RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 FHOD3Q2V2M9 1422 aa12.84□□□□□ -0.35
VTI1A-207ENST00000489357 KIF13AQ9H1H9 1805 aa12.83□□□□□ -0.36
VTI1A-207ENST00000489357 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
VTI1A-207ENST00000489357 ZCCHC11Q5TAX3 1644 aaKnown RBP12.81□□□□□ -0.36
VTI1A-207ENST00000489357 RAPGEF6Q8TEU7 1601 aa12.81□□□□□ -0.36
VTI1A-207ENST00000489357 ATP10BO94823 1461 aa12.8□□□□□ -0.36
VTI1A-207ENST00000489357 REM2Q8IYK8 340 aaPredicted RBP12.8□□□□□ -0.36
VTI1A-207ENST00000489357 ABCC10Q5T3U5 1492 aa12.79□□□□□ -0.36
VTI1A-207ENST00000489357 RANGAP1P46060 587 aaPredicted RBP12.79□□□□□ -0.36
VTI1A-207ENST00000489357 NUP153P49790 1475 aaKnown RBP12.78□□□□□ -0.36
VTI1A-207ENST00000489357 PPARGC1BQ86YN6 1023 aaKnown RBP12.78□□□□□ -0.36
VTI1A-207ENST00000489357 STAG3Q9UJ98 1225 aa12.78□□□□□ -0.36
VTI1A-207ENST00000489357 FMN1Q68DA7 1419 aa12.78□□□□□ -0.36
VTI1A-207ENST00000489357 ASXL2Q76L83 1435 aa12.78□□□□□ -0.36
VTI1A-207ENST00000489357 DIP2BQ9P265 1576 aa12.77□□□□□ -0.36
VTI1A-207ENST00000489357 GLI2P10070 1586 aa12.76□□□□□ -0.37
VTI1A-207ENST00000489357 FAM69CQ0P6D2 419 aa12.75□□□□□ -0.37
VTI1A-207ENST00000489357 SPDYE1Q8NFV5 336 aaPredicted RBP12.75□□□□□ -0.37
VTI1A-207ENST00000489357 TIAM1Q13009 1591 aa12.73□□□□□ -0.37
VTI1A-207ENST00000489357 RRBP1Q9P2E9 1410 aaKnown RBP12.73□□□□□ -0.37
VTI1A-207ENST00000489357 CFAP43Q8NDM7 1665 aa12.73□□□□□ -0.37
VTI1A-207ENST00000489357 EPRSP07814 1512 aaKnown RBP12.72□□□□□ -0.37
VTI1A-207ENST00000489357 FYCO1Q9BQS8 1478 aa12.72□□□□□ -0.37
VTI1A-207ENST00000489357 WDR7Q9Y4E6 1490 aa12.72□□□□□ -0.37
VTI1A-207ENST00000489357 LRRIQ1Q96JM4 1722 aa12.72□□□□□ -0.37
VTI1A-207ENST00000489357 CASKIN1Q8WXD9 1431 aa12.71□□□□□ -0.37
VTI1A-207ENST00000489357 CCER1Q8TC90 406 aaPredicted RBP12.71□□□□□ -0.37
VTI1A-207ENST00000489357 CLEC11AQ9Y240 323 aa12.69□□□□□ -0.38
VTI1A-207ENST00000489357 HECW1Q76N89 1606 aa12.69□□□□□ -0.38
VTI1A-207ENST00000489357 PPRC1Q5VV67 1664 aaKnown RBP12.68□□□□□ -0.38
VTI1A-207ENST00000489357 MAP3K4Q9Y6R4 1608 aa12.68□□□□□ -0.38
VTI1A-207ENST00000489357 CLSPNQ9HAW4 1339 aa12.67□□□□□ -0.38
VTI1A-207ENST00000489357 VASPP50552 380 aaPredicted RBP12.67□□□□□ -0.38
VTI1A-207ENST00000489357 PCF11O94913 1555 aaKnown RBP12.67□□□□□ -0.38
VTI1A-207ENST00000489357 CDK13Q14004 1512 aaKnown RBP12.66□□□□□ -0.38
VTI1A-207ENST00000489357 LRRC9Q6ZRR7 1453 aa12.65□□□□□ -0.38
VTI1A-207ENST00000489357 TSPOAP1O95153 1857 aa12.65□□□□□ -0.38
VTI1A-207ENST00000489357 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
VTI1A-207ENST00000489357 ABCA9Q8IUA7 1624 aa12.64□□□□□ -0.39
VTI1A-207ENST00000489357 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
VTI1A-207ENST00000489357 ARID3CA6NKF2 412 aa12.64□□□□□ -0.39
VTI1A-207ENST00000489357 CCDC18Q5T9S5 1454 aa12.62□□□□□ -0.39
VTI1A-207ENST00000489357 CCNB3Q8WWL7 1395 aa12.62□□□□□ -0.39
VTI1A-207ENST00000489357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.62□□□□□ -0.39
VTI1A-207ENST00000489357 KCNH8Q96L42 1107 aa12.62□□□□□ -0.39
VTI1A-207ENST00000489357 MAGI3Q5TCQ9 1506 aa12.62□□□□□ -0.39
VTI1A-207ENST00000489357 PRR29P0C7W0 189 aa12.6□□□□□ -0.39
VTI1A-207ENST00000489357 KANK4Q5T7N3 995 aaPredicted RBP12.6□□□□□ -0.39
VTI1A-207ENST00000489357 CD109Q6YHK3 1445 aa12.6□□□□□ -0.39
VTI1A-207ENST00000489357 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.59□□□□□ -0.39
VTI1A-207ENST00000489357 CDK11AQ9UQ88 783 aaPredicted RBP12.59□□□□□ -0.39
VTI1A-207ENST00000489357 TROQ12816 1431 aaPredicted RBP12.59□□□□□ -0.39
VTI1A-207ENST00000489357 KDM6BO15054 1643 aa12.59□□□□□ -0.39
VTI1A-207ENST00000489357 ATP1B4Q9UN42 357 aaPredicted RBP12.57□□□□□ -0.4
VTI1A-207ENST00000489357 MIER1Q8N108 512 aa12.56□□□□□ -0.4
VTI1A-207ENST00000489357 TEX14Q8IWB6 1497 aa12.55□□□□□ -0.4
VTI1A-207ENST00000489357 COL17A1Q9UMD9 1497 aaPredicted RBP12.55□□□□□ -0.4
VTI1A-207ENST00000489357 PLCD3Q8N3E9 789 aa12.55□□□□□ -0.4
VTI1A-207ENST00000489357 TTC37Q6PGP7 1564 aa12.55□□□□□ -0.4
VTI1A-207ENST00000489357 KIF14Q15058 1648 aa12.55□□□□□ -0.4
VTI1A-207ENST00000489357 PHLDB1Q86UU1 1377 aa12.54□□□□□ -0.4
VTI1A-207ENST00000489357 ARAP3Q8WWN8 1544 aa12.53□□□□□ -0.4
VTI1A-207ENST00000489357 PLCH2O75038 1416 aa12.53□□□□□ -0.4
VTI1A-207ENST00000489357 EHBP1L1Q8N3D4 1523 aa12.52□□□□□ -0.4
VTI1A-207ENST00000489357 NEO1Q92859 1461 aa12.52□□□□□ -0.41
VTI1A-207ENST00000489357 CDC42BPBQ9Y5S2 1711 aa12.51□□□□□ -0.41
VTI1A-207ENST00000489357 PLEKHG5O94827 1062 aa12.5□□□□□ -0.41
VTI1A-207ENST00000489357 IFNLR1Q8IU57 520 aaPredicted RBP12.5□□□□□ -0.41
VTI1A-207ENST00000489357 MYO5CQ9NQX4 1742 aa12.5□□□□□ -0.41
VTI1A-207ENST00000489357 CDC42BPAQ5VT25 1732 aa12.49□□□□□ -0.41
VTI1A-207ENST00000489357 SUPT6HQ7KZ85 1726 aaKnown RBP12.49□□□□□ -0.41
VTI1A-207ENST00000489357 CHRDL2Q6WN34 429 aa12.48□□□□□ -0.41
VTI1A-207ENST00000489357 DHX57Q6P158 1386 aaKnown RBP12.47□□□□□ -0.41
VTI1A-207ENST00000489357 GPATCH8Q9UKJ3 1502 aaKnown RBP12.47□□□□□ -0.41
VTI1A-207ENST00000489357 AKNAQ7Z591 1439 aa12.46□□□□□ -0.41
VTI1A-207ENST00000489357 PREX2Q70Z35 1606 aa12.46□□□□□ -0.41
VTI1A-207ENST00000489357 FANCAO15360 1455 aa12.46□□□□□ -0.42
VTI1A-207ENST00000489357 MTUS2Q5JR59 1369 aa12.45□□□□□ -0.42
VTI1A-207ENST00000489357 CFAP74Q9C0B2 1584 aa12.45□□□□□ -0.42
VTI1A-207ENST00000489357 KLHL34Q8N239 644 aa12.45□□□□□ -0.42
VTI1A-207ENST00000489357 FGD6Q6ZV73 1430 aa12.45□□□□□ -0.42
VTI1A-207ENST00000489357 EFCAB2Q5VUJ9 269 aa12.44□□□□□ -0.42
VTI1A-207ENST00000489357 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
VTI1A-207ENST00000489357 RICTORQ6R327 1708 aa12.43□□□□□ -0.42
VTI1A-207ENST00000489357 MYOM3Q5VTT5 1437 aa12.43□□□□□ -0.42
VTI1A-207ENST00000489357 SETD5Q9C0A6 1442 aa12.43□□□□□ -0.42
VTI1A-207ENST00000489357 ACIN1Q9UKV3 1341 aaKnown RBP12.42□□□□□ -0.42
VTI1A-207ENST00000489357 ZBTB47Q9UFB7 747 aaPredicted RBP12.42□□□□□ -0.42
VTI1A-207ENST00000489357 FRMPD1Q5SYB0 1578 aa12.42□□□□□ -0.42
VTI1A-207ENST00000489357 NCOA2Q15596 1464 aa12.41□□□□□ -0.42
VTI1A-207ENST00000489357 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.42
VTI1A-207ENST00000489357 DENND4BO75064 1496 aaPredicted RBP12.4□□□□□ -0.43
VTI1A-207ENST00000489357 MIA2Q96PC5 1412 aa12.39□□□□□ -0.43
VTI1A-207ENST00000489357 ARHGAP5Q13017 1502 aa12.39□□□□□ -0.43
VTI1A-207ENST00000489357 ARHGEF12Q9NZN5 1544 aa12.39□□□□□ -0.43
VTI1A-207ENST00000489357 RAPGEF3O95398 923 aa12.39□□□□□ -0.43
VTI1A-207ENST00000489357 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
VTI1A-207ENST00000489357 SCAPERQ9BY12 1400 aa12.38□□□□□ -0.43
VTI1A-207ENST00000489357 RAB3GAP2Q9H2M9 1393 aa12.38□□□□□ -0.43
VTI1A-207ENST00000489357 ADGRL1O94910 1474 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms