLCH2O75038 1416 aa11.28□□□□□ -0.6
LIMS1-203ENST00000393310 PDE3BQ13370 1112 aa11.27□□□□□ -0.6
LIMS1-203ENST00000393310 ZMYM3Q14202 1370 aa11.27□□□□□ -0.61
LIMS1-203ENST00000393310 PKNOX2Q96KN3 472 aa11.26□□□□□ -0.61
LIMS1-203ENST00000393310 TRPC5Q9UL62 973 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-203ENST00000393310 CSB-PGBD3P0DP91 1061 aa11.26□□□□□ -0.61
LIMS1-203ENST00000393310 HSPA1LP34931 641 aa11.26□□□□□ -0.61
LIMS1-203ENST00000393310 ARAP3Q8WWN8 1544 aa11.25□□□□□ -0.61
LIMS1-203ENST00000393310 CDK11BP21127 795 aaKnown RBP11.25□□□□□ -0.61
LIMS1-203ENST00000393310 CHIC2Q9UKJ5 165 aa11.25□□□□□ -0.61
LIMS1-203ENST00000393310 HECW2Q9P2P5 1572 aa11.25□□□□□ -0.61
LIMS1-203ENST00000393310 HRCP23327 699 aa11.24□□□□□ -0.61
LIMS1-203ENST00000393310 RBM33Q96EV2 1170 aaKnown RBP11.23□□□□□ -0.61
LIMS1-203ENST00000393310 ADRA2BP18089 450 aa11.23□□□□□ -0.61
LIMS1-203ENST00000393310 C8orf37Q96NL8 207 aa11.23□□□□□ -0.61
LIMS1-203ENST00000393310 KCNA6P17658 529 aa11.23□□□□□ -0.61
LIMS1-203ENST00000393310 RBM6P78332 1123 aaKnown RBP11.23□□□□□ -0.61
LIMS1-203ENST00000393310 KLHL34Q8N239 644 aa11.23□□□□□ -0.61
LIMS1-203ENST00000393310 SPATA31A6Q5VVP1 1343 aa11.22□□□□□ -0.61
LIMS1-203ENST00000393310 RTL5Q5HYW3 569 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-203ENST00000393310 RRP7BPQ9NSQ0 103 aa11.22□□□□□ -0.61
LIMS1-203ENST00000393310 PCF11O94913 1555 aaKnown RBP11.22□□□□□ -0.61
LIMS1-203ENST00000393310 ZEB1P37275 1124 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-203ENST00000393310 C19orf44Q9H6X5 657 aa11.22□□□□□ -0.61
LIMS1-203ENST00000393310 JCADQ9P266 1359 aa11.21□□□□□ -0.61
LIMS1-203ENST00000393310 NGDNQ8NEJ9 315 aaKnown RBP11.21□□□□□ -0.61
LIMS1-203ENST00000393310 PDE4CQ08493 712 aa11.21□□□□□ -0.61
LIMS1-203ENST00000393310 FYCO1Q9BQS8 1478 aa11.21□□□□□ -0.61
LIMS1-203ENST00000393310 ADAMTS2O95450 1211 aa11.21□□□□□ -0.62
LIMS1-203ENST00000393310 NPATQ14207 1427 aa11.2□□□□□ -0.62
LIMS1-203ENST00000393310 PAK3O75914 559 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-203ENST00000393310 GPRASP1Q5JY77 1395 aa11.2□□□□□ -0.62
LIMS1-203ENST00000393310 BIVM-ERCC5R4GMW8 1640 aa11.2□□□□□ -0.62
LIMS1-203ENST00000393310 ATP10BO94823 1461 aa11.2□□□□□ -0.62
LIMS1-203ENST00000393310 ZNF335Q9H4Z2 1342 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-203ENST00000393310 WASHC2AQ641Q2 1341 aa11.19□□□□□ -0.62
LIMS1-203ENST00000393310 NEFMP07197 916 aa11.19□□□□□ -0.62
LIMS1-203ENST00000393310 RPRD2Q5VT52 1461 aaKnown RBP11.19□□□□□ -0.62
LIMS1-203ENST00000393310 ATAD2Q6PL18 1390 aa11.19□□□□□ -0.62
LIMS1-203ENST00000393310 RUSC2Q8N2Y8 1516 aa11.18□□□□□ -0.62
LIMS1-203ENST00000393310 MSH5O43196 834 aa11.18□□□□□ -0.62
LIMS1-203ENST00000393310 ANP32EQ9BTT0 268 aa11.18□□□□□ -0.62
LIMS1-203ENST00000393310 EIF3AQ14152 1382 aaKnown RBP11.18□□□□□ -0.62
LIMS1-203ENST00000393310 HECW1Q76N89 1606 aa11.18□□□□□ -0.62
LIMS1-203ENST00000393310 KIF14Q15058 1648 aa11.17□□□□□ -0.62
LIMS1-203ENST00000393310 QTRT2Q9H974 415 aaKnown RBP11.17□□□□□ -0.62
LIMS1-203ENST00000393310 NPHP1O15259 732 aa11.17□□□□□ -0.62
LIMS1-203ENST00000393310 IQSEC2Q5JU85 1478 aa11.17□□□□□ -0.62
LIMS1-203ENST00000393310 NPHP4O75161 1426 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-203ENST00000393310 POLD1P28340 1107 aa11.16□□□□□ -0.62
LIMS1-203ENST00000393310 C16orf71Q8IYS4 520 aaPredicted RBP11.16□□□□□ -0.62
LIMS1-203ENST00000393310 TMX4Q9H1E5 349 aaPredicted RBP11.16□□□□□ -0.62
LIMS1-203ENST00000393310 PDIA4P13667 645 aaKnown RBP11.16□□□□□ -0.62
LIMS1-203ENST00000393310 SLC26A8Q96RN1 970 aa11.16□□□□□ -0.62
LIMS1-203ENST00000393310 SLAIN2Q9P270 581 aa11.16□□□□□ -0.62
LIMS1-203ENST00000393310 KIAA0556O60303 1618 aa11.16□□□□□ -0.62
LIMS1-203ENST00000393310 NPHP3Q7Z494 1330 aa11.15□□□□□ -0.62
LIMS1-203ENST00000393310 A2MP01023 1474 aa11.15□□□□□ -0.62
LIMS1-203ENST00000393310 LRRC9Q6ZRR7 1453 aa11.14□□□□□ -0.63
LIMS1-203ENST00000393310 USP21Q9UK80 565 aa11.14□□□□□ -0.63
LIMS1-203ENST00000393310 DHX29Q7Z478 1369 aaKnown RBP11.13□□□□□ -0.63
LIMS1-203ENST00000393310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIMS1-203ENST00000393310 ABCA8O94911 1581 aa11.13□□□□□ -0.63
LIMS1-203ENST00000393310 ESCO1Q5FWF5 840 aa11.13□□□□□ -0.63
LIMS1-203ENST00000393310 SETD1BQ9UPS6 1966 aaKnown RBP11.12□□□□□ -0.63
LIMS1-203ENST00000393310 NCOA2Q15596 1464 aa11.11□□□□□ -0.63
LIMS1-203ENST00000393310 CPS1P31327 1500 aa11.1□□□□□ -0.63
LIMS1-203ENST00000393310 MYOM3Q5VTT5 1437 aa11.1□□□□□ -0.63
LIMS1-203ENST00000393310 NLRP1Q9C000 1473 aa11.09□□□□□ -0.63
LIMS1-203ENST00000393310 MIA2Q96PC5 1412 aa11.09□□□□□ -0.63
LIMS1-203ENST00000393310 PRDM11Q9NQV5 511 aa11.09□□□□□ -0.63
LIMS1-203ENST00000393310 BCL11BQ9C0K0 894 aaPredicted RBP11.08□□□□□ -0.64
LIMS1-203ENST00000393310 SHROOM2Q13796 1616 aa11.08□□□□□ -0.64
LIMS1-203ENST00000393310 STK32BQ9NY57 414 aa11.08□□□□□ -0.64
LIMS1-203ENST00000393310 ADCY10Q96PN6 1610 aa11.08□□□□□ -0.64
LIMS1-203ENST00000393310 SPATA31D1Q6ZQQ2 1576 aa11.08□□□□□ -0.64
LIMS1-203ENST00000393310 SRPK2P78362 688 aaKnown RBP11.07□□□□□ -0.64
LIMS1-203ENST00000393310 RAPGEF6Q8TEU7 1601 aa11.07□□□□□ -0.64
LIMS1-203ENST00000393310 PLCB2Q00722 1185 aa11.07□□□□□ -0.64
LIMS1-203ENST00000393310 TBX22Q9Y458 520 aa11.07□□□□□ -0.64
LIMS1-203ENST00000393310 KIAA1107Q9UPP5 1409 aa11.06□□□□□ -0.64
LIMS1-203ENST00000393310 STK26Q9P289 416 aa11.06□□□□□ -0.64
LIMS1-203ENST00000393310 RTEL1-TNFRSF6BF6WH68 1400 aa11.05□□□□□ -0.64
LIMS1-203ENST00000393310 ZCCHC11Q5TAX3 1644 aaKnown RBP11.04□□□□□ -0.64
LIMS1-203ENST00000393310 A2ML1A8K2U0 1454 aa11.04□□□□□ -0.64
LIMS1-203ENST00000393310 CASKIN1Q8WXD9 1431 aa11.04□□□□□ -0.64
LIMS1-203ENST00000393310 DISP1Q96F81 1524 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 ARHGAP35Q9NRY4 1499 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 KIF15Q9NS87 1388 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 EIF4G2P78344 907 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIMS1-203ENST00000393310 A0A0U1RQG5 324 aaPredicted RBP11.03□□□□□ -0.64
LIMS1-203ENST00000393310 HMGB1P09429 215 aaKnown RBP11.03□□□□□ -0.64
LIMS1-203ENST00000393310 GPR162Q16538 588 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 UBE2Q2Q8WVN8 375 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 AMOTL2Q9Y2J4 779 aa11.03□□□□□ -0.64
LIMS1-203ENST00000393310 FBXO31Q5XUX0 539 aaPredicted RBP11.02□□□□□ -0.64
LIMS1-203ENST00000393310 CCDC141Q6ZP82 1450 aa11.02□□□□□ -0.64
LIMS1-203ENST00000393310 STAC3Q96MF2 364 aa11.02□□□□□ -0.65
LIMS1-203ENST00000393310 GTF3C3Q9Y5Q9 886 aa11.02□□□□□ -0.65
LIMS1-203ENST00000393310 NUP155O75694 1391 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms