Protein–RNA interactions for Protein: Q5DTM8

Rnf20, E3 ubiquitin-protein ligase BRE1A, mousemouse

Predictions only

Length 973 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf20Q5DTM8 Gm25239-201ENSMUST00000174915 86 ntBASIC43.52■■■■■ 4.56
Rnf20Q5DTM8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
Rnf20Q5DTM8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.9■■■■□ 3.98
Rnf20Q5DTM8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.75■■■■□ 3.95
Rnf20Q5DTM8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
Rnf20Q5DTM8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.49■■■■□ 3.91
Rnf20Q5DTM8 Gm15042-201ENSMUST00000120212 883 ntBASIC38.71■■■■□ 3.79
Rnf20Q5DTM8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
Rnf20Q5DTM8 Gm15045-201ENSMUST00000117359 883 ntBASIC37.94■■■■□ 3.66
Rnf20Q5DTM8 Psd-208ENSMUST00000224556 2034 ntBASIC37.94■■■■□ 3.66
Rnf20Q5DTM8 Gm24109-201ENSMUST00000175489 103 ntBASIC37.39■■■■□ 3.58
Rnf20Q5DTM8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.34■■■■□ 3.57
Rnf20Q5DTM8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37.3■■■■□ 3.56
Rnf20Q5DTM8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.27■■■■□ 3.56
Rnf20Q5DTM8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
Rnf20Q5DTM8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.69■■■■□ 3.46
Rnf20Q5DTM8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
Rnf20Q5DTM8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC36.55■■■■□ 3.44
Rnf20Q5DTM8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.55■■■■□ 3.44
Rnf20Q5DTM8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
Rnf20Q5DTM8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
Rnf20Q5DTM8 Gm23366-201ENSMUST00000175022 89 ntBASIC36.47■■■■□ 3.43
Rnf20Q5DTM8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.42■■■■□ 3.42
Rnf20Q5DTM8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
Rnf20Q5DTM8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
Rnf20Q5DTM8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.33■■■■□ 3.41
Rnf20Q5DTM8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.29■■■■□ 3.4
Rnf20Q5DTM8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
Rnf20Q5DTM8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
Rnf20Q5DTM8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
Rnf20Q5DTM8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Rnf20Q5DTM8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.93■■■■□ 3.34
Rnf20Q5DTM8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
Rnf20Q5DTM8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.86■■■■□ 3.33
Rnf20Q5DTM8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Rnf20Q5DTM8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.61■■■■□ 3.29
Rnf20Q5DTM8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.29
Rnf20Q5DTM8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.53■■■■□ 3.28
Rnf20Q5DTM8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
Rnf20Q5DTM8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.31■■■■□ 3.24
Rnf20Q5DTM8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Rnf20Q5DTM8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35.2■■■■□ 3.23
Rnf20Q5DTM8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.95■■■■□ 3.19
Rnf20Q5DTM8 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.95■■■■□ 3.18
Rnf20Q5DTM8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Rnf20Q5DTM8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Rnf20Q5DTM8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
Rnf20Q5DTM8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Rnf20Q5DTM8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
Rnf20Q5DTM8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
Rnf20Q5DTM8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.52■■■■□ 3.12
Rnf20Q5DTM8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
Rnf20Q5DTM8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Rnf20Q5DTM8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
Rnf20Q5DTM8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
Rnf20Q5DTM8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34.26■■■■□ 3.07
Rnf20Q5DTM8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Rnf20Q5DTM8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
Rnf20Q5DTM8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Rnf20Q5DTM8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.22■■■■□ 3.07
Rnf20Q5DTM8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.15■■■■□ 3.06
Rnf20Q5DTM8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.12■■■■□ 3.05
Rnf20Q5DTM8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.12■■■■□ 3.05
Rnf20Q5DTM8 Gm25238-201ENSMUST00000174914 89 ntBASIC34.11■■■■□ 3.05
Rnf20Q5DTM8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC34.1■■■■□ 3.05
Rnf20Q5DTM8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.08■■■■□ 3.05
Rnf20Q5DTM8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.04
Rnf20Q5DTM8 Gm27325-201ENSMUST00000175467 74 ntBASIC34.05■■■■□ 3.04
Rnf20Q5DTM8 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.02■■■■□ 3.04
Rnf20Q5DTM8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.01■■■■□ 3.04
Rnf20Q5DTM8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
Rnf20Q5DTM8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.79■■■■□ 3
Rnf20Q5DTM8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.78■■■■□ 3
Rnf20Q5DTM8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Rnf20Q5DTM8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Rnf20Q5DTM8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Rnf20Q5DTM8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
Rnf20Q5DTM8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.56■■■□□ 2.96
Rnf20Q5DTM8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
Rnf20Q5DTM8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
Rnf20Q5DTM8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Rnf20Q5DTM8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Rnf20Q5DTM8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC33.46■■■□□ 2.95
Rnf20Q5DTM8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC33.44■■■□□ 2.94
Rnf20Q5DTM8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Rnf20Q5DTM8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Rnf20Q5DTM8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Rnf20Q5DTM8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Rnf20Q5DTM8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.32■■■□□ 2.92
Rnf20Q5DTM8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.32■■■□□ 2.92
Rnf20Q5DTM8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
Rnf20Q5DTM8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.27■■■□□ 2.92
Rnf20Q5DTM8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Rnf20Q5DTM8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
Rnf20Q5DTM8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Rnf20Q5DTM8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
Rnf20Q5DTM8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
Rnf20Q5DTM8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Rnf20Q5DTM8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Rnf20Q5DTM8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC33.05■■■□□ 2.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms