RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 CntlnA2AM05 1397 aa14.7□□□□□ -0.06
Trim56-201ENSMUST00000054384 Glipr1l2Q9CQ35 332 aa14.7□□□□□ -0.06
Trim56-201ENSMUST00000054384 Cgnl1Q6AW69 1298 aa14.7□□□□□ -0.06
Trim56-201ENSMUST00000054384 Fbxo2Q80UW2 297 aa14.7□□□□□ -0.06
Trim56-201ENSMUST00000054384 Dcaf11Q91VU6 549 aa14.7□□□□□ -0.06
Trim56-201ENSMUST00000054384 Taf3Q5HZG4 932 aa14.69□□□□□ -0.06
Trim56-201ENSMUST00000054384 Gabpb2P81069 414 aa14.69□□□□□ -0.06
Trim56-201ENSMUST00000054384 Psme1P97371 249 aa14.69□□□□□ -0.06
Trim56-201ENSMUST00000054384 Gtf3c3Q3TMP1 882 aa14.68□□□□□ -0.06
Trim56-201ENSMUST00000054384 Nap1l3Q794H2 544 aa14.68□□□□□ -0.06
Trim56-201ENSMUST00000054384 CrbnQ8C7D2 445 aa14.68□□□□□ -0.06
Trim56-201ENSMUST00000054384 Dusp9Q7TNL7 452 aa14.68□□□□□ -0.06
Trim56-201ENSMUST00000054384 Sox12Q04890 314 aa14.67□□□□□ -0.06
Trim56-201ENSMUST00000054384 Tomm22Q9CPQ3 142 aa14.67□□□□□ -0.06
Trim56-201ENSMUST00000054384 Ppp1r18Q8BQ30 594 aa14.66□□□□□ -0.06
Trim56-201ENSMUST00000054384 Krt82Q99M74 516 aa14.66□□□□□ -0.06
Trim56-201ENSMUST00000054384 A0A1L1SQF0 893 aa14.66□□□□□ -0.06
Trim56-201ENSMUST00000054384 Drc7Q6V3W6 876 aa14.66□□□□□ -0.06
Trim56-201ENSMUST00000054384 Senp3Q9EP97 568 aaKnown RBP14.66□□□□□ -0.06
Trim56-201ENSMUST00000054384 Ipo7Q9EPL8 1038 aaKnown RBP14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Odf2A3KGV1 830 aaKnown RBP14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Srek1Q8BZX4 494 aaKnown RBP14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Utp3Q9JI13 469 aaKnown RBP14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Fam193aQ8CGI1 1231 aaKnown RBP14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Slc4a10Q5DTL9 1118 aa14.65□□□□□ -0.06
Trim56-201ENSMUST00000054384 Pibf1E9Q6K3 756 aa14.64□□□□□ -0.07
Trim56-201ENSMUST00000054384 Plekhh2Q8C115 1491 aa14.64□□□□□ -0.07
Trim56-201ENSMUST00000054384 ChgaP26339 463 aaKnown RBP14.64□□□□□ -0.07
Trim56-201ENSMUST00000054384 Sh3bgrQ9WUZ7 214 aa14.64□□□□□ -0.07
Trim56-201ENSMUST00000054384 Trak1Q6PD31 939 aa14.63□□□□□ -0.07
Trim56-201ENSMUST00000054384 Ccdc146E9Q9F7 977 aa14.62□□□□□ -0.07
Trim56-201ENSMUST00000054384 Znhit6Q3UFB2 460 aaKnown RBP14.62□□□□□ -0.07
Trim56-201ENSMUST00000054384 Evc2Q8K1G2 1220 aa14.62□□□□□ -0.07
Trim56-201ENSMUST00000054384 Casq1O09165 405 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Mre11Q61216 706 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Hook1Q8BIL5 728 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Baz1bQ9Z277 1479 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Rufy1Q8BIJ7 712 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Ccdc43Q9CR29 222 aaKnown RBP14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Ddx11Q6AXC6 880 aa14.61□□□□□ -0.07
Trim56-201ENSMUST00000054384 Txndc2Q6P902 515 aa14.6□□□□□ -0.07
Trim56-201ENSMUST00000054384 AknaQ80VW7 1404 aa14.6□□□□□ -0.07
Trim56-201ENSMUST00000054384 Rpap1Q80TE0 1409 aa14.59□□□□□ -0.07
Trim56-201ENSMUST00000054384 Gcom1E9PZ54 550 aa14.59□□□□□ -0.07
Trim56-201ENSMUST00000054384 MyzapQ3UIJ9 466 aa14.59□□□□□ -0.07
Trim56-201ENSMUST00000054384 Mphosph9A6H5Y1 991 aa14.59□□□□□ -0.07
Trim56-201ENSMUST00000054384 Podxl2Q8CAE9 603 aa14.59□□□□□ -0.07
Trim56-201ENSMUST00000054384 AppP12023 770 aa14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 Ralbp1Q62172 648 aa14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 KinQ8K339 391 aa14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 Sin3aQ60520 1274 aaKnown RBP14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 CenpjQ569L8 1344 aa14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 Srcin1Q9QWI6 1250 aa14.57□□□□□ -0.08
Trim56-201ENSMUST00000054384 Rec8Q8C5S7 591 aa14.56□□□□□ -0.08
Trim56-201ENSMUST00000054384 Anp32eP97822 260 aaKnown RBP14.56□□□□□ -0.08
Trim56-201ENSMUST00000054384 Gripap1Q8VD04 806 aa14.56□□□□□ -0.08
Trim56-201ENSMUST00000054384 Kif4P33174 1231 aa14.56□□□□□ -0.08
Trim56-201ENSMUST00000054384 Hmgn5Q9JL35 406 aa14.56□□□□□ -0.08
Trim56-201ENSMUST00000054384 Cplx2P84086 134 aa14.55□□□□□ -0.08
Trim56-201ENSMUST00000054384 Nup155Q99P88 1391 aaKnown RBP14.55□□□□□ -0.08
Trim56-201ENSMUST00000054384 Chaf1aQ9QWF0 911 aa14.55□□□□□ -0.08
Trim56-201ENSMUST00000054384 Fmn1Q05860 1466 aa14.55□□□□□ -0.08
Trim56-201ENSMUST00000054384 Paf1Q8K2T8 535 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Cplx1P63040 134 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Stard8Q8K031 1019 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Ap3b2Q9JME5 1082 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Tceal9Q9DD24 104 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Pnmal2G3X9N3 661 aa14.54□□□□□ -0.08
Trim56-201ENSMUST00000054384 Hap1O35668 628 aa14.53□□□□□ -0.08
Trim56-201ENSMUST00000054384 Bicd2Q921C5 820 aa14.53□□□□□ -0.08
Trim56-201ENSMUST00000054384 Dixdc1Q80Y83 711 aa14.53□□□□□ -0.08
Trim56-201ENSMUST00000054384 Gpatch3Q8BIY1 525 aa14.53□□□□□ -0.08
Trim56-201ENSMUST00000054384 Cep162Q6ZQ06 1403 aa14.52□□□□□ -0.08
Trim56-201ENSMUST00000054384 Lemd3Q9WU40 921 aa14.52□□□□□ -0.08
Trim56-201ENSMUST00000054384 HmmrQ00547 794 aaKnown RBP14.52□□□□□ -0.08
Trim56-201ENSMUST00000054384 Ncbp3Q8BZR9 615 aaKnown RBP14.52□□□□□ -0.09
Trim56-201ENSMUST00000054384 Smc4Q8CG47 1286 aa14.52□□□□□ -0.09
Trim56-201ENSMUST00000054384 Pak3Q61036 559 aa14.52□□□□□ -0.09
Trim56-201ENSMUST00000054384 Tsen2Q6P7W5 460 aa14.52□□□□□ -0.09
Trim56-201ENSMUST00000054384 Stk31Q99MW1 1018 aa14.52□□□□□ -0.09
Trim56-201ENSMUST00000054384 Kif7B7ZNG0 1348 aa14.51□□□□□ -0.09
Trim56-201ENSMUST00000054384 Polr3gQ6NXY9 223 aa14.51□□□□□ -0.09
Trim56-201ENSMUST00000054384 Samd1D3YXK1 519 aa14.51□□□□□ -0.09
Trim56-201ENSMUST00000054384 Rnf20Q5DTM8 973 aa14.51□□□□□ -0.09
Trim56-201ENSMUST00000054384 Cwc15Q9JHS9 229 aaKnown RBP14.51□□□□□ -0.09
Trim56-201ENSMUST00000054384 Smg6P61406 1418 aaKnown RBP14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Ccdc60Q8C4J0 545 aa14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Rab11fip3Q8CHD8 1047 aa14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Rfx1P48377 963 aa14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Eif2s2Q99L45 331 aaKnown RBP14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Rock1P70335 1354 aa14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Dhx57Q6P5D3 1388 aaKnown RBP14.5□□□□□ -0.09
Trim56-201ENSMUST00000054384 Dctn1O08788 1281 aa14.49□□□□□ -0.09
Trim56-201ENSMUST00000054384 A0A0U1RNP2 1173 aa14.49□□□□□ -0.09
Trim56-201ENSMUST00000054384 PhaxQ9JJT9 385 aaKnown RBP14.49□□□□□ -0.09
Trim56-201ENSMUST00000054384 Ipo4Q8VI75 1082 aa14.48□□□□□ -0.09
Trim56-201ENSMUST00000054384 Pknox2Q8BG99 474 aa14.48□□□□□ -0.09
Trim56-201ENSMUST00000054384 Kif3aP28741 701 aa14.48□□□□□ -0.09
Trim56-201ENSMUST00000054384 Ccp110Q7TSH4 1004 aa14.48□□□□□ -0.09
Trim56-201ENSMUST00000054384 Aebp1Q640N1 1128 aa14.48□□□□□ -0.09
Retrieved 100 of 22,080 RNA–protein pairs in 45.7 ms