RNA–Protein interactions for RNA: YPL139C

UME1, Transcript of Component of both the Rpd3S and Rpd3L histone deacetylase complexes, yeastyeast

Gene UME1, Length 1,383 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UME1YPL139C THI11P47183 340 aa10.68□□□□□ -0.7
UME1YPL139C THI13Q07748 340 aa10.68□□□□□ -0.7
UME1YPL139C MST1P07236 462 aa10.67□□□□□ -0.7
UME1YPL139C KRE5P22023 1365 aa10.6□□□□□ -0.71
UME1YPL139C NUP192P47054 1683 aa10.59□□□□□ -0.71
UME1YPL139C VNX1P42839 908 aa10.58□□□□□ -0.72
UME1YPL139C YMR196WQ04336 1088 aa10.58□□□□□ -0.72
UME1YPL139C CFT1Q06632 1357 aaKnown RBP10.57□□□□□ -0.72
UME1YPL139C BCK1Q01389 1478 aa10.54□□□□□ -0.72
UME1YPL139C RAV1P47104 1357 aa10.53□□□□□ -0.72
UME1YPL139C YOR238WQ08634 303 aa10.52□□□□□ -0.73
UME1YPL139C RIA1P53893 1110 aa10.49□□□□□ -0.73
UME1YPL139C AIR2Q12476 344 aaKnown RBP10.49□□□□□ -0.73
UME1YPL139C YJL171CP46992 396 aa10.48□□□□□ -0.73
UME1YPL139C RAD9P14737 1309 aa10.48□□□□□ -0.73
UME1YPL139C SPP1Q03012 353 aa10.47□□□□□ -0.73
UME1YPL139C TY3B-IQ7LHG5 1498 aaKnown RBP10.44□□□□□ -0.74
UME1YPL139C YNR029CP53729 429 aaKnown RBP10.44□□□□□ -0.74
UME1YPL139C CAB1Q04430 367 aa10.43□□□□□ -0.74
UME1YPL139C RTC1Q08281 1341 aa10.42□□□□□ -0.74
UME1YPL139C MRX12P47084 519 aa10.41□□□□□ -0.74
UME1YPL139C FKH1P40466 484 aa10.39□□□□□ -0.75
UME1YPL139C PTP3P40048 928 aa10.39□□□□□ -0.75
UME1YPL139C APP1P53933 587 aa10.38□□□□□ -0.75
UME1YPL139C BFR2Q06631 534 aaKnown RBP10.38□□□□□ -0.75
UME1YPL139C ALD4P46367 519 aaKnown RBP10.36□□□□□ -0.75
UME1YPL139C BDF1P35817 686 aa10.35□□□□□ -0.75
UME1YPL139C PAF1P38351 445 aa10.35□□□□□ -0.75
UME1YPL139C YAH1Q12184 172 aaKnown RBP10.34□□□□□ -0.75
UME1YPL139C EPS1P40557 701 aa10.33□□□□□ -0.76
UME1YPL139C NSR1P27476 414 aaKnown RBP RIP-Chip data10.32□□□□□ -0.76not detected
UME1YPL139C RIM101P33400 625 aa10.31□□□□□ -0.76
UME1YPL139C WSC3Q12215 556 aa10.29□□□□□ -0.76
UME1YPL139C NOP7P53261 605 aaKnown RBP10.27□□□□□ -0.76
UME1YPL139C GLN1P32288 370 aaKnown RBP10.26□□□□□ -0.77
UME1YPL139C TIF11P38912 153 aaKnown RBP10.25□□□□□ -0.77
UME1YPL139C RRP5Q05022 1729 aaKnown RBP10.25□□□□□ -0.77
UME1YPL139C TAF5P38129 798 aa10.24□□□□□ -0.77
UME1YPL139C YIL055CP40523 627 aaKnown RBP10.24□□□□□ -0.77
UME1YPL139C TAF8Q03750 510 aa10.23□□□□□ -0.77
UME1YPL139C TY4B-HP0C2J7 1802 aa10.22□□□□□ -0.77
UME1YPL139C TY4B-JP47024 1803 aa10.22□□□□□ -0.77
UME1YPL139C RCM1P53972 490 aa10.22□□□□□ -0.77
UME1YPL139C PPH3P32345 308 aa10.21□□□□□ -0.78
UME1YPL139C ENT1Q12518 454 aa10.2□□□□□ -0.78
UME1YPL139C YRF1-2P40105 1681 aa10.19□□□□□ -0.78
UME1YPL139C CPS1P27614 576 aa10.19□□□□□ -0.78
UME1YPL139C BMT6Q12291 365 aa10.18□□□□□ -0.78
UME1YPL139C YAP5P40574 245 aa10.17□□□□□ -0.78
UME1YPL139C ENV9Q08651 330 aa10.17□□□□□ -0.78
UME1YPL139C ESL2P36168 1195 aa10.15□□□□□ -0.78
UME1YPL139C TFA1P36100 482 aa10.14□□□□□ -0.79
UME1YPL139C ADE6P38972 1358 aaKnown RBP10.11□□□□□ -0.79
UME1YPL139C PRP45P28004 379 aaPredicted RBP10.1□□□□□ -0.79
UME1YPL139C LDB19Q12502 818 aa10.1□□□□□ -0.79
UME1YPL139C YLR419WQ06698 1435 aaKnown RBP10.09□□□□□ -0.79
UME1YPL139C IMH1Q06704 911 aaKnown RBP10.09□□□□□ -0.79
UME1YPL139C PSK1P31374 1356 aa10.09□□□□□ -0.79
UME1YPL139C SPE2P21182 396 aa10.08□□□□□ -0.8
UME1YPL139C KIP3P53086 805 aaKnown RBP10.08□□□□□ -0.8
UME1YPL139C YMR074CQ04773 145 aa10.07□□□□□ -0.8
UME1YPL139C YIL177CP40434 1758 aa10.06□□□□□ -0.8
UME1YPL139C YJL225CP40889 1758 aa10.06□□□□□ -0.8
UME1YPL139C YML133CQ03099 1374 aa10.06□□□□□ -0.8
UME1YPL139C YLL067CQ07888 1374 aa10.06□□□□□ -0.8
UME1YPL139C YLL066CQ99208 1374 aa10.06□□□□□ -0.8
UME1YPL139C NAP1P25293 417 aaKnown RBP10.05□□□□□ -0.8
UME1YPL139C MSB3P48566 633 aaPredicted RBP10.05□□□□□ -0.8
UME1YPL139C URB1P34241 1764 aaKnown RBP10.04□□□□□ -0.8
UME1YPL139C PRP5P21372 849 aaPredicted RBP10.03□□□□□ -0.8
UME1YPL139C ORC1P54784 914 aaPredicted RBP10.01□□□□□ -0.81
UME1YPL139C FKS3Q04952 1785 aa10.01□□□□□ -0.81
UME1YPL139C GTT3P39996 337 aa10.01□□□□□ -0.81
UME1YPL139C IOC2Q12072 812 aa10.01□□□□□ -0.81
UME1YPL139C ULI1P43604 169 aa9.99□□□□□ -0.81
UME1YPL139C RPS24AP0CX31 135 aaKnown RBP9.95□□□□□ -0.82
UME1YPL139C RPS24BP0CX32 135 aaKnown RBP9.95□□□□□ -0.82
UME1YPL139C CHZ1P40019 153 aaPredicted RBP9.95□□□□□ -0.82
UME1YPL139C YRF1-3P0CX14 1859 aa9.94□□□□□ -0.82
UME1YPL139C YRF1-7P0CX15 1859 aa9.94□□□□□ -0.82
UME1YPL139C YRF1-6P53819 1859 aa9.94□□□□□ -0.82
UME1YPL139C DOT5P40553 215 aa9.94□□□□□ -0.82
UME1YPL139C PRP43P53131 767 aaKnown RBP9.94□□□□□ -0.82
UME1YPL139C RSF2P46974 1380 aa9.93□□□□□ -0.82
UME1YPL139C APC1P53886 1748 aa9.92□□□□□ -0.82
UME1YPL139C CSE4P36012 229 aa9.92□□□□□ -0.82
UME1YPL139C IES2P40154 320 aa9.92□□□□□ -0.82
UME1YPL139C SLM3Q12093 417 aa9.92□□□□□ -0.82
UME1YPL139C FOX2Q02207 900 aaKnown RBP9.91□□□□□ -0.82
UME1YPL139C LEU2P04173 364 aaPredicted RBP9.9□□□□□ -0.82
UME1YPL139C RPN11P43588 306 aaKnown RBP9.9□□□□□ -0.82
UME1YPL139C MTR4P47047 1073 aaKnown RBP9.9□□□□□ -0.82
UME1YPL139C TCB1Q12466 1186 aa9.89□□□□□ -0.83
UME1YPL139C OXP1P28273 1286 aa9.88□□□□□ -0.83
UME1YPL139C NPR2P39923 615 aa9.87□□□□□ -0.83
UME1YPL139C ROM2P51862 1356 aaKnown RBP9.85□□□□□ -0.83
UME1YPL139C LEU3P08638 886 aa9.85□□□□□ -0.83
UME1YPL139C XKS1P42826 600 aa9.84□□□□□ -0.83
UME1YPL139C AUS1Q08409 1394 aa9.84□□□□□ -0.83
UME1YPL139C BBC1P47068 1157 aa9.82□□□□□ -0.84
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms