RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 FANCAO15360 1455 aa8.99□□□□□ -0.97
CKAP4-203ENST00000553039 UGGT2Q9NYU1 1516 aa8.99□□□□□ -0.97
CKAP4-203ENST00000553039 DENND4BO75064 1496 aaPredicted RBP8.98□□□□□ -0.97
CKAP4-203ENST00000553039 UHRF1BP1Q6BDS2 1440 aa8.97□□□□□ -0.97
CKAP4-203ENST00000553039 GOLGA3Q08378 1498 aa8.97□□□□□ -0.97
CKAP4-203ENST00000553039 HSPA1LP34931 641 aa8.96□□□□□ -0.98
CKAP4-203ENST00000553039 RIMS1Q86UR5 1692 aaKnown RBP8.95□□□□□ -0.98
CKAP4-203ENST00000553039 FHOD3Q2V2M9 1422 aa8.95□□□□□ -0.98
CKAP4-203ENST00000553039 ATXN8OSP0DMR3 200 aa8.94□□□□□ -0.98
CKAP4-203ENST00000553039 PIP4K2BP78356 416 aa8.94□□□□□ -0.98
CKAP4-203ENST00000553039 ATP10BO94823 1461 aa8.94□□□□□ -0.98
CKAP4-203ENST00000553039 MAGI2Q86UL8 1455 aa8.94□□□□□ -0.98
CKAP4-203ENST00000553039 RAPGEF2Q9Y4G8 1499 aa8.94□□□□□ -0.98
CKAP4-203ENST00000553039 SETD1BQ9UPS6 1966 aaKnown RBP8.93□□□□□ -0.98
CKAP4-203ENST00000553039 PKD2Q13563 968 aa8.93□□□□□ -0.98
CKAP4-203ENST00000553039 MYT1LQ9UL68 1186 aa8.93□□□□□ -0.98
CKAP4-203ENST00000553039 P3H3Q8IVL6 736 aa8.92□□□□□ -0.98
CKAP4-203ENST00000553039 KIAA0556O60303 1618 aa8.91□□□□□ -0.98
CKAP4-203ENST00000553039 LTBP4Q8N2S1 1624 aa8.91□□□□□ -0.98
CKAP4-203ENST00000553039 ABCA8O94911 1581 aa8.9□□□□□ -0.98
CKAP4-203ENST00000553039 ATP10AO60312 1499 aa8.9□□□□□ -0.98
CKAP4-203ENST00000553039 TRAPPC8Q9Y2L5 1435 aa8.89□□□□□ -0.99
CKAP4-203ENST00000553039 ZNF335Q9H4Z2 1342 aaPredicted RBP8.89□□□□□ -0.99
CKAP4-203ENST00000553039 NCKAP5LQ9HCH0 1330 aa8.89□□□□□ -0.99
CKAP4-203ENST00000553039 EFCAB2Q5VUJ9 269 aa8.89□□□□□ -0.99
CKAP4-203ENST00000553039 FKBP8Q14318 412 aa8.88□□□□□ -0.99
CKAP4-203ENST00000553039 ABCA9Q8IUA7 1624 aa8.87□□□□□ -0.99
CKAP4-203ENST00000553039 STRCQ7RTU9 1775 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 EFCAB5A4FU69 1503 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 ZFYVE16Q7Z3T8 1539 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 ARHGEF40Q8TER5 1519 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 MSH5O43196 834 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 MAPK8IP2Q13387 824 aaPredicted RBP8.86□□□□□ -0.99
CKAP4-203ENST00000553039 SCAPERQ9BY12 1400 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 TTC37Q6PGP7 1564 aa8.86□□□□□ -0.99
CKAP4-203ENST00000553039 PREX1Q8TCU6 1659 aa8.85□□□□□ -0.99
CKAP4-203ENST00000553039 NCOA1Q15788 1441 aa8.85□□□□□ -0.99
CKAP4-203ENST00000553039 SLC4A2P04920 1241 aa8.84□□□□□ -0.99
CKAP4-203ENST00000553039 C9orf84Q5VXU9 1444 aa8.84□□□□□ -0.99
CKAP4-203ENST00000553039 ARHGEF12Q9NZN5 1544 aa8.84□□□□□ -0.99
CKAP4-203ENST00000553039 FRMPD1Q5SYB0 1578 aa8.82□□□□□ -1
CKAP4-203ENST00000553039 AFAP1Q8N556 730 aa8.82□□□□□ -1
CKAP4-203ENST00000553039 MED1Q15648 1581 aaPredicted RBP8.82□□□□□ -1
CKAP4-203ENST00000553039 MYCNP04198 464 aaPredicted RBP8.8□□□□□ -1
CKAP4-203ENST00000553039 HOXD11P31277 338 aaPredicted RBP8.8□□□□□ -1
CKAP4-203ENST00000553039 RGS17Q9UGC6 210 aaPredicted RBP8.8□□□□□ -1
CKAP4-203ENST00000553039 CDK11AQ9UQ88 783 aaPredicted RBP8.8□□□□□ -1
CKAP4-203ENST00000553039 ZMYM4Q5VZL5 1548 aa8.8□□□□□ -1
CKAP4-203ENST00000553039 PTPRKQ15262 1439 aa8.8□□□□□ -1
CKAP4-203ENST00000553039 FER1L4A9Z1Z3 1794 aa8.79□□□□□ -1
CKAP4-203ENST00000553039 PLCH2O75038 1416 aa8.79□□□□□ -1
CKAP4-203ENST00000553039 CNTLNQ9NXG0 1405 aa8.79□□□□□ -1
CKAP4-203ENST00000553039 ZMYM3Q14202 1370 aa8.78□□□□□ -1
CKAP4-203ENST00000553039 NPATQ14207 1427 aa8.77□□□□□ -1.01
CKAP4-203ENST00000553039 HECW1Q76N89 1606 aa8.76□□□□□ -1.01
CKAP4-203ENST00000553039 ANKLE2Q86XL3 938 aa8.76□□□□□ -1.01
CKAP4-203ENST00000553039 CFAP74Q9C0B2 1584 aa8.76□□□□□ -1.01
CKAP4-203ENST00000553039 RICTORQ6R327 1708 aa8.76□□□□□ -1.01
CKAP4-203ENST00000553039 POTEAQ6S8J7 498 aa8.75□□□□□ -1.01
CKAP4-203ENST00000553039 CAMSAP1Q5T5Y3 1602 aa8.75□□□□□ -1.01
CKAP4-203ENST00000553039 RANGAP1P46060 587 aaPredicted RBP8.73□□□□□ -1.01
CKAP4-203ENST00000553039 ATP1B4Q9UN42 357 aaPredicted RBP8.73□□□□□ -1.01
CKAP4-203ENST00000553039 PLA2R1Q13018 1463 aa8.72□□□□□ -1.01
CKAP4-203ENST00000553039 THEMISQ8N1K5 641 aaPredicted RBP8.72□□□□□ -1.01
CKAP4-203ENST00000553039 ZNF518AQ6AHZ1 1483 aa8.71□□□□□ -1.01
CKAP4-203ENST00000553039 CPS1P31327 1500 aa8.71□□□□□ -1.01
CKAP4-203ENST00000553039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.71□□□□□ -1.01
CKAP4-203ENST00000553039 UPF1Q92900 1129 aaKnown RBP eCLIP8.71□□□□□ -1.02
CKAP4-203ENST00000553039 NUP153P49790 1475 aaKnown RBP8.7□□□□□ -1.02
CKAP4-203ENST00000553039 SHANK2Q9UPX8 1470 aa8.7□□□□□ -1.02
CKAP4-203ENST00000553039 AGLP35573 1532 aa8.7□□□□□ -1.02
CKAP4-203ENST00000553039 GGT6Q6P531 493 aa8.69□□□□□ -1.02
CKAP4-203ENST00000553039 TCOF1Q13428 1488 aaKnown RBP8.69□□□□□ -1.02
CKAP4-203ENST00000553039 RAPGEF6Q8TEU7 1601 aa8.69□□□□□ -1.02
CKAP4-203ENST00000553039 SIGLEC1Q9BZZ2 1709 aa8.68□□□□□ -1.02
CKAP4-203ENST00000553039 MLH3Q9UHC1 1453 aa8.68□□□□□ -1.02
CKAP4-203ENST00000553039 PRXQ9BXM0 1461 aa8.67□□□□□ -1.02
CKAP4-203ENST00000553039 C3P01024 1663 aa8.65□□□□□ -1.02
CKAP4-203ENST00000553039 ZNF772Q68DY9 489 aaPredicted RBP8.65□□□□□ -1.02
CKAP4-203ENST00000553039 CTTNBP2Q8WZ74 1663 aa8.65□□□□□ -1.03
CKAP4-203ENST00000553039 REREQ9P2R6 1566 aa8.64□□□□□ -1.03
CKAP4-203ENST00000553039 SPAG9O60271 1321 aaKnown RBP8.63□□□□□ -1.03
CKAP4-203ENST00000553039 RXRBP28702 533 aa8.62□□□□□ -1.03
CKAP4-203ENST00000553039 TRIM52Q96A61 297 aa8.61□□□□□ -1.03
CKAP4-203ENST00000553039 A2ML1A8K2U0 1454 aa8.61□□□□□ -1.03
CKAP4-203ENST00000553039 FAM135BQ49AJ0 1406 aa8.61□□□□□ -1.03
CKAP4-203ENST00000553039 ZRANB1Q9UGI0 708 aa8.6□□□□□ -1.03
CKAP4-203ENST00000553039 ZNF777Q9ULD5 760 aaPredicted RBP8.6□□□□□ -1.03
CKAP4-203ENST00000553039 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.6□□□□□ -1.03
CKAP4-203ENST00000553039 ARHGAP5Q13017 1502 aa8.59□□□□□ -1.03
CKAP4-203ENST00000553039 MEX3CQ5U5Q3 659 aaKnown RBP8.59□□□□□ -1.03
CKAP4-203ENST00000553039 FBXO31Q5XUX0 539 aaPredicted RBP8.59□□□□□ -1.03
CKAP4-203ENST00000553039 NPHP4O75161 1426 aaPredicted RBP8.59□□□□□ -1.03
CKAP4-203ENST00000553039 CLIP1P30622 1438 aa8.59□□□□□ -1.03
CKAP4-203ENST00000553039 KDM5CP41229 1560 aa8.59□□□□□ -1.03
CKAP4-203ENST00000553039 DIP2CQ9Y2E4 1556 aa8.59□□□□□ -1.03
CKAP4-203ENST00000553039 CEP170BQ9Y4F5 1589 aaPredicted RBP8.58□□□□□ -1.04
CKAP4-203ENST00000553039 HNRNPMP52272 730 aaKnown RBP eCLIP8.58□□□□□ -1.04
CKAP4-203ENST00000553039 TNRQ92752 1358 aa8.58□□□□□ -1.04
CKAP4-203ENST00000553039 PLCB2Q00722 1185 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms