RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 CPS1P31327 1500 aa33.09■■■□□ 2.89
SMCO4-201ENST00000298966 TNRQ92752 1358 aa33.09■■■□□ 2.89
SMCO4-201ENST00000298966 TOM1O60784 492 aa33.08■■■□□ 2.89
SMCO4-201ENST00000298966 PIP4K2BP78356 416 aa33.07■■■□□ 2.88
SMCO4-201ENST00000298966 CEP162Q5TB80 1403 aa33.07■■■□□ 2.88
SMCO4-201ENST00000298966 HSPA1LP34931 641 aa33.06■■■□□ 2.88
SMCO4-201ENST00000298966 EHBP1L1Q8N3D4 1523 aa33.06■■■□□ 2.88
SMCO4-201ENST00000298966 NEURL4Q96JN8 1562 aa33.04■■■□□ 2.88
SMCO4-201ENST00000298966 KIF3BO15066 747 aa33.04■■■□□ 2.88
SMCO4-201ENST00000298966 FBXO31Q5XUX0 539 aaPredicted RBP33.04■■■□□ 2.88
SMCO4-201ENST00000298966 SHANK2Q9UPX8 1470 aa33.04■■■□□ 2.88
SMCO4-201ENST00000298966 FAM135AQ9P2D6 1515 aa33.02■■■□□ 2.88
SMCO4-201ENST00000298966 MED1Q15648 1581 aaPredicted RBP33.02■■■□□ 2.88
SMCO4-201ENST00000298966 PZPP20742 1482 aa33.02■■■□□ 2.88
SMCO4-201ENST00000298966 KDM5DQ9BY66 1539 aa33.02■■■□□ 2.88
SMCO4-201ENST00000298966 ANKLE2Q86XL3 938 aa32.99■■■□□ 2.87
SMCO4-201ENST00000298966 CCDC141Q6ZP82 1450 aa32.97■■■□□ 2.87
SMCO4-201ENST00000298966 WASHC2CQ9Y4E1 1318 aa32.97■■■□□ 2.87
SMCO4-201ENST00000298966 THEMISQ8N1K5 641 aaPredicted RBP32.96■■■□□ 2.87
SMCO4-201ENST00000298966 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.96■■■□□ 2.872e-7■■■■■ 27.5
SMCO4-201ENST00000298966 NLRP1Q9C000 1473 aa32.93■■■□□ 2.86
SMCO4-201ENST00000298966 RSPH4AQ5TD94 716 aa32.92■■■□□ 2.86
SMCO4-201ENST00000298966 MIA2Q96PC5 1412 aa32.92■■■□□ 2.86
SMCO4-201ENST00000298966 VWDEQ8N2E2 1590 aa32.92■■■□□ 2.86
SMCO4-201ENST00000298966 UGGT1Q9NYU2 1555 aa32.9■■■□□ 2.86
SMCO4-201ENST00000298966 CAMSAP2Q08AD1 1489 aa32.89■■■□□ 2.86
SMCO4-201ENST00000298966 NPHP4O75161 1426 aaPredicted RBP32.89■■■□□ 2.86
SMCO4-201ENST00000298966 DEPDC5O75140 1603 aa32.88■■■□□ 2.85
SMCO4-201ENST00000298966 MED14O60244 1454 aa32.87■■■□□ 2.85
SMCO4-201ENST00000298966 PHF23Q9BUL5 403 aaPredicted RBP32.84■■■□□ 2.85
SMCO4-201ENST00000298966 NCOA2Q15596 1464 aa32.83■■■□□ 2.85
SMCO4-201ENST00000298966 IQGAP1P46940 1657 aa32.82■■■□□ 2.84
SMCO4-201ENST00000298966 TSPY4P0CV99 314 aa32.8■■■□□ 2.84
SMCO4-201ENST00000298966 TSPY10P0CW01 314 aa32.8■■■□□ 2.84
SMCO4-201ENST00000298966 ARHGEF5Q12774 1597 aa32.79■■■□□ 2.84
SMCO4-201ENST00000298966 ALKQ9UM73 1620 aa32.78■■■□□ 2.84
SMCO4-201ENST00000298966 ZC3H13Q5T200 1668 aaKnown RBP32.73■■■□□ 2.83
SMCO4-201ENST00000298966 RNF17Q9BXT8 1623 aaKnown RBP32.73■■■□□ 2.83
SMCO4-201ENST00000298966 STRCP1A6NGW2 1772 aa32.72■■■□□ 2.83
SMCO4-201ENST00000298966 ABCC3O15438 1527 aa32.71■■■□□ 2.83
SMCO4-201ENST00000298966 LRRC7Q96NW7 1537 aa32.71■■■□□ 2.83
SMCO4-201ENST00000298966 SYNMO15061 1565 aa32.7■■■□□ 2.83
SMCO4-201ENST00000298966 SENP3Q9H4L4 574 aaPredicted RBP32.69■■■□□ 2.82
SMCO4-201ENST00000298966 ERVK-7P63135 1459 aa32.67■■■□□ 2.82
SMCO4-201ENST00000298966 VPS8Q8N3P4 1428 aa32.64■■■□□ 2.82
SMCO4-201ENST00000298966 EIF2AK4Q9P2K8 1649 aaKnown RBP32.64■■■□□ 2.82
SMCO4-201ENST00000298966 MAST1Q9Y2H9 1570 aa32.64■■■□□ 2.82
SMCO4-201ENST00000298966 CFAP65Q6ZU64 1925 aaKnown RBP32.63■■■□□ 2.81
SMCO4-201ENST00000298966 UBR1Q8IWV7 1749 aa32.6■■■□□ 2.81
SMCO4-201ENST00000298966 CEP152O94986 1710 aa32.58■■■□□ 2.81
SMCO4-201ENST00000298966 SCAF11Q99590 1463 aaKnown RBP32.58■■■□□ 2.81
SMCO4-201ENST00000298966 MROH1Q8NDA8 1641 aa32.56■■■□□ 2.8
SMCO4-201ENST00000298966 LRRC9Q6ZRR7 1453 aa32.52■■■□□ 2.8
SMCO4-201ENST00000298966 TXNDC2Q86VQ3 553 aa32.51■■■□□ 2.79
SMCO4-201ENST00000298966 ARHGAP23Q9P227 1491 aa32.49■■■□□ 2.79
SMCO4-201ENST00000298966 SLIT1O75093 1534 aa32.49■■■□□ 2.79
SMCO4-201ENST00000298966 DUOX2Q9NRD8 1548 aa32.48■■■□□ 2.79
SMCO4-201ENST00000298966 LTKP29376 864 aa32.48■■■□□ 2.79
SMCO4-201ENST00000298966 EID1Q9Y6B2 187 aa32.47■■■□□ 2.79
SMCO4-201ENST00000298966 XIRP1Q702N8 1843 aaKnown RBP32.46■■■□□ 2.79
SMCO4-201ENST00000298966 ARHGAP31Q2M1Z3 1444 aa32.43■■■□□ 2.78
SMCO4-201ENST00000298966 MYOM3Q5VTT5 1437 aa32.43■■■□□ 2.78
SMCO4-201ENST00000298966 RGS17Q9UGC6 210 aaPredicted RBP32.42■■■□□ 2.78
SMCO4-201ENST00000298966 PRDM15P57071 1507 aaPredicted RBP32.4■■■□□ 2.78
SMCO4-201ENST00000298966 FAM135BQ49AJ0 1406 aa32.37■■■□□ 2.77
SMCO4-201ENST00000298966 STAG3Q9UJ98 1225 aa32.37■■■□□ 2.77
SMCO4-201ENST00000298966 PIK3C2BO00750 1634 aa32.37■■■□□ 2.77
SMCO4-201ENST00000298966 KIF15Q9NS87 1388 aa32.36■■■□□ 2.77
SMCO4-201ENST00000298966 ERBINQ96RT1 1412 aa32.34■■■□□ 2.77
SMCO4-201ENST00000298966 TMEM2Q9UHN6 1383 aa32.34■■■□□ 2.77
SMCO4-201ENST00000298966 KANK4Q5T7N3 995 aaPredicted RBP32.34■■■□□ 2.77
SMCO4-201ENST00000298966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.33■■■□□ 2.77
SMCO4-201ENST00000298966 MAP3K1Q13233 1512 aa32.32■■■□□ 2.76
SMCO4-201ENST00000298966 TMEM94Q12767 1356 aa32.31■■■□□ 2.76
SMCO4-201ENST00000298966 KANK1Q14678 1352 aa32.31■■■□□ 2.76
SMCO4-201ENST00000298966 APLP2Q06481 763 aa32.29■■■□□ 2.76
SMCO4-201ENST00000298966 RRP7BPQ9NSQ0 103 aa32.29■■■□□ 2.76
SMCO4-201ENST00000298966 CROCC2H7BZ55 1655 aa32.29■■■□□ 2.76
SMCO4-201ENST00000298966 KDM5AP29375 1690 aaKnown RBP32.28■■■□□ 2.76
SMCO4-201ENST00000298966 EFCAB6Q5THR3 1501 aa32.28■■■□□ 2.76
SMCO4-201ENST00000298966 KCNA6P17658 529 aa32.27■■■□□ 2.76
SMCO4-201ENST00000298966 ABCC5O15440 1437 aa32.25■■■□□ 2.75
SMCO4-201ENST00000298966 ROBO1Q9Y6N7 1651 aa32.24■■■□□ 2.75
SMCO4-201ENST00000298966 PROSER2Q86WR7 435 aaPredicted RBP32.24■■■□□ 2.75
SMCO4-201ENST00000298966 POTEAQ6S8J7 498 aa32.23■■■□□ 2.75
SMCO4-201ENST00000298966 IDI1Q13907 227 aa32.22■■■□□ 2.75
SMCO4-201ENST00000298966 SLC26A8Q96RN1 970 aa32.21■■■□□ 2.75
SMCO4-201ENST00000298966 PTPN23Q9H3S7 1636 aa32.19■■■□□ 2.74
SMCO4-201ENST00000298966 TET3O43151 1660 aa32.18■■■□□ 2.74
SMCO4-201ENST00000298966 LMTK2Q8IWU2 1503 aa32.18■■■□□ 2.74
SMCO4-201ENST00000298966 DAPK1P53355 1430 aa32.17■■■□□ 2.74
SMCO4-201ENST00000298966 RBM33Q96EV2 1170 aaKnown RBP32.16■■■□□ 2.74
SMCO4-201ENST00000298966 NKTRP30414 1462 aaKnown RBP32.16■■■□□ 2.74
SMCO4-201ENST00000298966 NWD1Q149M9 1564 aa32.13■■■□□ 2.73
SMCO4-201ENST00000298966 ADGRB3O60242 1522 aa32.12■■■□□ 2.73
SMCO4-201ENST00000298966 MSH6P52701 1360 aa32.12■■■□□ 2.73
SMCO4-201ENST00000298966 BCANQ96GW7 911 aa32.12■■■□□ 2.73
SMCO4-201ENST00000298966 ANKRD30AQ9BXX3 1397 aa32.11■■■□□ 2.73
SMCO4-201ENST00000298966 NOS1P29475 1434 aa32.1■■■□□ 2.73
SMCO4-201ENST00000298966 PHLPP1O60346 1717 aa32.09■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms