RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 PKD2Q13563 968 aa22.08■■□□□ 1.13
TPM1-202ENST00000288398 KDM5DQ9BY66 1539 aa22.07■■□□□ 1.12
TPM1-202ENST00000288398 FAM135AQ9P2D6 1515 aa22.07■■□□□ 1.12
TPM1-202ENST00000288398 PLA2R1Q13018 1463 aa22.06■■□□□ 1.12
TPM1-202ENST00000288398 TNRQ92752 1358 aa22.04■■□□□ 1.12
TPM1-202ENST00000288398 KANK4Q5T7N3 995 aaPredicted RBP22.04■■□□□ 1.12
TPM1-202ENST00000288398 MYOM3Q5VTT5 1437 aa22.04■■□□□ 1.12
TPM1-202ENST00000288398 MIA2Q96PC5 1412 aa22.04■■□□□ 1.12
TPM1-202ENST00000288398 A2ML1A8K2U0 1454 aa22.03■■□□□ 1.12
TPM1-202ENST00000288398 PZPP20742 1482 aa22.02■■□□□ 1.12
TPM1-202ENST00000288398 FBXO31Q5XUX0 539 aaPredicted RBP22■■□□□ 1.11
TPM1-202ENST00000288398 IQSEC2Q5JU85 1478 aa21.99■■□□□ 1.11
TPM1-202ENST00000288398 MAST1Q9Y2H9 1570 aa21.99■■□□□ 1.11
TPM1-202ENST00000288398 LTBP4Q8N2S1 1624 aa21.98■■□□□ 1.11
TPM1-202ENST00000288398 TCOF1Q13428 1488 aaKnown RBP21.98■■□□□ 1.11
TPM1-202ENST00000288398 DNMT1P26358 1616 aaKnown RBP21.96■■□□□ 1.11
TPM1-202ENST00000288398 ZNF335Q9H4Z2 1342 aaPredicted RBP21.96■■□□□ 1.11
TPM1-202ENST00000288398 THEMISQ8N1K5 641 aaPredicted RBP21.94■■□□□ 1.1
TPM1-202ENST00000288398 NLRP1Q9C000 1473 aa21.93■■□□□ 1.1
TPM1-202ENST00000288398 EIF2AK4Q9P2K8 1649 aaKnown RBP21.93■■□□□ 1.1
TPM1-202ENST00000288398 RNF17Q9BXT8 1623 aaKnown RBP21.92■■□□□ 1.1
TPM1-202ENST00000288398 ZC3H13Q5T200 1668 aaKnown RBP21.91■■□□□ 1.1
TPM1-202ENST00000288398 ANKLE2Q86XL3 938 aa21.91■■□□□ 1.1
TPM1-202ENST00000288398 DUOX2Q9NRD8 1548 aa21.9■■□□□ 1.1
TPM1-202ENST00000288398 UBAP1LF5GYI3 381 aa21.89■■□□□ 1.09
TPM1-202ENST00000288398 ABCC3O15438 1527 aa21.89■■□□□ 1.09
TPM1-202ENST00000288398 KIF15Q9NS87 1388 aa21.88■■□□□ 1.09
TPM1-202ENST00000288398 UGGT1Q9NYU2 1555 aa21.88■■□□□ 1.09
TPM1-202ENST00000288398 PTPN23Q9H3S7 1636 aa21.88■■□□□ 1.09
TPM1-202ENST00000288398 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.87■■□□□ 1.091e-7■■□□□ 13.6
TPM1-202ENST00000288398 POLR1AO95602 1720 aaPredicted RBP21.87■■□□□ 1.09
TPM1-202ENST00000288398 SHANK2Q9UPX8 1470 aa21.87■■□□□ 1.09
TPM1-202ENST00000288398 RRP7BPQ9NSQ0 103 aa21.86■■□□□ 1.09
TPM1-202ENST00000288398 DISP3Q9P2K9 1392 aa21.85■■□□□ 1.09
TPM1-202ENST00000288398 ABCC5O15440 1437 aa21.83■■□□□ 1.09
TPM1-202ENST00000288398 FGD6Q6ZV73 1430 aa21.83■■□□□ 1.09
TPM1-202ENST00000288398 ERBINQ96RT1 1412 aa21.83■■□□□ 1.09
TPM1-202ENST00000288398 KANK1Q14678 1352 aa21.83■■□□□ 1.08
TPM1-202ENST00000288398 CROCC2H7BZ55 1655 aa21.82■■□□□ 1.08
TPM1-202ENST00000288398 DAPK1P53355 1430 aa21.82■■□□□ 1.08
TPM1-202ENST00000288398 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.82■■□□□ 1.089e-7■■■□□ 19
TPM1-202ENST00000288398 ERVK-7P63135 1459 aa21.82■■□□□ 1.08
TPM1-202ENST00000288398 SPATA31D1Q6ZQQ2 1576 aa21.82■■□□□ 1.08
TPM1-202ENST00000288398 NPHP4O75161 1426 aaPredicted RBP21.8■■□□□ 1.08
TPM1-202ENST00000288398 NEURL4Q96JN8 1562 aa21.8■■□□□ 1.08
TPM1-202ENST00000288398 ANKRD30AQ9BXX3 1397 aa21.8■■□□□ 1.08
TPM1-202ENST00000288398 CEP152O94986 1710 aa21.8■■□□□ 1.08
TPM1-202ENST00000288398 CPS1P31327 1500 aa21.8■■□□□ 1.08
TPM1-202ENST00000288398 MROH1Q8NDA8 1641 aa21.79■■□□□ 1.08
TPM1-202ENST00000288398 SCAF1Q9H7N4 1312 aaKnown RBP21.79■■□□□ 1.08
TPM1-202ENST00000288398 CHIC2Q9UKJ5 165 aa21.78■■□□□ 1.08
TPM1-202ENST00000288398 DEPDC5O75140 1603 aa21.77■■□□□ 1.07
TPM1-202ENST00000288398 PRDM15P57071 1507 aaPredicted RBP21.76■■□□□ 1.07
TPM1-202ENST00000288398 TOM1O60784 492 aa21.75■■□□□ 1.07
TPM1-202ENST00000288398 FAM50AQ14320 339 aaKnown RBP21.75■■□□□ 1.07
TPM1-202ENST00000288398 MED14O60244 1454 aa21.75■■□□□ 1.07
TPM1-202ENST00000288398 STAG3Q9UJ98 1225 aa21.74■■□□□ 1.07
TPM1-202ENST00000288398 IQGAP1P46940 1657 aa21.72■■□□□ 1.07
TPM1-202ENST00000288398 ARHGAP31Q2M1Z3 1444 aa21.72■■□□□ 1.07
TPM1-202ENST00000288398 PIP4K2BP78356 416 aa21.72■■□□□ 1.07
TPM1-202ENST00000288398 EID1Q9Y6B2 187 aa21.71■■□□□ 1.07
TPM1-202ENST00000288398 CFAP65Q6ZU64 1925 aaKnown RBP21.7■■□□□ 1.07
TPM1-202ENST00000288398 VWDEQ8N2E2 1590 aa21.69■■□□□ 1.06
TPM1-202ENST00000288398 SCAF11Q99590 1463 aaKnown RBP21.68■■□□□ 1.06
TPM1-202ENST00000288398 UBR1Q8IWV7 1749 aa21.68■■□□□ 1.06
TPM1-202ENST00000288398 TXNDC2Q86VQ3 553 aa21.67■■□□□ 1.06
TPM1-202ENST00000288398 LMTK2Q8IWU2 1503 aa21.63■■□□□ 1.05
TPM1-202ENST00000288398 ADGRL2O95490 1459 aa21.63■■□□□ 1.05
TPM1-202ENST00000288398 SLIT1O75093 1534 aa21.62■■□□□ 1.05
TPM1-202ENST00000288398 ARHGAP23Q9P227 1491 aa21.6■■□□□ 1.05
TPM1-202ENST00000288398 PIK3C2BO00750 1634 aa21.6■■□□□ 1.05
TPM1-202ENST00000288398 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
TPM1-202ENST00000288398 SYNMO15061 1565 aa21.6■■□□□ 1.05
TPM1-202ENST00000288398 LTKP29376 864 aa21.59■■□□□ 1.05
TPM1-202ENST00000288398 HSPA1LP34931 641 aa21.59■■□□□ 1.05
TPM1-202ENST00000288398 ILDR2Q71H61 639 aa21.59■■□□□ 1.05
TPM1-202ENST00000288398 EFCAB6Q5THR3 1501 aa21.59■■□□□ 1.05
TPM1-202ENST00000288398 TMEM2Q9UHN6 1383 aa21.59■■□□□ 1.05
TPM1-202ENST00000288398 IDI1Q13907 227 aa21.57■■□□□ 1.04
TPM1-202ENST00000288398 LRRC7Q96NW7 1537 aa21.56■■□□□ 1.04
TPM1-202ENST00000288398 BCANQ96GW7 911 aa21.55■■□□□ 1.04
TPM1-202ENST00000288398 SLC52A1Q9NWF4 448 aa21.55■■□□□ 1.04
TPM1-202ENST00000288398 SOCS7O14512 581 aa21.54■■□□□ 1.04
TPM1-202ENST00000288398 KDM5AP29375 1690 aaKnown RBP21.53■■□□□ 1.04
TPM1-202ENST00000288398 RPRD2Q5VT52 1461 aaKnown RBP21.52■■□□□ 1.04
TPM1-202ENST00000288398 NOS1P29475 1434 aa21.52■■□□□ 1.04
TPM1-202ENST00000288398 STRCP1A6NGW2 1772 aa21.51■■□□□ 1.03
TPM1-202ENST00000288398 ADGRB3O60242 1522 aa21.51■■□□□ 1.03
TPM1-202ENST00000288398 SENP3Q9H4L4 574 aaPredicted RBP21.51■■□□□ 1.03
TPM1-202ENST00000288398 PPP1R15AO75807 674 aaPredicted RBP21.49■■□□□ 1.03
TPM1-202ENST00000288398 HDGFP51858 240 aaKnown RBP21.49■■□□□ 1.03
TPM1-202ENST00000288398 ITGAEP38570 1179 aa21.48■■□□□ 1.03
TPM1-202ENST00000288398 TET3O43151 1660 aa21.47■■□□□ 1.03
TPM1-202ENST00000288398 ROCK1Q13464 1354 aa21.47■■□□□ 1.03
TPM1-202ENST00000288398 SLC26A8Q96RN1 970 aa21.46■■□□□ 1.03
TPM1-202ENST00000288398 PHF23Q9BUL5 403 aaPredicted RBP21.46■■□□□ 1.03
TPM1-202ENST00000288398 CHGAP10645 457 aaKnown RBP21.45■■□□□ 1.02
TPM1-202ENST00000288398 KCNA6P17658 529 aa21.44■■□□□ 1.02
TPM1-202ENST00000288398 MED1Q15648 1581 aaPredicted RBP21.44■■□□□ 1.02
TPM1-202ENST00000288398 PROSER2Q86WR7 435 aaPredicted RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms