RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 ZBTB7CA1YPR0 619 aa17.85■□□□□ 0.45
GGA3-220ENST00000613421 U2SURPO15042 1029 aaKnown RBP17.85■□□□□ 0.45
GGA3-220ENST00000613421 HNRNPMP52272 730 aaKnown RBP eCLIP17.85■□□□□ 0.45
GGA3-220ENST00000613421 LAS1LQ9Y4W2 734 aaKnown RBP17.85■□□□□ 0.45
GGA3-220ENST00000613421 MORC1Q86VD1 984 aa17.83■□□□□ 0.45
GGA3-220ENST00000613421 JPH4Q96JJ6 628 aa17.83■□□□□ 0.44
GGA3-220ENST00000613421 MS4A1P11836 297 aa17.82■□□□□ 0.44
GGA3-220ENST00000613421 RSPH4AQ5TD94 716 aa17.82■□□□□ 0.44
GGA3-220ENST00000613421 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
GGA3-220ENST00000613421 RAD54L2Q9Y4B4 1467 aa17.81■□□□□ 0.44
GGA3-220ENST00000613421 GGT6Q6P531 493 aa17.8■□□□□ 0.44
GGA3-220ENST00000613421 PNNQ9H307 717 aaKnown RBP17.8■□□□□ 0.44
GGA3-220ENST00000613421 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
GGA3-220ENST00000613421 RCAN3Q9UKA8 241 aa17.79■□□□□ 0.44
GGA3-220ENST00000613421 ERICH3Q5RHP9 1530 aa17.79■□□□□ 0.44
GGA3-220ENST00000613421 PLEKHG5O94827 1062 aa17.79■□□□□ 0.44
GGA3-220ENST00000613421 SRPK2P78362 688 aaKnown RBP17.79■□□□□ 0.44
GGA3-220ENST00000613421 CHMP4BQ9H444 224 aaKnown RBP17.77■□□□□ 0.44
GGA3-220ENST00000613421 LRRC9Q6ZRR7 1453 aa17.77■□□□□ 0.43
GGA3-220ENST00000613421 FGD6Q6ZV73 1430 aa17.77■□□□□ 0.43
GGA3-220ENST00000613421 GOLGA6L22H0YM25 854 aa17.76■□□□□ 0.43
GGA3-220ENST00000613421 PHLDB1Q86UU1 1377 aa17.76■□□□□ 0.43
GGA3-220ENST00000613421 TSHZ2Q9NRE2 1034 aa17.76■□□□□ 0.43
GGA3-220ENST00000613421 SAFB2Q14151 953 aaKnown RBP eCLIP17.75■□□□□ 0.43
GGA3-220ENST00000613421 EIF3AQ14152 1382 aaKnown RBP17.75■□□□□ 0.43
GGA3-220ENST00000613421 CASC1Q6TDU7 716 aa17.75■□□□□ 0.43
GGA3-220ENST00000613421 CUX1P39880 1505 aa17.74■□□□□ 0.43
GGA3-220ENST00000613421 NLRP13Q86W25 1043 aa17.74■□□□□ 0.43
GGA3-220ENST00000613421 MYOM3Q5VTT5 1437 aa17.73■□□□□ 0.43
GGA3-220ENST00000613421 ARAP1Q96P48 1450 aa17.73■□□□□ 0.43
GGA3-220ENST00000613421 KIF3BO15066 747 aa17.72■□□□□ 0.43
GGA3-220ENST00000613421 SPAG9O60271 1321 aaKnown RBP17.72■□□□□ 0.43
GGA3-220ENST00000613421 KIF15Q9NS87 1388 aa17.71■□□□□ 0.43
GGA3-220ENST00000613421 PRKRIP1Q9H875 184 aaPredicted RBP17.7■□□□□ 0.42
GGA3-220ENST00000613421 CCDC144AA2RUR9 1427 aa17.7■□□□□ 0.42
GGA3-220ENST00000613421 STK26Q9P289 416 aa17.69■□□□□ 0.42
GGA3-220ENST00000613421 CASKIN1Q8WXD9 1431 aa17.69■□□□□ 0.42
GGA3-220ENST00000613421 ST20-MTHFSA0A0A6YYL1 179 aa17.69■□□□□ 0.42
GGA3-220ENST00000613421 CFTRP13569 1480 aa17.69■□□□□ 0.42
GGA3-220ENST00000613421 NCLP19338 710 aaKnown RBP17.68■□□□□ 0.42
GGA3-220ENST00000613421 UACAQ9BZF9 1416 aa17.68■□□□□ 0.42
GGA3-220ENST00000613421 MLECQ14165 292 aa17.68■□□□□ 0.42
GGA3-220ENST00000613421 HDGFP51858 240 aaKnown RBP17.68■□□□□ 0.42
GGA3-220ENST00000613421 RRBP1Q9P2E9 1410 aaKnown RBP17.68■□□□□ 0.42
GGA3-220ENST00000613421 TOP2BQ02880 1626 aa17.67■□□□□ 0.42
GGA3-220ENST00000613421 PDE3BQ13370 1112 aa17.67■□□□□ 0.42
GGA3-220ENST00000613421 TRIM44Q96DX7 344 aaPredicted RBP17.67■□□□□ 0.42
GGA3-220ENST00000613421 HDGFL2Q7Z4V5 671 aaPredicted RBP17.67■□□□□ 0.42
GGA3-220ENST00000613421 MYBBP1AQ9BQG0 1328 aaKnown RBP17.66■□□□□ 0.42
GGA3-220ENST00000613421 USP47Q96K76 1375 aa17.66■□□□□ 0.42
GGA3-220ENST00000613421 TCERG1O14776 1098 aaKnown RBP17.66■□□□□ 0.42
GGA3-220ENST00000613421 PRXQ9BXM0 1461 aa17.65■□□□□ 0.42
GGA3-220ENST00000613421 PTPRGP23470 1445 aa17.65■□□□□ 0.42
GGA3-220ENST00000613421 U2AF1L5P0DN76 240 aaPredicted RBP17.65■□□□□ 0.42
GGA3-220ENST00000613421 U2AF1Q01081 240 aaKnown RBP eCLIP17.65■□□□□ 0.42
GGA3-220ENST00000613421 NCOA2Q15596 1464 aa17.63■□□□□ 0.41
GGA3-220ENST00000613421 FYCO1Q9BQS8 1478 aa17.63■□□□□ 0.41
GGA3-220ENST00000613421 GOLGA2Q08379 1002 aa17.63■□□□□ 0.41
GGA3-220ENST00000613421 ZBED9Q6R2W3 1325 aa17.61■□□□□ 0.41
GGA3-220ENST00000613421 HSP90AB1P08238 724 aaKnown RBP17.61■□□□□ 0.41
GGA3-220ENST00000613421 A0A0G2JS52 829 aa17.6■□□□□ 0.41
GGA3-220ENST00000613421 IPO8O15397 1037 aaKnown RBP17.59■□□□□ 0.41
GGA3-220ENST00000613421 GLIPR1L2Q4G1C9 344 aa17.59■□□□□ 0.41
GGA3-220ENST00000613421 PANK3Q9H999 370 aa17.59■□□□□ 0.41
GGA3-220ENST00000613421 LMOD2Q6P5Q4 547 aa17.59■□□□□ 0.41
GGA3-220ENST00000613421 ZNF644Q9H582 1327 aaPredicted RBP17.58■□□□□ 0.41
GGA3-220ENST00000613421 SOX12O15370 315 aa17.58■□□□□ 0.4
GGA3-220ENST00000613421 HMGXB3Q12766 1538 aa17.58■□□□□ 0.4
GGA3-220ENST00000613421 AQRO60306 1485 aaKnown RBP eCLIP17.57■□□□□ 0.41e-7■■■■□ 25.8
GGA3-220ENST00000613421 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
GGA3-220ENST00000613421 HSCBQ8IWL3 235 aa17.57■□□□□ 0.4
GGA3-220ENST00000613421 CCDC146Q8IYE0 955 aa17.57■□□□□ 0.4
GGA3-220ENST00000613421 WASHC2CQ9Y4E1 1318 aa17.56■□□□□ 0.4
GGA3-220ENST00000613421 RWDD1Q9H446 243 aaPredicted RBP17.55■□□□□ 0.4
GGA3-220ENST00000613421 EFCAB5A4FU69 1503 aa17.55■□□□□ 0.4
GGA3-220ENST00000613421 CCDC7Q96M83 1385 aa17.55■□□□□ 0.4
GGA3-220ENST00000613421 DEKP35659 375 aaKnown RBP17.54■□□□□ 0.4
GGA3-220ENST00000613421 CALD1Q05682 793 aaKnown RBP17.54■□□□□ 0.4
GGA3-220ENST00000613421 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
GGA3-220ENST00000613421 TERF2IPQ9NYB0 399 aa17.53■□□□□ 0.4
GGA3-220ENST00000613421 ITPRIPQ8IWB1 547 aa17.53■□□□□ 0.4
GGA3-220ENST00000613421 OS9Q13438 667 aaPredicted RBP17.52■□□□□ 0.4
GGA3-220ENST00000613421 KIF7Q2M1P5 1343 aa17.51■□□□□ 0.39
GGA3-220ENST00000613421 CENPJQ9HC77 1338 aaPredicted RBP17.51■□□□□ 0.39
GGA3-220ENST00000613421 PMFBP1Q8TBY8 1022 aa17.51■□□□□ 0.39
GGA3-220ENST00000613421 RTF1Q92541 710 aaKnown RBP17.51■□□□□ 0.39
GGA3-220ENST00000613421 TRAK1Q9UPV9 953 aa17.51■□□□□ 0.39
GGA3-220ENST00000613421 IPO9Q96P70 1041 aaKnown RBP17.51■□□□□ 0.39
GGA3-220ENST00000613421 CNTLNQ9NXG0 1405 aa17.51■□□□□ 0.39
GGA3-220ENST00000613421 NUTM2DQ5VT03 806 aaPredicted RBP17.51■□□□□ 0.39
GGA3-220ENST00000613421 TIAM1Q13009 1591 aa17.5■□□□□ 0.39
GGA3-220ENST00000613421 GRIN2BQ13224 1484 aa17.5■□□□□ 0.39
GGA3-220ENST00000613421 CFAP44Q96MT7 982 aa17.49■□□□□ 0.39
GGA3-220ENST00000613421 ANKRD50Q9ULJ7 1429 aa17.49■□□□□ 0.39
GGA3-220ENST00000613421 PTMAP06454 111 aaKnown RBP17.48■□□□□ 0.39
GGA3-220ENST00000613421 SMC4Q9NTJ3 1288 aa17.48■□□□□ 0.39
GGA3-220ENST00000613421 SPRYD3Q8NCJ5 442 aa17.48■□□□□ 0.39
GGA3-220ENST00000613421 RRP1P56182 461 aaKnown RBP17.47■□□□□ 0.39
GGA3-220ENST00000613421 RTN4Q9NQC3 1192 aaKnown RBP17.47■□□□□ 0.39
GGA3-220ENST00000613421 TOPBP1Q92547 1522 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms