RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 CHIC1Q5VXU3 224 aa13.14□□□□□ -0.31
CKAP4-203ENST00000553039 NISCHQ9Y2I1 1504 aa13.09□□□□□ -0.31
CKAP4-203ENST00000553039 AEBP2Q6ZN18 517 aaPredicted RBP12.75□□□□□ -0.37
CKAP4-203ENST00000553039 ABCC9O60706 1549 aa12.52□□□□□ -0.41
CKAP4-203ENST00000553039 DNAJC5BQ9UF47 199 aa12.31□□□□□ -0.44
CKAP4-203ENST00000553039 CCDC180Q9P1Z9 1646 aa11.83□□□□□ -0.52
CKAP4-203ENST00000553039 DNAJC5Q9H3Z4 198 aa11.8□□□□□ -0.52
CKAP4-203ENST00000553039 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
CKAP4-203ENST00000553039 RB1CC1Q8TDY2 1594 aa11.65□□□□□ -0.54
CKAP4-203ENST00000553039 PHF23Q9BUL5 403 aaPredicted RBP11.62□□□□□ -0.55
CKAP4-203ENST00000553039 DCAF8L2P0C7V8 631 aa11.58□□□□□ -0.56
CKAP4-203ENST00000553039 NACADO15069 1562 aa11.47□□□□□ -0.57
CKAP4-203ENST00000553039 CECR2Q9BXF3 1484 aa11.37□□□□□ -0.59
CKAP4-203ENST00000553039 BICRAQ9NZM4 1560 aa11.22□□□□□ -0.61
CKAP4-203ENST00000553039 CC2D2AQ9P2K1 1620 aa11.2□□□□□ -0.62
CKAP4-203ENST00000553039 MYO15BQ96JP2 1530 aa11.14□□□□□ -0.63
CKAP4-203ENST00000553039 SHROOM4Q9ULL8 1493 aa11.13□□□□□ -0.63
CKAP4-203ENST00000553039 UNC13AQ9UPW8 1703 aa11.11□□□□□ -0.63
CKAP4-203ENST00000553039 EIF4G1Q04637 1599 aaKnown RBP11.05□□□□□ -0.64
CKAP4-203ENST00000553039 TRIM41Q8WV44 630 aa11.04□□□□□ -0.64
CKAP4-203ENST00000553039 CUX2O14529 1486 aa11.03□□□□□ -0.64
CKAP4-203ENST00000553039 PLPPR3Q6T4P5 718 aa10.95□□□□□ -0.66
CKAP4-203ENST00000553039 ERCC6Q03468 1493 aa10.91□□□□□ -0.66
CKAP4-203ENST00000553039 SCRIBQ14160 1630 aa10.86□□□□□ -0.67
CKAP4-203ENST00000553039 DCAF1Q9Y4B6 1507 aa10.78□□□□□ -0.68
CKAP4-203ENST00000553039 SENP3Q9H4L4 574 aaPredicted RBP10.74□□□□□ -0.69
CKAP4-203ENST00000553039 ZCCHC6Q5VYS8 1495 aaKnown RBP10.67□□□□□ -0.7
CKAP4-203ENST00000553039 OSCARQ8IYS5 282 aa10.66□□□□□ -0.7
CKAP4-203ENST00000553039 NCAPD3P42695 1498 aa10.66□□□□□ -0.7
CKAP4-203ENST00000553039 NESP48681 1621 aa10.54□□□□□ -0.72
CKAP4-203ENST00000553039 PDS5BQ9NTI5 1447 aa10.52□□□□□ -0.73
CKAP4-203ENST00000553039 ATAD2BQ9ULI0 1458 aa10.5□□□□□ -0.73
CKAP4-203ENST00000553039 TRHP20396 242 aaPredicted RBP10.5□□□□□ -0.73
CKAP4-203ENST00000553039 SMARCA2P51531 1590 aa10.43□□□□□ -0.74
CKAP4-203ENST00000553039 THOC2Q8NI27 1593 aaKnown RBP10.42□□□□□ -0.74
CKAP4-203ENST00000553039 CYB5RLQ6IPT4 315 aa10.41□□□□□ -0.74
CKAP4-203ENST00000553039 LAMC3Q9Y6N6 1575 aa10.4□□□□□ -0.74
CKAP4-203ENST00000553039 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
CKAP4-203ENST00000553039 BAZ1BQ9UIG0 1483 aaKnown RBP10.36□□□□□ -0.75
CKAP4-203ENST00000553039 CADPSQ9ULU8 1353 aa10.36□□□□□ -0.75
CKAP4-203ENST00000553039 MRC2Q9UBG0 1479 aa10.34□□□□□ -0.75
CKAP4-203ENST00000553039 BAZ1AQ9NRL2 1556 aaPredicted RBP10.31□□□□□ -0.76
CKAP4-203ENST00000553039 EHMT2Q96KQ7 1210 aa10.26□□□□□ -0.77
CKAP4-203ENST00000553039 WDR62O43379 1518 aa10.26□□□□□ -0.77
CKAP4-203ENST00000553039 KIF21AQ7Z4S6 1674 aa10.24□□□□□ -0.77
CKAP4-203ENST00000553039 RIMBP3CA6NJZ7 1639 aa10.23□□□□□ -0.77
CKAP4-203ENST00000553039 RIMBP3BA6NNM3 1639 aa10.23□□□□□ -0.77
CKAP4-203ENST00000553039 SMARCA4P51532 1647 aa10.23□□□□□ -0.77
CKAP4-203ENST00000553039 RIMBP3Q9UFD9 1639 aa10.23□□□□□ -0.77
CKAP4-203ENST00000553039 KCNA4P22459 653 aa10.23□□□□□ -0.77
CKAP4-203ENST00000553039 ARHGEF11O15085 1522 aa10.22□□□□□ -0.77
CKAP4-203ENST00000553039 CEP164Q9UPV0 1460 aa10.19□□□□□ -0.78
CKAP4-203ENST00000553039 ADRA2BP18089 450 aa10.18□□□□□ -0.78
CKAP4-203ENST00000553039 PEG3Q9GZU2 1588 aa10.16□□□□□ -0.78
CKAP4-203ENST00000553039 ILDR1Q86SU0 546 aaPredicted RBP10.15□□□□□ -0.78
CKAP4-203ENST00000553039 FANCD2Q9BXW9 1451 aa10.15□□□□□ -0.78
CKAP4-203ENST00000553039 FBLN2P98095 1184 aa10.14□□□□□ -0.79
CKAP4-203ENST00000553039 RSF1Q96T23 1441 aaPredicted RBP10.07□□□□□ -0.8
CKAP4-203ENST00000553039 ARAP1Q96P48 1450 aa10.06□□□□□ -0.8
CKAP4-203ENST00000553039 IFT140Q96RY7 1462 aa10.05□□□□□ -0.8
CKAP4-203ENST00000553039 CFTRP13569 1480 aa10.04□□□□□ -0.8
CKAP4-203ENST00000553039 MROH2BQ7Z745 1585 aa10.04□□□□□ -0.8
CKAP4-203ENST00000553039 URB2Q14146 1524 aaKnown RBP10.02□□□□□ -0.8
CKAP4-203ENST00000553039 ZNF608Q9ULD9 1512 aaPredicted RBP10.02□□□□□ -0.81
CKAP4-203ENST00000553039 PPP6R1Q9UPN7 881 aa10□□□□□ -0.81
CKAP4-203ENST00000553039 CHMP7Q8WUX9 453 aaPredicted RBP9.99□□□□□ -0.81
CKAP4-203ENST00000553039 AQRO60306 1485 aaKnown RBP eCLIP9.94□□□□□ -0.82
CKAP4-203ENST00000553039 CSRNP3Q8WYN3 585 aa9.94□□□□□ -0.82
CKAP4-203ENST00000553039 ABCC8Q09428 1581 aa9.93□□□□□ -0.82
CKAP4-203ENST00000553039 KDM4FA0A1W2PPD8 638 aa9.87□□□□□ -0.83
CKAP4-203ENST00000553039 TOPBP1Q92547 1522 aa9.87□□□□□ -0.83
CKAP4-203ENST00000553039 FOXD1Q16676 465 aa9.86□□□□□ -0.83
CKAP4-203ENST00000553039 SLC4A1APQ9BWU0 796 aaKnown RBP9.86□□□□□ -0.83
CKAP4-203ENST00000553039 TDRD9Q8NDG6 1382 aaKnown RBP9.84□□□□□ -0.83
CKAP4-203ENST00000553039 GAPVD1Q14C86 1478 aa9.84□□□□□ -0.83
CKAP4-203ENST00000553039 NPM1P06748 294 aaKnown RBP eCLIP9.83□□□□□ -0.84
CKAP4-203ENST00000553039 WIZO95785 1651 aa9.82□□□□□ -0.84
CKAP4-203ENST00000553039 EIF4G3O43432 1585 aaKnown RBP9.81□□□□□ -0.84
CKAP4-203ENST00000553039 FAM69CQ0P6D2 419 aa9.81□□□□□ -0.84
CKAP4-203ENST00000553039 SOGA1O94964 1423 aa9.81□□□□□ -0.84
CKAP4-203ENST00000553039 CHD1O14646 1710 aa9.79□□□□□ -0.84
CKAP4-203ENST00000553039 SYNJ1O43426 1573 aa9.79□□□□□ -0.84
CKAP4-203ENST00000553039 FBXO41Q8TF61 875 aa9.78□□□□□ -0.84
CKAP4-203ENST00000553039 CLASP1Q7Z460 1538 aa9.76□□□□□ -0.85
CKAP4-203ENST00000553039 SNAPC4Q5SXM2 1469 aa9.74□□□□□ -0.85
CKAP4-203ENST00000553039 MAGI1Q96QZ7 1491 aaPredicted RBP9.74□□□□□ -0.85
CKAP4-203ENST00000553039 DNMBPQ6XZF7 1577 aa9.74□□□□□ -0.85
CKAP4-203ENST00000553039 SYNJ2O15056 1496 aa9.72□□□□□ -0.85
CKAP4-203ENST00000553039 GRIN2BQ13224 1484 aa9.72□□□□□ -0.85
CKAP4-203ENST00000553039 RAD54L2Q9Y4B4 1467 aa9.72□□□□□ -0.85
CKAP4-203ENST00000553039 TARBP1Q13395 1621 aaKnown RBP9.72□□□□□ -0.85
CKAP4-203ENST00000553039 POLA1P09884 1462 aaPredicted RBP9.72□□□□□ -0.85
CKAP4-203ENST00000553039 TOP2AP11388 1531 aaKnown RBP9.72□□□□□ -0.85
CKAP4-203ENST00000553039 PPP4R3CPQ6ZMV5 832 aa9.71□□□□□ -0.86
CKAP4-203ENST00000553039 CCDC88BA6NC98 1476 aa9.71□□□□□ -0.86
CKAP4-203ENST00000553039 NCBP3Q53F19 620 aaKnown RBP9.67□□□□□ -0.86
CKAP4-203ENST00000553039 ABCC10Q5T3U5 1492 aa9.65□□□□□ -0.87
CKAP4-203ENST00000553039 JPH4Q96JJ6 628 aa9.64□□□□□ -0.87
CKAP4-203ENST00000553039 WDR97A6NE52 1622 aa9.64□□□□□ -0.87
CKAP4-203ENST00000553039 SOCS7O14512 581 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms