RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 NISCHQ9Y2I1 1504 aa16.41■□□□□ 0.22
LIMS1-203ENST00000393310 DCAF8L2P0C7V8 631 aa15.79■□□□□ 0.12
LIMS1-203ENST00000393310 ABCC9O60706 1549 aa15.31■□□□□ 0.04
LIMS1-203ENST00000393310 PABPN1Q86U42 306 aaKnown RBP eCLIP14.52□□□□□ -0.08
LIMS1-203ENST00000393310 RB1CC1Q8TDY2 1594 aa14.49□□□□□ -0.09
LIMS1-203ENST00000393310 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
LIMS1-203ENST00000393310 FAM9AQ8IZU1 332 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-203ENST00000393310 NACADO15069 1562 aa14.19□□□□□ -0.14
LIMS1-203ENST00000393310 MYT1Q01538 1121 aa14.13□□□□□ -0.15
LIMS1-203ENST00000393310 AEBP2Q6ZN18 517 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-203ENST00000393310 ERCC6Q03468 1493 aa14□□□□□ -0.17
LIMS1-203ENST00000393310 CECR2Q9BXF3 1484 aa13.9□□□□□ -0.18
LIMS1-203ENST00000393310 TRIM41Q8WV44 630 aa13.88□□□□□ -0.19
LIMS1-203ENST00000393310 PELP1Q8IZL8 1130 aaKnown RBP13.88□□□□□ -0.19
LIMS1-203ENST00000393310 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
LIMS1-203ENST00000393310 DNAJC5BQ9UF47 199 aa13.75□□□□□ -0.21
LIMS1-203ENST00000393310 TRHP20396 242 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-203ENST00000393310 DNAJC5Q9H3Z4 198 aa13.7□□□□□ -0.22
LIMS1-203ENST00000393310 SCRIBQ14160 1630 aa13.69□□□□□ -0.22
LIMS1-203ENST00000393310 NPM1P06748 294 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIMS1-203ENST00000393310 MYO15BQ96JP2 1530 aa13.58□□□□□ -0.24
LIMS1-203ENST00000393310 FBLN2P98095 1184 aa13.57□□□□□ -0.24
LIMS1-203ENST00000393310 SLC24A1O60721 1099 aa13.52□□□□□ -0.25
LIMS1-203ENST00000393310 OSCARQ8IYS5 282 aa13.51□□□□□ -0.25
LIMS1-203ENST00000393310 PDS5BQ9NTI5 1447 aa13.51□□□□□ -0.25
LIMS1-203ENST00000393310 CHIC1Q5VXU3 224 aa13.42□□□□□ -0.26
LIMS1-203ENST00000393310 TTBK1Q5TCY1 1321 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-203ENST00000393310 CUX2O14529 1486 aa13.36□□□□□ -0.27
LIMS1-203ENST00000393310 EHMT2Q96KQ7 1210 aa13.35□□□□□ -0.27
LIMS1-203ENST00000393310 DCAF1Q9Y4B6 1507 aa13.3□□□□□ -0.28
LIMS1-203ENST00000393310 CHMP7Q8WUX9 453 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-203ENST00000393310 ERICH6Q7L0X2 663 aa13.28□□□□□ -0.28
LIMS1-203ENST00000393310 BAZ1BQ9UIG0 1483 aaKnown RBP13.27□□□□□ -0.29
LIMS1-203ENST00000393310 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
LIMS1-203ENST00000393310 SMARCA2P51531 1590 aa13.23□□□□□ -0.29
LIMS1-203ENST00000393310 EIF4G1Q04637 1599 aaKnown RBP13.23□□□□□ -0.29
LIMS1-203ENST00000393310 ZCCHC6Q5VYS8 1495 aaKnown RBP13.23□□□□□ -0.29
LIMS1-203ENST00000393310 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
LIMS1-203ENST00000393310 CYB5RLQ6IPT4 315 aa13.13□□□□□ -0.31
LIMS1-203ENST00000393310 ESF1Q9H501 851 aaKnown RBP13.06□□□□□ -0.32
LIMS1-203ENST00000393310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-203ENST00000393310 HNRNPUL2Q1KMD3 747 aaKnown RBP13.01□□□□□ -0.33
LIMS1-203ENST00000393310 NCAPD3P42695 1498 aa13□□□□□ -0.33
LIMS1-203ENST00000393310 CADPSQ9ULU8 1353 aa13□□□□□ -0.33
LIMS1-203ENST00000393310 CEP164Q9UPV0 1460 aa12.98□□□□□ -0.33
LIMS1-203ENST00000393310 BAZ1AQ9NRL2 1556 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-203ENST00000393310 SUPT5HO00267 1087 aaKnown RBP12.97□□□□□ -0.33
LIMS1-203ENST00000393310 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
LIMS1-203ENST00000393310 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.35
LIMS1-203ENST00000393310 ATAD2BQ9ULI0 1458 aa12.88□□□□□ -0.35
LIMS1-203ENST00000393310 BICRAQ9NZM4 1560 aa12.82□□□□□ -0.36
LIMS1-203ENST00000393310 ARID4BQ4LE39 1312 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-203ENST00000393310 LAMC3Q9Y6N6 1575 aa12.78□□□□□ -0.36
LIMS1-203ENST00000393310 ATP1B4Q9UN42 357 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-203ENST00000393310 HMGXB3Q12766 1538 aa12.75□□□□□ -0.37
LIMS1-203ENST00000393310 FANCD2Q9BXW9 1451 aa12.73□□□□□ -0.37
LIMS1-203ENST00000393310 FOXD1Q16676 465 aa12.72□□□□□ -0.37
LIMS1-203ENST00000393310 IFT140Q96RY7 1462 aa12.69□□□□□ -0.38
LIMS1-203ENST00000393310 CDK11AQ9UQ88 783 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-203ENST00000393310 APLP2Q06481 763 aa12.66□□□□□ -0.38
LIMS1-203ENST00000393310 FAM69CQ0P6D2 419 aa12.65□□□□□ -0.38
LIMS1-203ENST00000393310 RANGAP1P46060 587 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-203ENST00000393310 PLPPR3Q6T4P5 718 aa12.62□□□□□ -0.39
LIMS1-203ENST00000393310 CARMIL2Q6F5E8 1435 aa12.61□□□□□ -0.39
LIMS1-203ENST00000393310 SOGA1O94964 1423 aa12.59□□□□□ -0.39
LIMS1-203ENST00000393310 SMARCA4P51532 1647 aa12.55□□□□□ -0.4
LIMS1-203ENST00000393310 NESP48681 1621 aa12.54□□□□□ -0.4
LIMS1-203ENST00000393310 DMRT2Q9Y5R5 561 aa12.52□□□□□ -0.4
LIMS1-203ENST00000393310 PHF23Q9BUL5 403 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-203ENST00000393310 RSF1Q96T23 1441 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-203ENST00000393310 WRNQ14191 1432 aaPredicted RBP eCLIP12.46□□□□□ -0.41
LIMS1-203ENST00000393310 TDRD9Q8NDG6 1382 aaKnown RBP12.46□□□□□ -0.42
LIMS1-203ENST00000393310 UNC13AQ9UPW8 1703 aa12.46□□□□□ -0.42
LIMS1-203ENST00000393310 SCAF1Q9H7N4 1312 aaKnown RBP12.46□□□□□ -0.42
LIMS1-203ENST00000393310 KCNH8Q96L42 1107 aa12.45□□□□□ -0.42
LIMS1-203ENST00000393310 RTN4Q9NQC3 1192 aaKnown RBP12.44□□□□□ -0.42
LIMS1-203ENST00000393310 JPH4Q96JJ6 628 aa12.43□□□□□ -0.42
LIMS1-203ENST00000393310 UBTFP17480 764 aaKnown RBP12.42□□□□□ -0.42
LIMS1-203ENST00000393310 GRIN2BQ13224 1484 aa12.41□□□□□ -0.42
LIMS1-203ENST00000393310 SYNJ1O43426 1573 aa12.41□□□□□ -0.42
LIMS1-203ENST00000393310 MROH2BQ7Z745 1585 aa12.41□□□□□ -0.42
LIMS1-203ENST00000393310 PLEKHD1A6NEE1 506 aa12.4□□□□□ -0.42
LIMS1-203ENST00000393310 DAXXQ9UER7 740 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-203ENST00000393310 BCANQ96GW7 911 aa12.38□□□□□ -0.43
LIMS1-203ENST00000393310 POGZQ7Z3K3 1410 aa12.36□□□□□ -0.43
LIMS1-203ENST00000393310 DCAF8L1A6NGE4 600 aa12.36□□□□□ -0.43
LIMS1-203ENST00000393310 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
LIMS1-203ENST00000393310 CFTRP13569 1480 aa12.34□□□□□ -0.43
LIMS1-203ENST00000393310 PTPRGP23470 1445 aa12.33□□□□□ -0.44
LIMS1-203ENST00000393310 MAGI1Q96QZ7 1491 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-203ENST00000393310 KIF27Q86VH2 1401 aa12.29□□□□□ -0.44
LIMS1-203ENST00000393310 AQRO60306 1485 aaKnown RBP eCLIP12.27□□□□□ -0.45
LIMS1-203ENST00000393310 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.45
LIMS1-203ENST00000393310 TOP2AP11388 1531 aaKnown RBP12.27□□□□□ -0.45
LIMS1-203ENST00000393310 WDR62O43379 1518 aa12.26□□□□□ -0.45
LIMS1-203ENST00000393310 EIF5BO60841 1220 aaKnown RBP12.25□□□□□ -0.45
LIMS1-203ENST00000393310 TEX14Q8IWB6 1497 aa12.25□□□□□ -0.45
LIMS1-203ENST00000393310 MLECQ14165 292 aa12.22□□□□□ -0.45
LIMS1-203ENST00000393310 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
LIMS1-203ENST00000393310 PRKCSHP14314 528 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms