RNA–Protein interactions for RNA: ENST00000528516.5

LTBP3-210, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 1 (best)

Gene LTBP3, Length 3,935 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-210ENST00000528516 PLPPR3Q6T4P5 718 aa23.72■■□□□ 1.39
LTBP3-210ENST00000528516 BRPF3Q9ULD4 1205 aa23.7■■□□□ 1.39
LTBP3-210ENST00000528516 SLC24A1O60721 1099 aa23.7■■□□□ 1.38
LTBP3-210ENST00000528516 ZBED9Q6R2W3 1325 aa23.7■■□□□ 1.38
LTBP3-210ENST00000528516 PPM1GO15355 546 aaPredicted RBP23.68■■□□□ 1.38
LTBP3-210ENST00000528516 WASHC2AQ641Q2 1341 aa23.68■■□□□ 1.38
LTBP3-210ENST00000528516 CC2D1BQ5T0F9 858 aaKnown RBP23.67■■□□□ 1.38
LTBP3-210ENST00000528516 PLEKHD1A6NEE1 506 aa23.65■■□□□ 1.38
LTBP3-210ENST00000528516 PRKRIP1Q9H875 184 aaPredicted RBP23.65■■□□□ 1.38
LTBP3-210ENST00000528516 UBE2Q2Q8WVN8 375 aa23.65■■□□□ 1.38
LTBP3-210ENST00000528516 PHLDB1Q86UU1 1377 aa23.65■■□□□ 1.38
LTBP3-210ENST00000528516 DCAF11Q8TEB1 546 aa23.64■■□□□ 1.37
LTBP3-210ENST00000528516 L3MBTL2Q969R5 705 aa23.64■■□□□ 1.37
LTBP3-210ENST00000528516 GRIN2BQ13224 1484 aa23.64■■□□□ 1.37
LTBP3-210ENST00000528516 NEUROD2Q15784 382 aa23.63■■□□□ 1.37
LTBP3-210ENST00000528516 AKNAQ7Z591 1439 aa23.62■■□□□ 1.37
LTBP3-210ENST00000528516 FMN1Q68DA7 1419 aa23.61■■□□□ 1.37
LTBP3-210ENST00000528516 IFT140Q96RY7 1462 aa23.61■■□□□ 1.37
LTBP3-210ENST00000528516 TNNT2P45379 298 aaPredicted RBP23.59■■□□□ 1.37
LTBP3-210ENST00000528516 USP35Q9P2H5 1018 aa23.59■■□□□ 1.37
LTBP3-210ENST00000528516 WDR43Q15061 677 aaKnown RBP eCLIP23.58■■□□□ 1.37
LTBP3-210ENST00000528516 MPHOSPH9Q99550 1183 aa23.58■■□□□ 1.36
LTBP3-210ENST00000528516 NUDCQ9Y266 331 aa23.58■■□□□ 1.36
LTBP3-210ENST00000528516 SNAPC4Q5SXM2 1469 aa23.57■■□□□ 1.36
LTBP3-210ENST00000528516 CUL7Q14999 1698 aa23.56■■□□□ 1.36
LTBP3-210ENST00000528516 PKD2Q13563 968 aa23.54■■□□□ 1.36
LTBP3-210ENST00000528516 JPH4Q96JJ6 628 aa23.53■■□□□ 1.36
LTBP3-210ENST00000528516 PDE4AP27815 886 aa23.53■■□□□ 1.36
LTBP3-210ENST00000528516 GSE1Q14687 1217 aa23.53■■□□□ 1.36
LTBP3-210ENST00000528516 LRRC9Q6ZRR7 1453 aa23.51■■□□□ 1.35
LTBP3-210ENST00000528516 SLC4A3P48751 1232 aa23.5■■□□□ 1.35
LTBP3-210ENST00000528516 TARBP1Q13395 1621 aaKnown RBP23.48■■□□□ 1.35
LTBP3-210ENST00000528516 RGS3P49796 1198 aa23.48■■□□□ 1.35
LTBP3-210ENST00000528516 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
LTBP3-210ENST00000528516 TCERG1O14776 1098 aaKnown RBP23.48■■□□□ 1.35
LTBP3-210ENST00000528516 PCF11O94913 1555 aaKnown RBP23.47■■□□□ 1.35
LTBP3-210ENST00000528516 DDRGK1Q96HY6 314 aa23.47■■□□□ 1.35
LTBP3-210ENST00000528516 CASKIN1Q8WXD9 1431 aa23.46■■□□□ 1.35
LTBP3-210ENST00000528516 CNTLNQ9NXG0 1405 aa23.46■■□□□ 1.35
LTBP3-210ENST00000528516 TIAM1Q13009 1591 aa23.45■■□□□ 1.34
LTBP3-210ENST00000528516 PLEKHG5O94827 1062 aa23.44■■□□□ 1.34
LTBP3-210ENST00000528516 EXOC6Q8TAG9 804 aa23.44■■□□□ 1.34
LTBP3-210ENST00000528516 FRAT1Q92837 279 aaPredicted RBP23.41■■□□□ 1.34
LTBP3-210ENST00000528516 C11orf95C9JLR9 678 aaPredicted RBP23.41■■□□□ 1.34
LTBP3-210ENST00000528516 EFCAB5A4FU69 1503 aa23.4■■□□□ 1.34
LTBP3-210ENST00000528516 CCDC18Q5T9S5 1454 aa23.4■■□□□ 1.34
LTBP3-210ENST00000528516 WDR62O43379 1518 aa23.39■■□□□ 1.34
LTBP3-210ENST00000528516 NFKBIBQ15653 356 aa23.39■■□□□ 1.33
LTBP3-210ENST00000528516 GLIPR1L2Q4G1C9 344 aa23.39■■□□□ 1.33
LTBP3-210ENST00000528516 STAG3Q9UJ98 1225 aa23.39■■□□□ 1.33
LTBP3-210ENST00000528516 ZNF644Q9H582 1327 aaPredicted RBP23.38■■□□□ 1.33
LTBP3-210ENST00000528516 FYCO1Q9BQS8 1478 aa23.37■■□□□ 1.33
LTBP3-210ENST00000528516 CCDC7Q96M83 1385 aa23.36■■□□□ 1.33
LTBP3-210ENST00000528516 KNSTRNQ9Y448 316 aa23.35■■□□□ 1.33
LTBP3-210ENST00000528516 SMG6Q86US8 1419 aaKnown RBP23.34■■□□□ 1.33
LTBP3-210ENST00000528516 CTTNBP2Q8WZ74 1663 aa23.34■■□□□ 1.33
LTBP3-210ENST00000528516 IQGAP2Q13576 1575 aa23.34■■□□□ 1.33
LTBP3-210ENST00000528516 RSPH6AQ9H0K4 717 aa23.33■■□□□ 1.32
LTBP3-210ENST00000528516 GRIN2AQ12879 1464 aa23.33■■□□□ 1.32
LTBP3-210ENST00000528516 BACH2Q9BYV9 841 aa23.32■■□□□ 1.32
LTBP3-210ENST00000528516 HNRNPMP52272 730 aaKnown RBP eCLIP23.32■■□□□ 1.32
LTBP3-210ENST00000528516 WASHC2CQ9Y4E1 1318 aa23.32■■□□□ 1.32
LTBP3-210ENST00000528516 SAFB2Q14151 953 aaKnown RBP eCLIP23.31■■□□□ 1.32
LTBP3-210ENST00000528516 PBRM1Q86U86 1689 aa23.31■■□□□ 1.32
LTBP3-210ENST00000528516 PKNOX2Q96KN3 472 aa23.3■■□□□ 1.32
LTBP3-210ENST00000528516 UACAQ9BZF9 1416 aa23.3■■□□□ 1.32
LTBP3-210ENST00000528516 SKAP1Q86WV1 359 aa23.3■■□□□ 1.32
LTBP3-210ENST00000528516 EIF4G3O43432 1585 aaKnown RBP23.3■■□□□ 1.32
LTBP3-210ENST00000528516 RRP1P56182 461 aaKnown RBP23.29■■□□□ 1.32
LTBP3-210ENST00000528516 RCAN3Q9UKA8 241 aa23.29■■□□□ 1.32
LTBP3-210ENST00000528516 ADAMTS12P58397 1594 aa23.29■■□□□ 1.32
LTBP3-210ENST00000528516 CARMIL2Q6F5E8 1435 aa23.29■■□□□ 1.32
LTBP3-210ENST00000528516 KIAA0586Q9BVV6 1533 aa23.28■■□□□ 1.32
LTBP3-210ENST00000528516 KIF7Q2M1P5 1343 aa23.28■■□□□ 1.32
LTBP3-210ENST00000528516 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.27■■□□□ 1.32
LTBP3-210ENST00000528516 CDK13Q14004 1512 aaKnown RBP23.26■■□□□ 1.31
LTBP3-210ENST00000528516 NUP155O75694 1391 aa23.26■■□□□ 1.31
LTBP3-210ENST00000528516 ST20-MTHFSA0A0A6YYL1 179 aa23.25■■□□□ 1.31
LTBP3-210ENST00000528516 HSP90AA1P07900 732 aaKnown RBP23.25■■□□□ 1.31
LTBP3-210ENST00000528516 PLIN1O60240 522 aa23.24■■□□□ 1.31
LTBP3-210ENST00000528516 SYNJ2O15056 1496 aa23.24■■□□□ 1.31
LTBP3-210ENST00000528516 NCOA2Q15596 1464 aa23.24■■□□□ 1.31
LTBP3-210ENST00000528516 NPM1P06748 294 aaKnown RBP eCLIP23.23■■□□□ 1.31
LTBP3-210ENST00000528516 FGD6Q6ZV73 1430 aa23.23■■□□□ 1.31
LTBP3-210ENST00000528516 MS4A1P11836 297 aa23.22■■□□□ 1.31
LTBP3-210ENST00000528516 NAP1L5Q96NT1 182 aaPredicted RBP23.22■■□□□ 1.31
LTBP3-210ENST00000528516 VSIG10Q8N0Z9 540 aa23.21■■□□□ 1.31
LTBP3-210ENST00000528516 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
LTBP3-210ENST00000528516 FRAT2O75474 233 aaPredicted RBP23.19■■□□□ 1.3
LTBP3-210ENST00000528516 UPF2Q9HAU5 1272 aaKnown RBP23.17■■□□□ 1.3
LTBP3-210ENST00000528516 THOC2Q8NI27 1593 aaKnown RBP23.16■■□□□ 1.3
LTBP3-210ENST00000528516 MAP3K1Q13233 1512 aa23.16■■□□□ 1.3
LTBP3-210ENST00000528516 PLB1Q6P1J6 1458 aa23.16■■□□□ 1.3
LTBP3-210ENST00000528516 EPRSP07814 1512 aaKnown RBP23.16■■□□□ 1.3
LTBP3-210ENST00000528516 MYOM3Q5VTT5 1437 aa23.15■■□□□ 1.3
LTBP3-210ENST00000528516 SPRYD3Q8NCJ5 442 aa23.14■■□□□ 1.3
LTBP3-210ENST00000528516 NUTM2DQ5VT03 806 aaPredicted RBP23.14■■□□□ 1.29
LTBP3-210ENST00000528516 NBPF8Q3BBV2 869 aa23.14■■□□□ 1.29
LTBP3-210ENST00000528516 CCDC146Q8IYE0 955 aa23.14■■□□□ 1.29
LTBP3-210ENST00000528516 PTPRGP23470 1445 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms