RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeastyeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RKR1YMR247C SPT16P32558 1035 aaKnown RBP1.37□□□□□ -2.19
RKR1YMR247C ELP4Q02884 456 aaKnown RBP1.37□□□□□ -2.19
RKR1YMR247C YLR346CQ06139 101 aa1.37□□□□□ -2.19
RKR1YMR247C KIN1P13185 1064 aa1.37□□□□□ -2.19
RKR1YMR247C SLI15P38283 698 aa1.37□□□□□ -2.19
RKR1YMR247C IES2P40154 320 aa1.37□□□□□ -2.19
RKR1YMR247C MVP1P40959 511 aaKnown RBP1.37□□□□□ -2.19
RKR1YMR247C ALR1Q08269 859 aa1.37□□□□□ -2.19
RKR1YMR247C PSH1Q12161 406 aa1.37□□□□□ -2.19
RKR1YMR247C PRT1P06103 763 aaKnown RBP1.36□□□□□ -2.19
RKR1YMR247C MCM1P11746 286 aa1.36□□□□□ -2.19
RKR1YMR247C PCS60P38137 543 aaKnown RBP RIP-Chip data1.36□□□□□ -2.19 RIP-Chip
RKR1YMR247C SET4P42948 560 aa1.36□□□□□ -2.19
RKR1YMR247C VTC4P47075 721 aa1.36□□□□□ -2.19
RKR1YMR247C RGR1P19263 1082 aa1.36□□□□□ -2.19
RKR1YMR247C ORC1P54784 914 aaPredicted RBP1.36□□□□□ -2.19
RKR1YMR247C YMR196WQ04336 1088 aa1.36□□□□□ -2.19
RKR1YMR247C GUT2P32191 649 aa1.36□□□□□ -2.19
RKR1YMR247C TBF1Q02457 562 aa1.36□□□□□ -2.19
RKR1YMR247C HED1Q03937 162 aa1.36□□□□□ -2.19
RKR1YMR247C WSC3Q12215 556 aa1.36□□□□□ -2.19
RKR1YMR247C MMP1Q12372 583 aa1.36□□□□□ -2.19
RKR1YMR247C SPT2P06843 333 aaPredicted RBP1.36□□□□□ -2.19
RKR1YMR247C SOL3P38858 249 aa1.36□□□□□ -2.19
RKR1YMR247C MSB3P48566 633 aaPredicted RBP1.36□□□□□ -2.19
RKR1YMR247C NMA111P53920 997 aa1.36□□□□□ -2.19
RKR1YMR247C PUF6Q04373 656 aaKnown RBP1.36□□□□□ -2.19
RKR1YMR247C GYP1Q08484 637 aa1.36□□□□□ -2.19
RKR1YMR247C YBL029C-AQ3E756 94 aa1.36□□□□□ -2.19
RKR1YMR247C MAK16P10962 306 aaPredicted RBP1.35□□□□□ -2.19
RKR1YMR247C MRT4P33201 236 aaKnown RBP1.35□□□□□ -2.19
RKR1YMR247C SYH1Q02875 849 aaKnown RBP1.35□□□□□ -2.19
RKR1YMR247C YPR097WQ06839 1073 aa1.35□□□□□ -2.19
RKR1YMR247C ASF1P32447 279 aa1.35□□□□□ -2.19
RKR1YMR247C VHR2P40041 505 aa1.35□□□□□ -2.19
RKR1YMR247C LEM3P42838 414 aa1.35□□□□□ -2.19
RKR1YMR247C YFR006WP43590 535 aa1.35□□□□□ -2.19
RKR1YMR247C PML39Q03760 334 aa1.35□□□□□ -2.19
RKR1YMR247C CSN12P47130 423 aa1.35□□□□□ -2.19
RKR1YMR247C UTP4Q06679 776 aaKnown RBP1.35□□□□□ -2.19
RKR1YMR247C MPC54Q08550 464 aa1.35□□□□□ -2.19
RKR1YMR247C AMS1P22855 1083 aa1.34□□□□□ -2.19
RKR1YMR247C CDC4P07834 779 aa1.34□□□□□ -2.19
RKR1YMR247C TAF13P11747 167 aa1.34□□□□□ -2.19
RKR1YMR247C HAP4P14064 554 aa1.34□□□□□ -2.19
RKR1YMR247C CWH41P53008 833 aa1.34□□□□□ -2.19
RKR1YMR247C STE20Q03497 939 aaKnown RBP1.34□□□□□ -2.19
RKR1YMR247C YPR109WQ06104 294 aa1.34□□□□□ -2.19
RKR1YMR247C RSC2Q06488 889 aa1.34□□□□□ -2.19
RKR1YMR247C ARG82P07250 355 aa1.34□□□□□ -2.2
RKR1YMR247C ENT3P47160 408 aa1.34□□□□□ -2.2
RKR1YMR247C UBP1P25037 809 aa1.34□□□□□ -2.2
RKR1YMR247C RRD1P40454 393 aaKnown RBP1.34□□□□□ -2.2
RKR1YMR247C ENV11P53246 860 aa1.34□□□□□ -2.2
RKR1YMR247C YPR204WQ08995 1032 aa1.34□□□□□ -2.2
RKR1YMR247C DPH6Q12429 685 aa1.34□□□□□ -2.2
RKR1YMR247C AFT1P22149 690 aa1.33□□□□□ -2.2
RKR1YMR247C NUD1P32336 851 aa1.33□□□□□ -2.2
RKR1YMR247C RPL34BP40525 121 aaKnown RBP1.33□□□□□ -2.2
RKR1YMR247C YLL054CQ12244 843 aa1.33□□□□□ -2.2
RKR1YMR247C SLD2P34252 453 aa1.33□□□□□ -2.2
RKR1YMR247C SCD5P34758 872 aa1.33□□□□□ -2.2
RKR1YMR247C RCR1P38212 213 aa1.33□□□□□ -2.2
RKR1YMR247C SNF7P39929 240 aaKnown RBP1.33□□□□□ -2.2
RKR1YMR247C HEH2Q03281 663 aa1.33□□□□□ -2.2
RKR1YMR247C RAM1P22007 431 aa1.33□□□□□ -2.2
RKR1YMR247C SSA4P22202 642 aaKnown RBP1.33□□□□□ -2.2
RKR1YMR247C HXT10P43581 546 aa1.33□□□□□ -2.2
RKR1YMR247C LYS5P50113 272 aa1.33□□□□□ -2.2
RKR1YMR247C SVF1Q05515 481 aa1.33□□□□□ -2.2
RKR1YMR247C SLP1Q12232 587 aa1.33□□□□□ -2.2
RKR1YMR247C TEC1P18412 486 aa1.33□□□□□ -2.2
RKR1YMR247C VAC17P25591 423 aa1.33□□□□□ -2.2
RKR1YMR247C TBS1P38114 1094 aa1.33□□□□□ -2.2
RKR1YMR247C SAP30P38429 201 aa1.33□□□□□ -2.2
RKR1YMR247C DLD3P39976 496 aaKnown RBP1.33□□□□□ -2.2
RKR1YMR247C HST3P53687 447 aa1.33□□□□□ -2.2
RKR1YMR247C UBP2Q01476 1272 aa1.33□□□□□ -2.2
RKR1YMR247C FRA1Q07825 749 aa1.33□□□□□ -2.2
RKR1YMR247C YRR1Q12172 810 aa1.33□□□□□ -2.2
RKR1YMR247C GLY1P37303 387 aaKnown RBP1.32□□□□□ -2.2
RKR1YMR247C SPR3P41901 512 aa1.32□□□□□ -2.2
RKR1YMR247C NUP85P46673 744 aa1.32□□□□□ -2.2
RKR1YMR247C MSN5P52918 1224 aa1.32□□□□□ -2.2
RKR1YMR247C FPK1P53739 893 aa1.32□□□□□ -2.2
RKR1YMR247C GAS4Q08271 471 aa1.32□□□□□ -2.2
RKR1YMR247C MCM16Q12262 181 aa1.32□□□□□ -2.2
RKR1YMR247C TRS33Q99394 268 aa1.32□□□□□ -2.2
RKR1YMR247C RRN6P32786 894 aa1.32□□□□□ -2.2
RKR1YMR247C YBL036CP38197 257 aa1.32□□□□□ -2.2
RKR1YMR247C RSC30P38781 883 aa1.32□□□□□ -2.2
RKR1YMR247C PHO87P25360 923 aa1.32□□□□□ -2.2
RKR1YMR247C NAB2P32505 525 aaKnown RBP RIP-Chip data1.32□□□□□ -2.2not detected
RKR1YMR247C ARL1P38116 183 aaKnown RBP1.32□□□□□ -2.2
RKR1YMR247C RPP2AP05319 106 aaKnown RBP1.31□□□□□ -2.2
RKR1YMR247C DAL1P32375 460 aa1.31□□□□□ -2.2
RKR1YMR247C VRP1P37370 817 aa1.31□□□□□ -2.2
RKR1YMR247C RMD1Q03441 430 aa1.31□□□□□ -2.2
RKR1YMR247C SEC20P28791 383 aa1.31□□□□□ -2.2
RKR1YMR247C EMW1P42842 904 aaKnown RBP1.31□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms