RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 NISCHQ9Y2I1 1504 aa34.81■■■■□ 3.16
TPM1-202ENST00000288398 CCDC180Q9P1Z9 1646 aa31.22■■■□□ 2.59
TPM1-202ENST00000288398 ABCC9O60706 1549 aa31.19■■■□□ 2.58
TPM1-202ENST00000288398 RB1CC1Q8TDY2 1594 aa29.74■■■□□ 2.35
TPM1-202ENST00000288398 NACADO15069 1562 aa29.52■■■□□ 2.32
TPM1-202ENST00000288398 DCAF8L2P0C7V8 631 aa29.52■■■□□ 2.32
TPM1-202ENST00000288398 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
TPM1-202ENST00000288398 DNAJC5BQ9UF47 199 aa29.06■■■□□ 2.24
TPM1-202ENST00000288398 PABPN1Q86U42 306 aaKnown RBP eCLIP29.05■■■□□ 2.24
TPM1-202ENST00000288398 UNC13AQ9UPW8 1703 aa28.92■■■□□ 2.22
TPM1-202ENST00000288398 ZCCHC6Q5VYS8 1495 aaKnown RBP28.85■■■□□ 2.21
TPM1-202ENST00000288398 DCAF1Q9Y4B6 1507 aa28.74■■■□□ 2.19
TPM1-202ENST00000288398 BICRAQ9NZM4 1560 aa28.73■■■□□ 2.19
TPM1-202ENST00000288398 SHROOM4Q9ULL8 1493 aa28.48■■■□□ 2.15
TPM1-202ENST00000288398 SCRIBQ14160 1630 aa28.48■■■□□ 2.15
TPM1-202ENST00000288398 CC2D2AQ9P2K1 1620 aa28.14■■■□□ 2.09
TPM1-202ENST00000288398 EIF4G1Q04637 1599 aaKnown RBP28.11■■■□□ 2.09
TPM1-202ENST00000288398 CECR2Q9BXF3 1484 aa28.09■■■□□ 2.09
TPM1-202ENST00000288398 NCAPD3P42695 1498 aa27.22■■□□□ 1.95
TPM1-202ENST00000288398 ATAD2BQ9ULI0 1458 aa27.15■■□□□ 1.94
TPM1-202ENST00000288398 SMARCA2P51531 1590 aa27.14■■□□□ 1.94
TPM1-202ENST00000288398 SMARCA4P51532 1647 aa27.14■■□□□ 1.94
TPM1-202ENST00000288398 BAZ1AQ9NRL2 1556 aaPredicted RBP27.06■■□□□ 1.92
TPM1-202ENST00000288398 HMGXB3Q12766 1538 aa27.05■■□□□ 1.92
TPM1-202ENST00000288398 ERCC6Q03468 1493 aa27.01■■□□□ 1.91
TPM1-202ENST00000288398 BAZ1BQ9UIG0 1483 aaKnown RBP26.96■■□□□ 1.91
TPM1-202ENST00000288398 CUX2O14529 1486 aa26.87■■□□□ 1.89
TPM1-202ENST00000288398 PEG3Q9GZU2 1588 aa26.84■■□□□ 1.89
TPM1-202ENST00000288398 MROH2BQ7Z745 1585 aa26.8■■□□□ 1.88
TPM1-202ENST00000288398 NESP48681 1621 aa26.76■■□□□ 1.87
TPM1-202ENST00000288398 DNAJC5Q9H3Z4 198 aa26.74■■□□□ 1.87
TPM1-202ENST00000288398 LAMC3Q9Y6N6 1575 aa26.64■■□□□ 1.86
TPM1-202ENST00000288398 PDS5BQ9NTI5 1447 aa26.54■■□□□ 1.84
TPM1-202ENST00000288398 WIZO95785 1651 aa26.48■■□□□ 1.83
TPM1-202ENST00000288398 THOC2Q8NI27 1593 aaKnown RBP26.46■■□□□ 1.83
TPM1-202ENST00000288398 CADPSQ9ULU8 1353 aa26.44■■□□□ 1.82
TPM1-202ENST00000288398 KIF21AQ7Z4S6 1674 aa26.41■■□□□ 1.82
TPM1-202ENST00000288398 RSF1Q96T23 1441 aaPredicted RBP26.29■■□□□ 1.8
TPM1-202ENST00000288398 MRC2Q9UBG0 1479 aa26.27■■□□□ 1.8
TPM1-202ENST00000288398 TOP2AP11388 1531 aaKnown RBP26.2■■□□□ 1.79
TPM1-202ENST00000288398 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.78
TPM1-202ENST00000288398 WDR62O43379 1518 aa26.15■■□□□ 1.78
TPM1-202ENST00000288398 FANCD2Q9BXW9 1451 aa26.15■■□□□ 1.78
TPM1-202ENST00000288398 CFTRP13569 1480 aa26.11■■□□□ 1.77
TPM1-202ENST00000288398 CCDC88BA6NC98 1476 aa25.88■■□□□ 1.73
TPM1-202ENST00000288398 URB2Q14146 1524 aaKnown RBP25.87■■□□□ 1.73
TPM1-202ENST00000288398 PRDM2Q13029 1718 aa25.85■■□□□ 1.73
TPM1-202ENST00000288398 TRIM41Q8WV44 630 aa25.71■■□□□ 1.71
TPM1-202ENST00000288398 OSCARQ8IYS5 282 aa25.7■■□□□ 1.7
TPM1-202ENST00000288398 IFT140Q96RY7 1462 aa25.66■■□□□ 1.7
TPM1-202ENST00000288398 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
TPM1-202ENST00000288398 TOPBP1Q92547 1522 aa25.63■■□□□ 1.69
TPM1-202ENST00000288398 DNMBPQ6XZF7 1577 aa25.56■■□□□ 1.68
TPM1-202ENST00000288398 ZNF608Q9ULD9 1512 aaPredicted RBP25.54■■□□□ 1.68
TPM1-202ENST00000288398 EIF4G3O43432 1585 aaKnown RBP25.44■■□□□ 1.66
TPM1-202ENST00000288398 POLA1P09884 1462 aaPredicted RBP25.37■■□□□ 1.65
TPM1-202ENST00000288398 AQRO60306 1485 aaKnown RBP eCLIP25.35■■□□□ 1.652e-12■■■■□ 23
TPM1-202ENST00000288398 TARBP1Q13395 1621 aaKnown RBP25.35■■□□□ 1.65
TPM1-202ENST00000288398 SOGA1O94964 1423 aa25.3■■□□□ 1.64
TPM1-202ENST00000288398 SUPT5HO00267 1087 aaKnown RBP25.3■■□□□ 1.64
TPM1-202ENST00000288398 FBLN2P98095 1184 aa25.3■■□□□ 1.64
TPM1-202ENST00000288398 RIMBP3CA6NJZ7 1639 aa25.27■■□□□ 1.64
TPM1-202ENST00000288398 RIMBP3BA6NNM3 1639 aa25.27■■□□□ 1.64
TPM1-202ENST00000288398 RIMBP3Q9UFD9 1639 aa25.27■■□□□ 1.64
TPM1-202ENST00000288398 RAD54L2Q9Y4B4 1467 aa25.27■■□□□ 1.64
TPM1-202ENST00000288398 FGD5Q6ZNL6 1462 aa25.24■■□□□ 1.63
TPM1-202ENST00000288398 TDRD9Q8NDG6 1382 aaKnown RBP25.22■■□□□ 1.63
TPM1-202ENST00000288398 ARHGEF11O15085 1522 aa25.22■■□□□ 1.63
TPM1-202ENST00000288398 CHD1O14646 1710 aa25.21■■□□□ 1.63
TPM1-202ENST00000288398 CUX1P39880 1505 aa25.18■■□□□ 1.62
TPM1-202ENST00000288398 WDR97A6NE52 1622 aa25.18■■□□□ 1.62
TPM1-202ENST00000288398 SNAPC4Q5SXM2 1469 aa25.12■■□□□ 1.61
TPM1-202ENST00000288398 CHMP7Q8WUX9 453 aaPredicted RBP25.1■■□□□ 1.61
TPM1-202ENST00000288398 CYB5RLQ6IPT4 315 aa25.08■■□□□ 1.61
TPM1-202ENST00000288398 GRIN2BQ13224 1484 aa25.08■■□□□ 1.6
TPM1-202ENST00000288398 MAGI1Q96QZ7 1491 aaPredicted RBP25.07■■□□□ 1.6
TPM1-202ENST00000288398 SYNJ1O43426 1573 aa25■■□□□ 1.59
TPM1-202ENST00000288398 GAPVD1Q14C86 1478 aa24.99■■□□□ 1.59
TPM1-202ENST00000288398 SYNJ2O15056 1496 aa24.98■■□□□ 1.59
TPM1-202ENST00000288398 ABCA10Q8WWZ4 1543 aa24.95■■□□□ 1.58
TPM1-202ENST00000288398 ARAP1Q96P48 1450 aa24.95■■□□□ 1.58
TPM1-202ENST00000288398 PBRM1Q86U86 1689 aa24.94■■□□□ 1.58
TPM1-202ENST00000288398 WRNQ14191 1432 aaPredicted RBP eCLIP24.92■■□□□ 1.58
TPM1-202ENST00000288398 CLASP1Q7Z460 1538 aa24.91■■□□□ 1.58
TPM1-202ENST00000288398 ABCA5Q8WWZ7 1642 aa24.87■■□□□ 1.57
TPM1-202ENST00000288398 TRHP20396 242 aaPredicted RBP24.86■■□□□ 1.57
TPM1-202ENST00000288398 TOP2BQ02880 1626 aa24.83■■□□□ 1.56
TPM1-202ENST00000288398 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
TPM1-202ENST00000288398 GRIN2AQ12879 1464 aa24.73■■□□□ 1.55
TPM1-202ENST00000288398 ADAMTS12P58397 1594 aa24.71■■□□□ 1.55
TPM1-202ENST00000288398 FHAD1B1AJZ9 1412 aa24.69■■□□□ 1.54
TPM1-202ENST00000288398 ERICH3Q5RHP9 1530 aa24.66■■□□□ 1.54
TPM1-202ENST00000288398 NUP160Q12769 1436 aa24.61■■□□□ 1.53
TPM1-202ENST00000288398 CEP170Q5SW79 1584 aa24.59■■□□□ 1.53
TPM1-202ENST00000288398 ERCC6L2Q5T890 1561 aa24.5■■□□□ 1.51
TPM1-202ENST00000288398 SHROOM2Q13796 1616 aa24.46■■□□□ 1.51
TPM1-202ENST00000288398 KIF27Q86VH2 1401 aa24.43■■□□□ 1.5
TPM1-202ENST00000288398 PRG4Q92954 1404 aaPredicted RBP24.43■■□□□ 1.5
TPM1-202ENST00000288398 JPH4Q96JJ6 628 aa24.42■■□□□ 1.5
TPM1-202ENST00000288398 RUSC2Q8N2Y8 1516 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms