RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 APLP2Q06481 763 aa34.8■■■■□ 3.16
VTI1B-201ENST00000216456 CEP170BQ9Y4F5 1589 aaPredicted RBP34.79■■■■□ 3.16
VTI1B-201ENST00000216456 MAST1Q9Y2H9 1570 aa34.79■■■■□ 3.16
VTI1B-201ENST00000216456 WASHC2CQ9Y4E1 1318 aa34.78■■■■□ 3.16
VTI1B-201ENST00000216456 KDM5DQ9BY66 1539 aa34.77■■■■□ 3.16
VTI1B-201ENST00000216456 ZNF142P52746 1687 aaPredicted RBP34.76■■■■□ 3.16
VTI1B-201ENST00000216456 PZPP20742 1482 aa34.71■■■■□ 3.15
VTI1B-201ENST00000216456 TNRQ92752 1358 aa34.7■■■■□ 3.15
VTI1B-201ENST00000216456 ABCC5O15440 1437 aa34.7■■■■□ 3.15
VTI1B-201ENST00000216456 PTPN23Q9H3S7 1636 aa34.7■■■■□ 3.14
VTI1B-201ENST00000216456 A2ML1A8K2U0 1454 aa34.68■■■■□ 3.14
VTI1B-201ENST00000216456 LTBP4Q8N2S1 1624 aa34.67■■■■□ 3.14
VTI1B-201ENST00000216456 DNMT1P26358 1616 aaKnown RBP34.66■■■■□ 3.14
VTI1B-201ENST00000216456 RNF17Q9BXT8 1623 aaKnown RBP34.66■■■■□ 3.14
VTI1B-201ENST00000216456 PLA2R1Q13018 1463 aa34.65■■■■□ 3.14
VTI1B-201ENST00000216456 TCOF1Q13428 1488 aaKnown RBP34.65■■■■□ 3.14
VTI1B-201ENST00000216456 FGD6Q6ZV73 1430 aa34.64■■■■□ 3.14
VTI1B-201ENST00000216456 RRP7BPQ9NSQ0 103 aa34.64■■■■□ 3.14
VTI1B-201ENST00000216456 MROH1Q8NDA8 1641 aa34.63■■■■□ 3.13
VTI1B-201ENST00000216456 ABCC3O15438 1527 aa34.63■■■■□ 3.13
VTI1B-201ENST00000216456 FAM135AQ9P2D6 1515 aa34.63■■■■□ 3.13
VTI1B-201ENST00000216456 ZNF335Q9H4Z2 1342 aaPredicted RBP34.61■■■■□ 3.13
VTI1B-201ENST00000216456 KIF15Q9NS87 1388 aa34.61■■■■□ 3.13
VTI1B-201ENST00000216456 DAPK1P53355 1430 aa34.6■■■■□ 3.13
VTI1B-201ENST00000216456 CROCC2H7BZ55 1655 aa34.6■■■■□ 3.13
VTI1B-201ENST00000216456 PKD2Q13563 968 aa34.59■■■■□ 3.13
VTI1B-201ENST00000216456 DUOX2Q9NRD8 1548 aa34.59■■■■□ 3.13
VTI1B-201ENST00000216456 CHIC2Q9UKJ5 165 aa34.58■■■■□ 3.13
VTI1B-201ENST00000216456 EIF2AK4Q9P2K8 1649 aaKnown RBP34.58■■■■□ 3.13
VTI1B-201ENST00000216456 SHANK2Q9UPX8 1470 aa34.56■■■■□ 3.12
VTI1B-201ENST00000216456 CEP152O94986 1710 aa34.53■■■■□ 3.12
VTI1B-201ENST00000216456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.52■■■■□ 3.12
VTI1B-201ENST00000216456 ZC3H13Q5T200 1668 aaKnown RBP34.49■■■■□ 3.11
VTI1B-201ENST00000216456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.48■■■■□ 3.111e-8■■□□□ 14.2
VTI1B-201ENST00000216456 NEURL4Q96JN8 1562 aa34.48■■■■□ 3.11
VTI1B-201ENST00000216456 ERVK-7P63135 1459 aa34.47■■■■□ 3.11
VTI1B-201ENST00000216456 NLRP1Q9C000 1473 aa34.46■■■■□ 3.11
VTI1B-201ENST00000216456 SPATA31D1Q6ZQQ2 1576 aa34.46■■■■□ 3.11
VTI1B-201ENST00000216456 ERBINQ96RT1 1412 aa34.46■■■■□ 3.11
VTI1B-201ENST00000216456 UGGT1Q9NYU2 1555 aa34.45■■■■□ 3.1
VTI1B-201ENST00000216456 FAM50AQ14320 339 aaKnown RBP34.44■■■■□ 3.1
VTI1B-201ENST00000216456 CFAP65Q6ZU64 1925 aaKnown RBP34.42■■■■□ 3.1
VTI1B-201ENST00000216456 PRDM15P57071 1507 aaPredicted RBP34.42■■■■□ 3.1
VTI1B-201ENST00000216456 THEMISQ8N1K5 641 aaPredicted RBP34.41■■■■□ 3.1
VTI1B-201ENST00000216456 POLR1AO95602 1720 aaPredicted RBP34.41■■■■□ 3.1
VTI1B-201ENST00000216456 ANKRD30AQ9BXX3 1397 aa34.39■■■■□ 3.1
VTI1B-201ENST00000216456 ANKLE2Q86XL3 938 aa34.38■■■■□ 3.09
VTI1B-201ENST00000216456 PPARGC1BQ86YN6 1023 aaKnown RBP34.35■■■■□ 3.09
VTI1B-201ENST00000216456 IQSEC2Q5JU85 1478 aa34.34■■■■□ 3.09
VTI1B-201ENST00000216456 DEPDC5O75140 1603 aa34.34■■■■□ 3.09
VTI1B-201ENST00000216456 NPHP4O75161 1426 aaPredicted RBP34.3■■■■□ 3.08
VTI1B-201ENST00000216456 ARHGAP31Q2M1Z3 1444 aa34.3■■■■□ 3.08
VTI1B-201ENST00000216456 ADGRL2O95490 1459 aa34.28■■■■□ 3.08
VTI1B-201ENST00000216456 UBAP1LF5GYI3 381 aa34.27■■■■□ 3.08
VTI1B-201ENST00000216456 MED14O60244 1454 aa34.26■■■■□ 3.07
VTI1B-201ENST00000216456 KANK1Q14678 1352 aa34.25■■■■□ 3.07
VTI1B-201ENST00000216456 UBR1Q8IWV7 1749 aa34.25■■■■□ 3.07
VTI1B-201ENST00000216456 VWDEQ8N2E2 1590 aa34.24■■■■□ 3.07
VTI1B-201ENST00000216456 IQGAP1P46940 1657 aa34.2■■■■□ 3.07
VTI1B-201ENST00000216456 LTKP29376 864 aa34.2■■■■□ 3.07
VTI1B-201ENST00000216456 LMTK2Q8IWU2 1503 aa34.2■■■■□ 3.06
VTI1B-201ENST00000216456 ANKRD50Q9ULJ7 1429 aa34.18■■■■□ 3.06
VTI1B-201ENST00000216456 PIK3C2BO00750 1634 aa34.17■■■■□ 3.06
VTI1B-201ENST00000216456 IDI1Q13907 227 aa34.14■■■■□ 3.06
VTI1B-201ENST00000216456 CPS1P31327 1500 aa34.14■■■■□ 3.06
VTI1B-201ENST00000216456 TXNDC2Q86VQ3 553 aa34.13■■■■□ 3.05
VTI1B-201ENST00000216456 SYNMO15061 1565 aa34.13■■■■□ 3.05
VTI1B-201ENST00000216456 SCAF11Q99590 1463 aaKnown RBP34.13■■■■□ 3.05
VTI1B-201ENST00000216456 ARHGAP23Q9P227 1491 aa34.13■■■■□ 3.05
VTI1B-201ENST00000216456 ITGAEP38570 1179 aa34.12■■■■□ 3.05
VTI1B-201ENST00000216456 EFCAB6Q5THR3 1501 aa34.12■■■■□ 3.05
VTI1B-201ENST00000216456 STRCP1A6NGW2 1772 aa34.11■■■■□ 3.05
VTI1B-201ENST00000216456 SLIT1O75093 1534 aa34.1■■■■□ 3.05
VTI1B-201ENST00000216456 NOS1P29475 1434 aa34.08■■■■□ 3.05
VTI1B-201ENST00000216456 PIP4K2BP78356 416 aa34.07■■■■□ 3.04
VTI1B-201ENST00000216456 STAG3Q9UJ98 1225 aa34.07■■■■□ 3.04
VTI1B-201ENST00000216456 DISP3Q9P2K9 1392 aa34.06■■■■□ 3.04
VTI1B-201ENST00000216456 SCAF1Q9H7N4 1312 aaKnown RBP34.05■■■■□ 3.04
VTI1B-201ENST00000216456 TMEM2Q9UHN6 1383 aa34.05■■■■□ 3.04
VTI1B-201ENST00000216456 LRRC7Q96NW7 1537 aa34■■■■□ 3.03
VTI1B-201ENST00000216456 EID1Q9Y6B2 187 aa34■■■■□ 3.03
VTI1B-201ENST00000216456 SENP3Q9H4L4 574 aaPredicted RBP33.99■■■■□ 3.03
VTI1B-201ENST00000216456 ALKQ9UM73 1620 aa33.99■■■■□ 3.03
VTI1B-201ENST00000216456 ROCK1Q13464 1354 aa33.98■■■■□ 3.03
VTI1B-201ENST00000216456 UNC13BO14795 1591 aa33.97■■■■□ 3.03
VTI1B-201ENST00000216456 TOM1O60784 492 aa33.96■■■■□ 3.03
VTI1B-201ENST00000216456 ILDR2Q71H61 639 aa33.96■■■■□ 3.03
VTI1B-201ENST00000216456 HSPA1LP34931 641 aa33.95■■■■□ 3.03
VTI1B-201ENST00000216456 TET3O43151 1660 aa33.95■■■■□ 3.03
VTI1B-201ENST00000216456 ADGRB3O60242 1522 aa33.94■■■■□ 3.02
VTI1B-201ENST00000216456 RPRD2Q5VT52 1461 aaKnown RBP33.91■■■■□ 3.02
VTI1B-201ENST00000216456 SLC26A8Q96RN1 970 aa33.91■■■■□ 3.02
VTI1B-201ENST00000216456 SLC52A1Q9NWF4 448 aa33.91■■■■□ 3.02
VTI1B-201ENST00000216456 KDM5AP29375 1690 aaKnown RBP33.9■■■■□ 3.02
VTI1B-201ENST00000216456 E9PCH4 1651 aa33.87■■■■□ 3.01
VTI1B-201ENST00000216456 GCC2Q8IWJ2 1684 aa33.87■■■■□ 3.01
VTI1B-201ENST00000216456 NUP155O75694 1391 aa33.85■■■■□ 3.01
VTI1B-201ENST00000216456 MYO5BQ9ULV0 1848 aa33.84■■■■□ 3.01
VTI1B-201ENST00000216456 IQGAP3Q86VI3 1631 aa33.82■■■■□ 3.01
VTI1B-201ENST00000216456 RBM33Q96EV2 1170 aaKnown RBP33.82■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms