RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 USP35Q9P2H5 1018 aa14.42□□□□□ -0.1
CLN3-244ENST00000636147 FGD6Q6ZV73 1430 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 NBPF8Q3BBV2 869 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 TSPY4P0CV99 314 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 TSPY10P0CW01 314 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 GLIPR1L2Q4G1C9 344 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 SPRYD3Q8NCJ5 442 aa14.41□□□□□ -0.1
CLN3-244ENST00000636147 NAP1L5Q96NT1 182 aaPredicted RBP14.41□□□□□ -0.1
CLN3-244ENST00000636147 ERICH3Q5RHP9 1530 aa14.4□□□□□ -0.1
CLN3-244ENST00000636147 ST20-MTHFSA0A0A6YYL1 179 aa14.39□□□□□ -0.11
CLN3-244ENST00000636147 CRBNQ96SW2 442 aa14.39□□□□□ -0.11
CLN3-244ENST00000636147 BECN1Q14457 450 aa14.38□□□□□ -0.11
CLN3-244ENST00000636147 NEUROD2Q15784 382 aa14.38□□□□□ -0.11
CLN3-244ENST00000636147 HSP90AA1P07900 732 aaKnown RBP14.37□□□□□ -0.11
CLN3-244ENST00000636147 NFKBIBQ15653 356 aa14.37□□□□□ -0.11
CLN3-244ENST00000636147 CDCA7LQ96GN5 454 aa14.37□□□□□ -0.11
CLN3-244ENST00000636147 TDRD9Q8NDG6 1382 aaKnown RBP14.36□□□□□ -0.11
CLN3-244ENST00000636147 FRAT1Q92837 279 aaPredicted RBP14.36□□□□□ -0.11
CLN3-244ENST00000636147 GZF1Q9H116 711 aaPredicted RBP14.36□□□□□ -0.11
CLN3-244ENST00000636147 ARID4BQ4LE39 1312 aaPredicted RBP14.35□□□□□ -0.11
CLN3-244ENST00000636147 TIAM1Q13009 1591 aa14.34□□□□□ -0.11
CLN3-244ENST00000636147 KNSTRNQ9Y448 316 aa14.34□□□□□ -0.11
CLN3-244ENST00000636147 USP47Q96K76 1375 aa14.34□□□□□ -0.11
CLN3-244ENST00000636147 RALBP1Q15311 655 aa14.33□□□□□ -0.11
CLN3-244ENST00000636147 NLRP13Q86W25 1043 aa14.33□□□□□ -0.12
CLN3-244ENST00000636147 BACH2Q9BYV9 841 aa14.32□□□□□ -0.12
CLN3-244ENST00000636147 TOP2BQ02880 1626 aa14.31□□□□□ -0.12
CLN3-244ENST00000636147 KTN1Q86UP2 1357 aaKnown RBP14.31□□□□□ -0.12
CLN3-244ENST00000636147 PNISRQ8TF01 805 aaKnown RBP14.31□□□□□ -0.12
CLN3-244ENST00000636147 MYBBP1AQ9BQG0 1328 aaKnown RBP14.3□□□□□ -0.12
CLN3-244ENST00000636147 ZNF644Q9H582 1327 aaPredicted RBP14.3□□□□□ -0.12
CLN3-244ENST00000636147 MS4A1P11836 297 aa14.3□□□□□ -0.12
CLN3-244ENST00000636147 FRAT2O75474 233 aaPredicted RBP14.28□□□□□ -0.12
CLN3-244ENST00000636147 SMG6Q86US8 1419 aaKnown RBP14.27□□□□□ -0.12
CLN3-244ENST00000636147 PDE3BQ13370 1112 aa14.27□□□□□ -0.12
CLN3-244ENST00000636147 HFM1A2PYH4 1435 aa14.27□□□□□ -0.13
CLN3-244ENST00000636147 KIF15Q9NS87 1388 aa14.27□□□□□ -0.13
CLN3-244ENST00000636147 TNNT2P45379 298 aaPredicted RBP14.27□□□□□ -0.13
CLN3-244ENST00000636147 TRIM44Q96DX7 344 aaPredicted RBP14.27□□□□□ -0.13
CLN3-244ENST00000636147 CUX1P39880 1505 aa14.27□□□□□ -0.13
CLN3-244ENST00000636147 MYOM3Q5VTT5 1437 aa14.27□□□□□ -0.13
CLN3-244ENST00000636147 NAIPQ13075 1403 aa14.26□□□□□ -0.13
CLN3-244ENST00000636147 FAM161AQ3B820 660 aa14.26□□□□□ -0.13
CLN3-244ENST00000636147 CCDC146Q8IYE0 955 aa14.26□□□□□ -0.13
CLN3-244ENST00000636147 NUP155O75694 1391 aa14.25□□□□□ -0.13
CLN3-244ENST00000636147 ANP32BQ92688 251 aaKnown RBP14.25□□□□□ -0.13
CLN3-244ENST00000636147 ROCK2O75116 1388 aaKnown RBP14.25□□□□□ -0.13
CLN3-244ENST00000636147 NCOA2Q15596 1464 aa14.24□□□□□ -0.13
CLN3-244ENST00000636147 CFTRP13569 1480 aa14.23□□□□□ -0.13
CLN3-244ENST00000636147 FGD5Q6ZNL6 1462 aa14.23□□□□□ -0.13
CLN3-244ENST00000636147 CHGAP10645 457 aaKnown RBP14.23□□□□□ -0.13
CLN3-244ENST00000636147 PNNQ9H307 717 aaKnown RBP14.23□□□□□ -0.13
CLN3-244ENST00000636147 CASKIN1Q8WXD9 1431 aa14.22□□□□□ -0.13
CLN3-244ENST00000636147 PLEKHD1A6NEE1 506 aa14.22□□□□□ -0.13
CLN3-244ENST00000636147 SENP3Q9H4L4 574 aaPredicted RBP14.22□□□□□ -0.13
CLN3-244ENST00000636147 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
CLN3-244ENST00000636147 PANK3Q9H999 370 aa14.22□□□□□ -0.13
CLN3-244ENST00000636147 RAD54L2Q9Y4B4 1467 aa14.21□□□□□ -0.13
CLN3-244ENST00000636147 TMF1P82094 1093 aa14.21□□□□□ -0.13
CLN3-244ENST00000636147 CENPQQ7L2Z9 268 aaPredicted RBP14.21□□□□□ -0.13
CLN3-244ENST00000636147 GOLGA2Q08379 1002 aa14.21□□□□□ -0.14
CLN3-244ENST00000636147 L1TD1Q5T7N2 865 aaKnown RBP14.21□□□□□ -0.14
CLN3-244ENST00000636147 PTPRKQ15262 1439 aa14.19□□□□□ -0.14
CLN3-244ENST00000636147 AQRO60306 1485 aaKnown RBP eCLIP14.19□□□□□ -0.146e-6■■■■□ 25.1
CLN3-244ENST00000636147 CLUAP1Q96AJ1 413 aa14.19□□□□□ -0.14
CLN3-244ENST00000636147 RSPH6AQ9H0K4 717 aa14.19□□□□□ -0.14
CLN3-244ENST00000636147 UNC13AQ9UPW8 1703 aa14.17□□□□□ -0.14
CLN3-244ENST00000636147 BICRAQ9NZM4 1560 aa14.16□□□□□ -0.14
CLN3-244ENST00000636147 NCLP19338 710 aaKnown RBP14.16□□□□□ -0.14
CLN3-244ENST00000636147 C20orf194Q5TEA3 1177 aa14.16□□□□□ -0.14
CLN3-244ENST00000636147 VSIG10Q8N0Z9 540 aa14.16□□□□□ -0.14
CLN3-244ENST00000636147 NCOA1Q15788 1441 aa14.16□□□□□ -0.14
CLN3-244ENST00000636147 CHMP7Q8WUX9 453 aaPredicted RBP14.16□□□□□ -0.14
CLN3-244ENST00000636147 FYCO1Q9BQS8 1478 aa14.15□□□□□ -0.14
CLN3-244ENST00000636147 GOLGA6L3A6NEY3 463 aa14.15□□□□□ -0.14
CLN3-244ENST00000636147 FTSJ3Q8IY81 847 aaKnown RBP14.15□□□□□ -0.14
CLN3-244ENST00000636147 PCF11O94913 1555 aaKnown RBP14.15□□□□□ -0.15
CLN3-244ENST00000636147 COG6Q9Y2V7 657 aa14.14□□□□□ -0.15
CLN3-244ENST00000636147 BCL2L13Q9BXK5 485 aa14.14□□□□□ -0.15
CLN3-244ENST00000636147 ADAMTS8Q9UP79 889 aa14.14□□□□□ -0.15
CLN3-244ENST00000636147 BRD4O60885 1362 aaPredicted RBP14.13□□□□□ -0.15
CLN3-244ENST00000636147 MFAP1P55081 439 aaKnown RBP14.12□□□□□ -0.15
CLN3-244ENST00000636147 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLN3-244ENST00000636147 APAF1O14727 1248 aa14.12□□□□□ -0.15
CLN3-244ENST00000636147 HNRNPMP52272 730 aaKnown RBP eCLIP14.11□□□□□ -0.15
CLN3-244ENST00000636147 ARID3AQ99856 593 aa14.11□□□□□ -0.15
CLN3-244ENST00000636147 RRP7AQ9Y3A4 280 aaKnown RBP14.1□□□□□ -0.15
CLN3-244ENST00000636147 ANKRD30AQ9BXX3 1397 aa14.1□□□□□ -0.15
CLN3-244ENST00000636147 POGKQ9P215 609 aa14.1□□□□□ -0.15
CLN3-244ENST00000636147 HSP90AA2PQ14568 343 aaPredicted RBP14.09□□□□□ -0.15
CLN3-244ENST00000636147 HSP90AB1P08238 724 aaKnown RBP14.09□□□□□ -0.15
CLN3-244ENST00000636147 CDCA8Q53HL2 280 aa14.09□□□□□ -0.15
CLN3-244ENST00000636147 HSCBQ8IWL3 235 aa14.09□□□□□ -0.15
CLN3-244ENST00000636147 FOXD4L1Q9NU39 408 aa14.09□□□□□ -0.15
CLN3-244ENST00000636147 NBPF1Q3BBV0 1214 aa14.08□□□□□ -0.15
CLN3-244ENST00000636147 MAP3K1Q13233 1512 aa14.08□□□□□ -0.16
CLN3-244ENST00000636147 MYH16Q9H6N6 1097 aa14.07□□□□□ -0.16
CLN3-244ENST00000636147 ANKRD30BQ9BXX2 1392 aa14.07□□□□□ -0.16
CLN3-244ENST00000636147 PANK1Q8TE04 598 aa14.07□□□□□ -0.16
CLN3-244ENST00000636147 TPRNQ4KMQ1 711 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms