RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 NUDCQ9Y266 331 aa17.67■□□□□ 0.42
MSH6-214ENST00000616033 EXOC6Q8TAG9 804 aa17.66■□□□□ 0.42
MSH6-214ENST00000616033 PKNOX2Q96KN3 472 aa17.66■□□□□ 0.42
MSH6-214ENST00000616033 SLC4A1APQ9BWU0 796 aaKnown RBP17.63■□□□□ 0.41
MSH6-214ENST00000616033 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
MSH6-214ENST00000616033 NAIPQ13075 1403 aa17.62■□□□□ 0.41
MSH6-214ENST00000616033 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
MSH6-214ENST00000616033 BRPF3Q9ULD4 1205 aa17.62■□□□□ 0.41
MSH6-214ENST00000616033 FMN1Q68DA7 1419 aa17.61■□□□□ 0.41
MSH6-214ENST00000616033 PLIN1O60240 522 aa17.61■□□□□ 0.41
MSH6-214ENST00000616033 KDM2AQ9Y2K7 1162 aa17.61■□□□□ 0.41
MSH6-214ENST00000616033 ERCC6Q03468 1493 aa17.59■□□□□ 0.41
MSH6-214ENST00000616033 LAMC3Q9Y6N6 1575 aa17.58■□□□□ 0.4
MSH6-214ENST00000616033 HFM1A2PYH4 1435 aa17.58■□□□□ 0.4
MSH6-214ENST00000616033 PDE4AP27815 886 aa17.57■□□□□ 0.4
MSH6-214ENST00000616033 DAXXQ9UER7 740 aaPredicted RBP17.57■□□□□ 0.4
MSH6-214ENST00000616033 PRDM2Q13029 1718 aa17.56■□□□□ 0.4
MSH6-214ENST00000616033 ZNF777Q9ULD5 760 aaPredicted RBP17.55■□□□□ 0.4
MSH6-214ENST00000616033 CHMP7Q8WUX9 453 aaPredicted RBP17.54■□□□□ 0.4
MSH6-214ENST00000616033 KIF21AQ7Z4S6 1674 aa17.54■□□□□ 0.4
MSH6-214ENST00000616033 ARXQ96QS3 562 aa17.53■□□□□ 0.4
MSH6-214ENST00000616033 PTPN23Q9H3S7 1636 aa17.53■□□□□ 0.4
MSH6-214ENST00000616033 ZNF608Q9ULD9 1512 aaPredicted RBP17.52■□□□□ 0.4
MSH6-214ENST00000616033 MAP3K1Q13233 1512 aa17.52■□□□□ 0.39
MSH6-214ENST00000616033 NCOA2Q15596 1464 aa17.51■□□□□ 0.39
MSH6-214ENST00000616033 CDCA7LQ96GN5 454 aa17.5■□□□□ 0.39
MSH6-214ENST00000616033 CASKIN1Q8WXD9 1431 aa17.49■□□□□ 0.39
MSH6-214ENST00000616033 RCAN3Q9UKA8 241 aa17.49■□□□□ 0.39
MSH6-214ENST00000616033 ZNF644Q9H582 1327 aaPredicted RBP17.49■□□□□ 0.39
MSH6-214ENST00000616033 VSIG10Q8N0Z9 540 aa17.49■□□□□ 0.39
MSH6-214ENST00000616033 NCOA1Q15788 1441 aa17.48■□□□□ 0.39
MSH6-214ENST00000616033 RRP1P56182 461 aaKnown RBP17.48■□□□□ 0.39
MSH6-214ENST00000616033 MYOM3Q5VTT5 1437 aa17.47■□□□□ 0.39
MSH6-214ENST00000616033 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
MSH6-214ENST00000616033 PNISRQ8TF01 805 aaKnown RBP17.46■□□□□ 0.38
MSH6-214ENST00000616033 FYCO1Q9BQS8 1478 aa17.45■□□□□ 0.38
MSH6-214ENST00000616033 KDM5BQ9UGL1 1544 aa17.44■□□□□ 0.38
MSH6-214ENST00000616033 CARD11Q9BXL7 1154 aa17.44■□□□□ 0.38
MSH6-214ENST00000616033 MRC2Q9UBG0 1479 aa17.43■□□□□ 0.38
MSH6-214ENST00000616033 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
MSH6-214ENST00000616033 TCERG1O14776 1098 aaKnown RBP17.43■□□□□ 0.38
MSH6-214ENST00000616033 RGS3P49796 1198 aa17.43■□□□□ 0.38
MSH6-214ENST00000616033 CFAP43Q8NDM7 1665 aa17.42■□□□□ 0.38
MSH6-214ENST00000616033 CC2D1BQ5T0F9 858 aaKnown RBP17.42■□□□□ 0.38
MSH6-214ENST00000616033 BACH2Q9BYV9 841 aa17.42■□□□□ 0.38
MSH6-214ENST00000616033 PPM1GO15355 546 aaPredicted RBP17.41■□□□□ 0.38
MSH6-214ENST00000616033 USP47Q96K76 1375 aa17.4■□□□□ 0.38
MSH6-214ENST00000616033 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.4■□□□□ 0.384e-9■■■□□ 16.4
MSH6-214ENST00000616033 FRAT1Q92837 279 aaPredicted RBP17.4■□□□□ 0.38
MSH6-214ENST00000616033 CRBNQ96SW2 442 aa17.4■□□□□ 0.38
MSH6-214ENST00000616033 ST20-MTHFSA0A0A6YYL1 179 aa17.39■□□□□ 0.37
MSH6-214ENST00000616033 NFKBIBQ15653 356 aa17.39■□□□□ 0.37
MSH6-214ENST00000616033 PODXL2Q9NZ53 605 aa17.39■□□□□ 0.37
MSH6-214ENST00000616033 KDM6BO15054 1643 aa17.39■□□□□ 0.37
MSH6-214ENST00000616033 GSE1Q14687 1217 aa17.38■□□□□ 0.37
MSH6-214ENST00000616033 A0A0U1RQG5 324 aaPredicted RBP17.37■□□□□ 0.37
MSH6-214ENST00000616033 PKD2Q13563 968 aa17.37■□□□□ 0.37
MSH6-214ENST00000616033 DENND4BO75064 1496 aaPredicted RBP17.36■□□□□ 0.37
MSH6-214ENST00000616033 RGL3Q3MIN7 710 aa17.35■□□□□ 0.37
MSH6-214ENST00000616033 C20orf194Q5TEA3 1177 aa17.34■□□□□ 0.37
MSH6-214ENST00000616033 DCAF11Q8TEB1 546 aa17.33■□□□□ 0.36
MSH6-214ENST00000616033 DHX29Q7Z478 1369 aaKnown RBP17.33■□□□□ 0.36
MSH6-214ENST00000616033 FRAT2O75474 233 aaPredicted RBP17.32■□□□□ 0.36
MSH6-214ENST00000616033 RNF123Q5XPI4 1314 aa17.32■□□□□ 0.36
MSH6-214ENST00000616033 GRIN2BQ13224 1484 aa17.31■□□□□ 0.36
MSH6-214ENST00000616033 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
MSH6-214ENST00000616033 ANKRD30BQ9BXX2 1392 aa17.31■□□□□ 0.36
MSH6-214ENST00000616033 CUL7Q14999 1698 aa17.3■□□□□ 0.36
MSH6-214ENST00000616033 USP35Q9P2H5 1018 aa17.3■□□□□ 0.36
MSH6-214ENST00000616033 ABCA5Q8WWZ7 1642 aa17.29■□□□□ 0.36
MSH6-214ENST00000616033 DDRGK1Q96HY6 314 aa17.29■□□□□ 0.36
MSH6-214ENST00000616033 ZMYND15Q9H091 742 aa17.29■□□□□ 0.36
MSH6-214ENST00000616033 TARBP1Q13395 1621 aaKnown RBP17.29■□□□□ 0.36
MSH6-214ENST00000616033 JPH4Q96JJ6 628 aa17.28■□□□□ 0.36
MSH6-214ENST00000616033 MYBBP1AQ9BQG0 1328 aaKnown RBP17.26■□□□□ 0.35
MSH6-214ENST00000616033 SLKQ9H2G2 1235 aaPredicted RBP17.25■□□□□ 0.35
MSH6-214ENST00000616033 IFT140Q96RY7 1462 aa17.25■□□□□ 0.35
MSH6-214ENST00000616033 CDK13Q14004 1512 aaKnown RBP17.24■□□□□ 0.35
MSH6-214ENST00000616033 SPRYD3Q8NCJ5 442 aa17.23■□□□□ 0.35
MSH6-214ENST00000616033 RPRD2Q5VT52 1461 aaKnown RBP17.23■□□□□ 0.35
MSH6-214ENST00000616033 CFDP1Q9UEE9 299 aaPredicted RBP17.23■□□□□ 0.35
MSH6-214ENST00000616033 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
MSH6-214ENST00000616033 SPATA31E1Q6ZUB1 1445 aa17.23■□□□□ 0.35
MSH6-214ENST00000616033 SUPT6HQ7KZ85 1726 aaKnown RBP17.22■□□□□ 0.35
MSH6-214ENST00000616033 MAGI3Q5TCQ9 1506 aa17.22■□□□□ 0.35
MSH6-214ENST00000616033 KIF15Q9NS87 1388 aa17.22■□□□□ 0.35
MSH6-214ENST00000616033 MS4A1P11836 297 aa17.21■□□□□ 0.35
MSH6-214ENST00000616033 WASHC2CQ9Y4E1 1318 aa17.2■□□□□ 0.34
MSH6-214ENST00000616033 CTTNBP2Q8WZ74 1663 aa17.2■□□□□ 0.34
MSH6-214ENST00000616033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.341e-10■■■□□ 15.6
MSH6-214ENST00000616033 NLRP13Q86W25 1043 aa17.19■□□□□ 0.34
MSH6-214ENST00000616033 GLIPR1L2Q4G1C9 344 aa17.18■□□□□ 0.34
MSH6-214ENST00000616033 RALBP1Q15311 655 aa17.18■□□□□ 0.34
MSH6-214ENST00000616033 TEX14Q8IWB6 1497 aa17.17■□□□□ 0.34
MSH6-214ENST00000616033 NAP1L5Q96NT1 182 aaPredicted RBP17.17■□□□□ 0.34
MSH6-214ENST00000616033 IQGAP2Q13576 1575 aa17.16■□□□□ 0.34
MSH6-214ENST00000616033 NBPF1Q3BBV0 1214 aa17.16■□□□□ 0.34
MSH6-214ENST00000616033 CCDC146Q8IYE0 955 aa17.16■□□□□ 0.34
MSH6-214ENST00000616033 EHBP1L1Q8N3D4 1523 aa17.16■□□□□ 0.34
MSH6-214ENST00000616033 KTN1Q86UP2 1357 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms