RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W SWR1Q05471 1514 aa9.92□□□□□ -0.82
UFD1YGR048W PML39Q03760 334 aa9.91□□□□□ -0.82
UFD1YGR048W YDL129WQ07555 291 aa9.91□□□□□ -0.82
UFD1YGR048W ESP1Q03018 1630 aa9.9□□□□□ -0.82
UFD1YGR048W RNA1P11745 407 aaKnown RBP9.9□□□□□ -0.82
UFD1YGR048W NOP58Q12499 511 aaKnown RBP9.9□□□□□ -0.82
UFD1YGR048W MHP1P43638 1398 aa9.89□□□□□ -0.83
UFD1YGR048W DEF1P35732 738 aaKnown RBP9.89□□□□□ -0.83
UFD1YGR048W YGR273CP53329 174 aa9.89□□□□□ -0.83
UFD1YGR048W SLN1P39928 1220 aaPredicted RBP9.88□□□□□ -0.83
UFD1YGR048W FPR4Q06205 392 aaPredicted RBP9.88□□□□□ -0.83
UFD1YGR048W DMA1P38823 416 aa9.87□□□□□ -0.83
UFD1YGR048W ILV3P39522 585 aaKnown RBP9.87□□□□□ -0.83
UFD1YGR048W TSC11P40061 1430 aa9.87□□□□□ -0.83
UFD1YGR048W DNA2P38859 1522 aa9.86□□□□□ -0.83
UFD1YGR048W MID1P41821 548 aa9.85□□□□□ -0.83
UFD1YGR048W KRI1P42846 591 aaKnown RBP9.85□□□□□ -0.83
UFD1YGR048W CTR9P89105 1077 aa9.85□□□□□ -0.83
UFD1YGR048W MPH3P0CE00 602 aa9.84□□□□□ -0.83
UFD1YGR048W SNQ2P32568 1501 aaKnown RBP9.83□□□□□ -0.84
UFD1YGR048W YCF1P39109 1515 aaKnown RBP9.83□□□□□ -0.84
UFD1YGR048W AI4P03878 556 aa9.83□□□□□ -0.84
UFD1YGR048W NAP1P25293 417 aaKnown RBP9.83□□□□□ -0.84
UFD1YGR048W YRB30P53107 440 aaPredicted RBP9.83□□□□□ -0.84
UFD1YGR048W EDE1P34216 1381 aa9.83□□□□□ -0.84
UFD1YGR048W NOT3P06102 836 aaKnown RBP9.82□□□□□ -0.84
UFD1YGR048W FUN12P39730 1002 aaKnown RBP9.81□□□□□ -0.84
UFD1YGR048W YDR344CQ05510 147 aa9.81□□□□□ -0.84
UFD1YGR048W NUP159P40477 1460 aa9.8□□□□□ -0.84
UFD1YGR048W YOR1P53049 1477 aa9.8□□□□□ -0.84
UFD1YGR048W SPC110P32380 944 aa9.8□□□□□ -0.84
UFD1YGR048W GEA1P47102 1408 aaPredicted RBP9.8□□□□□ -0.84
UFD1YGR048W SMC3P47037 1230 aa9.78□□□□□ -0.84
UFD1YGR048W KOG1P38873 1557 aa9.78□□□□□ -0.84
UFD1YGR048W VHR2P40041 505 aa9.77□□□□□ -0.85
UFD1YGR048W PCT1P13259 424 aa9.76□□□□□ -0.85
UFD1YGR048W DJP1P40564 432 aa9.76□□□□□ -0.85
UFD1YGR048W GCN2P15442 1659 aa9.76□□□□□ -0.85
UFD1YGR048W YPP1P46951 817 aa9.75□□□□□ -0.85
UFD1YGR048W PEX29Q03370 554 aa9.75□□□□□ -0.85
UFD1YGR048W KEX1P09620 729 aa9.74□□□□□ -0.85
UFD1YGR048W VPS24P36095 224 aaKnown RBP9.74□□□□□ -0.85
UFD1YGR048W NMD2P38798 1089 aaKnown RBP9.74□□□□□ -0.85
UFD1YGR048W RKR1Q04781 1562 aa9.74□□□□□ -0.85
UFD1YGR048W MSP1P28737 362 aa9.73□□□□□ -0.85
UFD1YGR048W IFH1P39520 1085 aa9.73□□□□□ -0.85
UFD1YGR048W RAD26P40352 1085 aa9.73□□□□□ -0.85
UFD1YGR048W CDC45Q08032 650 aa9.73□□□□□ -0.85
UFD1YGR048W RPP0P05317 312 aaKnown RBP9.72□□□□□ -0.85
UFD1YGR048W VPS70P47161 811 aa9.72□□□□□ -0.85
UFD1YGR048W SLI15P38283 698 aa9.71□□□□□ -0.86
UFD1YGR048W PRE3P38624 215 aa9.71□□□□□ -0.86
UFD1YGR048W YLR326WQ06170 240 aaKnown RBP9.71□□□□□ -0.86
UFD1YGR048W SPT2P06843 333 aaPredicted RBP9.7□□□□□ -0.86
UFD1YGR048W ELP4Q02884 456 aaKnown RBP9.7□□□□□ -0.86
UFD1YGR048W ARL1P38116 183 aaKnown RBP9.69□□□□□ -0.86
UFD1YGR048W UBP14P38237 781 aaKnown RBP9.69□□□□□ -0.86
UFD1YGR048W VPS27P40343 622 aaKnown RBP9.69□□□□□ -0.86
UFD1YGR048W PDR15Q04182 1529 aaKnown RBP9.69□□□□□ -0.86
UFD1YGR048W ESC1Q03661 1658 aaKnown RBP9.68□□□□□ -0.86
UFD1YGR048W CHL1P22516 861 aaPredicted RBP9.68□□□□□ -0.86
UFD1YGR048W KNS1P32350 737 aaPredicted RBP9.68□□□□□ -0.86
UFD1YGR048W HSP82P02829 709 aaKnown RBP9.67□□□□□ -0.86
UFD1YGR048W PLP2Q12017 286 aa9.67□□□□□ -0.86
UFD1YGR048W RVB2Q12464 471 aaKnown RBP9.67□□□□□ -0.86
UFD1YGR048W MPC54Q08550 464 aa9.66□□□□□ -0.86
UFD1YGR048W TRM3Q07527 1436 aa9.65□□□□□ -0.86
UFD1YGR048W LSP1Q12230 341 aaKnown RBP9.65□□□□□ -0.86
UFD1YGR048W RPN1P38764 993 aaKnown RBP9.64□□□□□ -0.87
UFD1YGR048W VPS15P22219 1454 aa9.64□□□□□ -0.87
UFD1YGR048W PCS60P38137 543 aaKnown RBP RIP-Chip data9.63□□□□□ -0.87not detected
UFD1YGR048W CHZ1P40019 153 aaPredicted RBP9.63□□□□□ -0.87
UFD1YGR048W ARH1P48360 493 aa9.63□□□□□ -0.87
UFD1YGR048W KIP3P53086 805 aaKnown RBP9.63□□□□□ -0.87
UFD1YGR048W DNF1P32660 1571 aa9.63□□□□□ -0.87
UFD1YGR048W RAD54P32863 898 aa9.62□□□□□ -0.87
UFD1YGR048W PDR5P33302 1511 aaKnown RBP9.61□□□□□ -0.87
UFD1YGR048W MSH4P40965 878 aaPredicted RBP9.61□□□□□ -0.87
UFD1YGR048W PDS5Q04264 1277 aa9.61□□□□□ -0.87
UFD1YGR048W NUP157P40064 1391 aaKnown RBP9.61□□□□□ -0.87
UFD1YGR048W REF2P42073 533 aaPredicted RBP9.6□□□□□ -0.87
UFD1YGR048W VPS4P52917 437 aa9.6□□□□□ -0.87
UFD1YGR048W TY3B-GQ99315 1547 aa9.6□□□□□ -0.87
UFD1YGR048W TPM2P40414 161 aa9.59□□□□□ -0.87
UFD1YGR048W YDR090CQ03193 310 aa9.59□□□□□ -0.87
UFD1YGR048W CDC73Q06697 393 aa9.59□□□□□ -0.87
UFD1YGR048W ULS1Q08562 1619 aa9.59□□□□□ -0.87
UFD1YGR048W TEA1P47988 759 aa9.58□□□□□ -0.88
UFD1YGR048W PIL1P53252 339 aaKnown RBP9.58□□□□□ -0.88
UFD1YGR048W YNL011CP53980 444 aa9.58□□□□□ -0.88
UFD1YGR048W HAP5Q02516 242 aa9.58□□□□□ -0.88
UFD1YGR048W CLB5P30283 435 aa9.57□□□□□ -0.88
UFD1YGR048W BYE1P36106 594 aa9.57□□□□□ -0.88
UFD1YGR048W SIC1P38634 284 aa9.57□□□□□ -0.88
UFD1YGR048W DSN1P40568 576 aa9.57□□□□□ -0.88
UFD1YGR048W NOP7P53261 605 aaKnown RBP9.57□□□□□ -0.88
UFD1YGR048W NMA111P53920 997 aa9.57□□□□□ -0.88
UFD1YGR048W DPL1Q05567 589 aa9.57□□□□□ -0.88
UFD1YGR048W PSH1Q12161 406 aa9.57□□□□□ -0.88
UFD1YGR048W GEA2P39993 1459 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 27.8 ms