RNA–Protein interactions for RNA: snR43

snR43, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR43, Length 209 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR43	snR43	MAK11	P20484	414 aa	Known RBP	4.28	□□□□□ -1.72
snR43	snR43	NUP157	P40064	1391 aa	Known RBP	4.27	□□□□□ -1.73
snR43	snR43	EDS1	P38073	919 aa		4.27	□□□□□ -1.73
snR43	snR43	RTT106	P40161	455 aa		4.27	□□□□□ -1.73
snR43	snR43	IOC2	Q12072	812 aa		4.27	□□□□□ -1.73
snR43	snR43	BUD3	P25558	1636 aa		4.27	□□□□□ -1.73
snR43	snR43	PDR15	Q04182	1529 aa	Known RBP	4.26	□□□□□ -1.73
snR43	snR43	COQ8	P27697	501 aa		4.26	□□□□□ -1.73
snR43	snR43	ULI1	P43604	169 aa		4.26	□□□□□ -1.73
snR43	snR43	ARO1	P08566	1588 aa	Known RBP	4.25	□□□□□ -1.73
snR43	snR43	VMA1	P17255	1071 aa	Known RBP	4.25	□□□□□ -1.73
snR43	snR43	SET1	P38827	1080 aa	Known RBP	4.25	□□□□□ -1.73
snR43	snR43	YJL171C	P46992	396 aa		4.25	□□□□□ -1.73
snR43	snR43	MSB4	Q12317	492 aa		4.25	□□□□□ -1.73
snR43	snR43	LDB19	Q12502	818 aa		4.25	□□□□□ -1.73
snR43	snR43	SET4	P42948	560 aa		4.23	□□□□□ -1.73
snR43	snR43	MLP2	P40457	1679 aa		4.22	□□□□□ -1.73
snR43	snR43	EAP1	P36041	632 aa	Known RBP	4.22	□□□□□ -1.73
snR43	snR43	YOL036W	Q08206	761 aa		4.21	□□□□□ -1.74
snR43	snR43	DNF3	Q12674	1656 aa		4.21	□□□□□ -1.74
snR43	snR43	CHC1	P22137	1653 aa	Known RBP	4.2	□□□□□ -1.74
snR43	snR43	PTC3	P34221	468 aa	Known RBP	4.2	□□□□□ -1.74
snR43	snR43	YAP3	P38749	330 aa		4.2	□□□□□ -1.74
snR43	snR43	BMT6	Q12291	365 aa		4.19	□□□□□ -1.74
snR43	snR43	TY3B-G	Q99315	1547 aa		4.18	□□□□□ -1.74
snR43	snR43	TRP5	P00931	707 aa	Known RBP	4.18	□□□□□ -1.74
snR43	snR43	DCW1	P36091	449 aa		4.18	□□□□□ -1.74
snR43	snR43	VPS70	P47161	811 aa		4.18	□□□□□ -1.74
snR43	snR43	MAK10	Q02197	733 aa		4.18	□□□□□ -1.74
snR43	snR43	SAM3	Q08986	587 aa		4.18	□□□□□ -1.74
snR43	snR43	RTG1	P32607	177 aa		4.17	□□□□□ -1.74
snR43	snR43	GYP5	Q12344	894 aa		4.17	□□□□□ -1.74
snR43	snR43	CAT8	P39113	1433 aa		4.15	□□□□□ -1.74
snR43	snR43	YSP2	Q06681	1438 aa		4.15	□□□□□ -1.74
snR43	snR43	SEC61	P32915	480 aa		4.15	□□□□□ -1.75
snR43	snR43	ATH1	P48016	1211 aa		4.15	□□□□□ -1.75
snR43	snR43	YNL035C	P53962	389 aa	Known RBP	4.15	□□□□□ -1.75
snR43	snR43	GRE2	Q12068	342 aa	Known RBP	4.15	□□□□□ -1.75
snR43	snR43	NCR1	Q12200	1170 aa		4.15	□□□□□ -1.75
snR43	snR43	BNR1	P40450	1375 aa		4.14	□□□□□ -1.75
snR43	snR43	SEC7	P11075	2009 aa	Known RBP	4.13	□□□□□ -1.75
snR43	snR43	TAF7	Q05021	590 aa		4.13	□□□□□ -1.75
snR43	snR43	HAP1	P0CE41	1502 aa		4.12	□□□□□ -1.75
snR43	snR43	URN1	Q06525	465 aa	Known RBP	4.12	□□□□□ -1.75
snR43	snR43	SAS10	Q12136	610 aa	Predicted RBP	4.12	□□□□□ -1.75
snR43	snR43	SOL3	P38858	249 aa		4.11	□□□□□ -1.75
snR43	snR43	DAN4	P47179	1161 aa		4.11	□□□□□ -1.75
snR43	snR43	GUT1	P32190	709 aa		4.1	□□□□□ -1.75
snR43	snR43	VHR2	P40041	505 aa		4.1	□□□□□ -1.75
snR43	snR43	JIP4	Q03361	876 aa		4.1	□□□□□ -1.75
snR43	snR43	YMR196W	Q04336	1088 aa		4.1	□□□□□ -1.75
snR43	snR43	YPR148C	Q06523	435 aa		4.1	□□□□□ -1.75
snR43	snR43	HTA1	P04911	132 aa	Known RBP	4.09	□□□□□ -1.75
snR43	snR43	HTA2	P04912	132 aa		4.09	□□□□□ -1.75
snR43	snR43	GEA1	P47102	1408 aa	Predicted RBP	4.09	□□□□□ -1.75
snR43	snR43	TFG1	P41895	735 aa	Predicted RBP	4.08	□□□□□ -1.76
snR43	snR43	SPB4	P25808	606 aa	Predicted RBP	4.07	□□□□□ -1.76
snR43	snR43	IFH1	P39520	1085 aa		4.07	□□□□□ -1.76
snR43	snR43	ILV3	P39522	585 aa	Known RBP	4.07	□□□□□ -1.76
snR43	snR43	YEL023C	P39992	682 aa		4.07	□□□□□ -1.76
snR43	snR43	THI12	P42883	340 aa		4.07	□□□□□ -1.76
snR43	snR43	THI5	P43534	340 aa		4.07	□□□□□ -1.76
snR43	snR43	THI11	P47183	340 aa		4.07	□□□□□ -1.76
snR43	snR43	YGR273C	P53329	174 aa		4.07	□□□□□ -1.76
snR43	snR43	THI13	Q07748	340 aa		4.07	□□□□□ -1.76
snR43	snR43	NOP53	Q12080	455 aa	Known RBP	4.07	□□□□□ -1.76
snR43	snR43	IPL1	P38991	367 aa		4.06	□□□□□ -1.76
snR43	snR43	CKB1	P43639	278 aa		4.06	□□□□□ -1.76
snR43	snR43	YDL129W	Q07555	291 aa		4.06	□□□□□ -1.76
snR43	snR43	YBT1	P32386	1661 aa		4.06	□□□□□ -1.76
snR43	snR43	PTC4	P38089	393 aa		4.05	□□□□□ -1.76
snR43	snR43	SAP30	P38429	201 aa		4.05	□□□□□ -1.76
snR43	snR43	NST1	P53935	1240 aa		4.05	□□□□□ -1.76
snR43	snR43	TY1B-NL2	Q99337	1749 aa	Known RBP	4.04	□□□□□ -1.76
snR43	snR43	GLN1	P32288	370 aa	Known RBP	4.04	□□□□□ -1.76
snR43	snR43	REF2	P42073	533 aa	Predicted RBP	4.04	□□□□□ -1.76
snR43	snR43	YLR326W	Q06170	240 aa	Known RBP	4.04	□□□□□ -1.76
snR43	snR43	USO1	P25386	1790 aa		4.04	□□□□□ -1.76
snR43	snR43	IML1	P47170	1584 aa		4.03	□□□□□ -1.76
snR43	snR43	PBS2	P08018	668 aa		4.03	□□□□□ -1.76
snR43	snR43	KEX1	P09620	729 aa		4.03	□□□□□ -1.76
snR43	snR43	UBP14	P38237	781 aa	Known RBP	4.03	□□□□□ -1.76
snR43	snR43	VMR1	P38735	1592 aa		4.02	□□□□□ -1.77
snR43	snR43	CHL1	P22516	861 aa	Predicted RBP	4.02	□□□□□ -1.77
snR43	snR43	MID1	P41821	548 aa		4.02	□□□□□ -1.77
snR43	snR43	YDR090C	Q03193	310 aa		4.02	□□□□□ -1.77
snR43	snR43	NUP188	P52593	1655 aa	Known RBP	4.02	□□□□□ -1.77
snR43	snR43	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
snR43	snR43	PML39	Q03760	334 aa		4.01	□□□□□ -1.77
snR43	snR43	SRB8	P25648	1427 aa		4.01	□□□□□ -1.77
snR43	snR43	MPH3	P0CE00	602 aa		4	□□□□□ -1.77
snR43	snR43	TYS1	P36421	394 aa	Known RBP	4	□□□□□ -1.77
snR43	snR43	PRE3	P38624	215 aa		4	□□□□□ -1.77
snR43	snR43	RAD54	P32863	898 aa		3.99	□□□□□ -1.77
snR43	snR43	BCK2	P33306	851 aa		3.99	□□□□□ -1.77
snR43	snR43	YDR344C	Q05510	147 aa		3.99	□□□□□ -1.77
snR43	snR43	AI4	P03878	556 aa		3.98	□□□□□ -1.77
snR43	snR43	SLI15	P38283	698 aa		3.98	□□□□□ -1.77
snR43	snR43	IES2	P40154	320 aa		3.98	□□□□□ -1.77
snR43	snR43	DIT2	P21595	489 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 49.5 ms