RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	TY1A-DR4	O74302	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-H	P0C2I4	478 aa	Known RBP	4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-A	P0CX57	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-PR1	P0CX58	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-OR	P0CX59	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-PR2	P0CX60	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-DR5	P0CX65	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-ER2	P0CX66	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-GR3	P0CX67	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-LR1	P0CX68	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-MR2	P0CX69	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	SEC2	P17065	759 aa		4.35	□□□□□ -1.71
USE1	YGL098W	ASH1	P34233	588 aa		4.35	□□□□□ -1.71
USE1	YGL098W	ENP1	P38333	483 aa	Known RBP	4.35	□□□□□ -1.71
USE1	YGL098W	BDP1	P46678	594 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-JR2	P47099	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-DR1	Q03856	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-ML1	Q04706	440 aa	Known RBP	4.35	□□□□□ -1.71
USE1	YGL098W	YRR1	Q12172	810 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-BR	Q12217	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-NL2	Q12470	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	TY1A-GR2	Q12485	440 aa		4.35	□□□□□ -1.71
USE1	YGL098W	MNN4	P36044	1178 aa		4.34	□□□□□ -1.71
USE1	YGL098W	GAP1	P19145	602 aa	Predicted RBP	4.33	□□□□□ -1.72
USE1	YGL098W	ICP55	P40051	511 aa		4.33	□□□□□ -1.72
USE1	YGL098W	AFT1	P22149	690 aa		4.32	□□□□□ -1.72
USE1	YGL098W	YGR035C	P53222	116 aa		4.32	□□□□□ -1.72
USE1	YGL098W	YDR090C	Q03193	310 aa		4.32	□□□□□ -1.72
USE1	YGL098W	YPR148C	Q06523	435 aa		4.32	□□□□□ -1.72
USE1	YGL098W	MET32	Q12041	191 aa		4.32	□□□□□ -1.72
USE1	YGL098W	RAD54	P32863	898 aa		4.3	□□□□□ -1.72
USE1	YGL098W	SET1	P38827	1080 aa	Known RBP	4.3	□□□□□ -1.72
USE1	YGL098W	NUD1	P32336	851 aa		4.29	□□□□□ -1.72
USE1	YGL098W	SPT16	P32558	1035 aa	Known RBP	4.29	□□□□□ -1.72
USE1	YGL098W	TCB3	Q03640	1545 aa	Known RBP	4.28	□□□□□ -1.72
USE1	YGL098W	TAF7	Q05021	590 aa		4.28	□□□□□ -1.72
USE1	YGL098W	HPF1	Q05164	967 aa		4.28	□□□□□ -1.72
USE1	YGL098W	PUS1	Q12211	544 aa	Known RBP	4.27	□□□□□ -1.73
USE1	YGL098W	YJR115W	P47152	169 aa		4.26	□□□□□ -1.73
USE1	YGL098W	TCB2	P48231	1178 aa		4.26	□□□□□ -1.73
USE1	YGL098W	TUM1	Q08686	304 aa	Known RBP	4.26	□□□□□ -1.73
USE1	YGL098W	HST3	P53687	447 aa		4.25	□□□□□ -1.73
USE1	YGL098W	GCD11	P32481	527 aa	Known RBP	4.24	□□□□□ -1.73
USE1	YGL098W	QCR6	P00127	147 aa		4.23	□□□□□ -1.73
USE1	YGL098W	SEC3	P33332	1336 aa	Known RBP	4.22	□□□□□ -1.73
USE1	YGL098W	POL5	P39985	1022 aa	Known RBP	4.22	□□□□□ -1.73
USE1	YGL098W	INO80	P53115	1489 aa		4.22	□□□□□ -1.73
USE1	YGL098W	RPP1B	P10622	106 aa	Known RBP	4.21	□□□□□ -1.74
USE1	YGL098W	RPS0B	P46654	252 aa	Known RBP	4.21	□□□□□ -1.74
USE1	YGL098W	VPS70	P47161	811 aa		4.21	□□□□□ -1.74
USE1	YGL098W	ERF2	Q06551	359 aa		4.21	□□□□□ -1.74
USE1	YGL098W	CHD1	P32657	1468 aa		4.21	□□□□□ -1.74
USE1	YGL098W	RRN7	P40992	514 aa		4.2	□□□□□ -1.74
USE1	YGL098W	PEX21	P50091	288 aa		4.2	□□□□□ -1.74
USE1	YGL098W	TFB4	Q12004	338 aa		4.2	□□□□□ -1.74
USE1	YGL098W	MMS22	Q06164	1454 aa		4.19	□□□□□ -1.74
USE1	YGL098W	STH1	P32597	1359 aa		4.19	□□□□□ -1.74
USE1	YGL098W	CLC1	P17891	233 aa		4.19	□□□□□ -1.74
USE1	YGL098W	ORC6	P38826	435 aa		4.19	□□□□□ -1.74
USE1	YGL098W	YFR016C	P43597	1233 aa	Known RBP	4.19	□□□□□ -1.74
USE1	YGL098W	CSC1	Q06538	782 aa		4.19	□□□□□ -1.74
USE1	YGL098W	YIR007W	P40566	764 aa		4.18	□□□□□ -1.74
USE1	YGL098W	YPR204W	Q08995	1032 aa		4.18	□□□□□ -1.74
USE1	YGL098W	AIM44	Q99299	758 aa		4.18	□□□□□ -1.74
USE1	YGL098W	SPP41	P38904	1435 aa		4.18	□□□□□ -1.74
USE1	YGL098W	EAF7	P53911	425 aa	Known RBP	4.17	□□□□□ -1.74
USE1	YGL098W	OPT2	Q06593	877 aa		4.17	□□□□□ -1.74
USE1	YGL098W	PHM7	Q12252	991 aa		4.17	□□□□□ -1.74
USE1	YGL098W	NPL4	P33755	580 aa		4.16	□□□□□ -1.74
USE1	YGL098W	LEO1	P38439	464 aa		4.16	□□□□□ -1.74
USE1	YGL098W	MOD5	P07884	428 aa		4.15	□□□□□ -1.75
USE1	YGL098W	UFD4	P33202	1483 aa		4.15	□□□□□ -1.75
USE1	YGL098W	MVP1	P40959	511 aa	Known RBP	4.14	□□□□□ -1.75
USE1	YGL098W	PUS5	Q06244	254 aa		4.14	□□□□□ -1.75
USE1	YGL098W	RLF2	Q12495	606 aa		4.14	□□□□□ -1.75
USE1	YGL098W	SPT7	P35177	1332 aa		4.14	□□□□□ -1.75
USE1	YGL098W	KEX2	P13134	814 aa		4.13	□□□□□ -1.75
USE1	YGL098W	PAC1	P39946	494 aa	Known RBP	4.13	□□□□□ -1.75
USE1	YGL098W	YPR109W	Q06104	294 aa		4.13	□□□□□ -1.75
USE1	YGL098W	PAT1	P25644	796 aa	Known RBP	4.12	□□□□□ -1.75
USE1	YGL098W	IME2	P32581	645 aa		4.12	□□□□□ -1.75
USE1	YGL098W	PRS1	P32895	427 aa	Known RBP	4.12	□□□□□ -1.75
USE1	YGL098W	FPR3	P38911	411 aa	Known RBP	4.12	□□□□□ -1.75
USE1	YGL098W	IKI3	Q06706	1349 aa	Known RBP	4.12	□□□□□ -1.75
USE1	YGL098W	MDJ1	P35191	511 aa		4.11	□□□□□ -1.75
USE1	YGL098W	KIC1	P38692	1080 aa		4.11	□□□□□ -1.75
USE1	YGL098W	RIX1	P38883	763 aa	Predicted RBP	4.11	□□□□□ -1.75
USE1	YGL098W	RGR1	P19263	1082 aa		4.1	□□□□□ -1.75
USE1	YGL098W	GLY1	P37303	387 aa	Known RBP	4.1	□□□□□ -1.75
USE1	YGL098W	CCT8	P47079	568 aa	Known RBP	4.1	□□□□□ -1.75
USE1	YGL098W	MSB3	P48566	633 aa	Predicted RBP	4.1	□□□□□ -1.75
USE1	YGL098W	YRB30	P53107	440 aa	Predicted RBP	4.1	□□□□□ -1.75
USE1	YGL098W	AGE1	Q04412	482 aa		4.1	□□□□□ -1.75
USE1	YGL098W	YLR346C	Q06139	101 aa		4.1	□□□□□ -1.75
USE1	YGL098W	ECM5	Q03214	1411 aa		4.09	□□□□□ -1.75
USE1	YGL098W	XRN1	P22147	1528 aa	Known RBP	4.09	□□□□□ -1.75
USE1	YGL098W	RNA1	P11745	407 aa	Known RBP	4.08	□□□□□ -1.76
USE1	YGL098W	REF2	P42073	533 aa	Predicted RBP	4.08	□□□□□ -1.76
USE1	YGL098W	SAS10	Q12136	610 aa	Predicted RBP	4.08	□□□□□ -1.76
USE1	YGL098W	DEF1	P35732	738 aa	Known RBP	4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms