RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 PLIN1O60240 522 aa12.01□□□□□ -0.49
COPB1-202ENST00000439561 PDE4AP27815 886 aa12.01□□□□□ -0.49
COPB1-202ENST00000439561 FYCO1Q9BQS8 1478 aa12.01□□□□□ -0.49
COPB1-202ENST00000439561 ARXQ96QS3 562 aa12□□□□□ -0.49
COPB1-202ENST00000439561 SKAP1Q86WV1 359 aa12□□□□□ -0.49
COPB1-202ENST00000439561 PPM1GO15355 546 aaPredicted RBP11.99□□□□□ -0.49
COPB1-202ENST00000439561 TCERG1O14776 1098 aaKnown RBP11.98□□□□□ -0.49
COPB1-202ENST00000439561 NCAPD3P42695 1498 aa11.98□□□□□ -0.49
COPB1-202ENST00000439561 RRP1P56182 461 aaKnown RBP11.98□□□□□ -0.49
COPB1-202ENST00000439561 CC2D1BQ5T0F9 858 aaKnown RBP11.98□□□□□ -0.49
COPB1-202ENST00000439561 ZNF644Q9H582 1327 aaPredicted RBP11.97□□□□□ -0.49
COPB1-202ENST00000439561 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.97□□□□□ -0.493e-9■■□□□ 11.4
COPB1-202ENST00000439561 PKD2Q13563 968 aa11.97□□□□□ -0.49
COPB1-202ENST00000439561 RGS3P49796 1198 aa11.96□□□□□ -0.49
COPB1-202ENST00000439561 RGL3Q3MIN7 710 aa11.96□□□□□ -0.49
COPB1-202ENST00000439561 PTPN23Q9H3S7 1636 aa11.96□□□□□ -0.49
COPB1-202ENST00000439561 USP47Q96K76 1375 aa11.96□□□□□ -0.5
COPB1-202ENST00000439561 SMG6Q86US8 1419 aaKnown RBP11.95□□□□□ -0.5
COPB1-202ENST00000439561 DDRGK1Q96HY6 314 aa11.95□□□□□ -0.5
COPB1-202ENST00000439561 NCOA1Q15788 1441 aa11.94□□□□□ -0.5
COPB1-202ENST00000439561 DCAF11Q8TEB1 546 aa11.94□□□□□ -0.5
COPB1-202ENST00000439561 CFDP1Q9UEE9 299 aaPredicted RBP11.94□□□□□ -0.5
COPB1-202ENST00000439561 BRPF3Q9ULD4 1205 aa11.94□□□□□ -0.5
COPB1-202ENST00000439561 ST20-MTHFSA0A0A6YYL1 179 aa11.93□□□□□ -0.5
COPB1-202ENST00000439561 PNISRQ8TF01 805 aaKnown RBP11.93□□□□□ -0.5
COPB1-202ENST00000439561 CDCA7LQ96GN5 454 aa11.93□□□□□ -0.5
COPB1-202ENST00000439561 FBLN2P98095 1184 aa11.92□□□□□ -0.5
COPB1-202ENST00000439561 FANCD2Q9BXW9 1451 aa11.91□□□□□ -0.5
COPB1-202ENST00000439561 CRBNQ96SW2 442 aa11.91□□□□□ -0.5
COPB1-202ENST00000439561 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.9□□□□□ -0.58e-7■■■□□ 16.6
COPB1-202ENST00000439561 CANXP27824 592 aaKnown RBP11.88□□□□□ -0.51
COPB1-202ENST00000439561 BACH2Q9BYV9 841 aa11.88□□□□□ -0.51
COPB1-202ENST00000439561 MYBBP1AQ9BQG0 1328 aaKnown RBP11.88□□□□□ -0.51
COPB1-202ENST00000439561 CFAP43Q8NDM7 1665 aa11.88□□□□□ -0.51
COPB1-202ENST00000439561 GSE1Q14687 1217 aa11.88□□□□□ -0.51
COPB1-202ENST00000439561 USP35Q9P2H5 1018 aa11.88□□□□□ -0.51
COPB1-202ENST00000439561 WDR43Q15061 677 aaKnown RBP eCLIP11.87□□□□□ -0.51
COPB1-202ENST00000439561 EFCAB5A4FU69 1503 aa11.87□□□□□ -0.51
COPB1-202ENST00000439561 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
COPB1-202ENST00000439561 KIF15Q9NS87 1388 aa11.86□□□□□ -0.51
COPB1-202ENST00000439561 RALBP1Q15311 655 aa11.86□□□□□ -0.51
COPB1-202ENST00000439561 NFKBIBQ15653 356 aa11.86□□□□□ -0.51
COPB1-202ENST00000439561 NLRP13Q86W25 1043 aa11.85□□□□□ -0.51
COPB1-202ENST00000439561 ANKRD30BQ9BXX2 1392 aa11.85□□□□□ -0.51
COPB1-202ENST00000439561 TSPY4P0CV99 314 aa11.85□□□□□ -0.51
COPB1-202ENST00000439561 TSPY10P0CW01 314 aa11.85□□□□□ -0.51
COPB1-202ENST00000439561 KTN1Q86UP2 1357 aaKnown RBP11.84□□□□□ -0.51
COPB1-202ENST00000439561 FRAT1Q92837 279 aaPredicted RBP11.84□□□□□ -0.51
COPB1-202ENST00000439561 NUP155O75694 1391 aa11.83□□□□□ -0.52
COPB1-202ENST00000439561 MS4A1P11836 297 aa11.83□□□□□ -0.52
COPB1-202ENST00000439561 POLA1P09884 1462 aaPredicted RBP11.83□□□□□ -0.52
COPB1-202ENST00000439561 ROCK2O75116 1388 aaKnown RBP11.83□□□□□ -0.52
COPB1-202ENST00000439561 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.82□□□□□ -0.52
COPB1-202ENST00000439561 SUPT6HQ7KZ85 1726 aaKnown RBP11.81□□□□□ -0.52
COPB1-202ENST00000439561 SLKQ9H2G2 1235 aaPredicted RBP11.81□□□□□ -0.52
COPB1-202ENST00000439561 EHBP1L1Q8N3D4 1523 aa11.81□□□□□ -0.52
COPB1-202ENST00000439561 PDE3BQ13370 1112 aa11.8□□□□□ -0.52
COPB1-202ENST00000439561 RPRD2Q5VT52 1461 aaKnown RBP11.8□□□□□ -0.52
COPB1-202ENST00000439561 CDK13Q14004 1512 aaKnown RBP11.8□□□□□ -0.52
COPB1-202ENST00000439561 SNAPC4Q5SXM2 1469 aa11.8□□□□□ -0.52
COPB1-202ENST00000439561 C20orf194Q5TEA3 1177 aa11.79□□□□□ -0.52
COPB1-202ENST00000439561 NESP48681 1621 aa11.79□□□□□ -0.52
COPB1-202ENST00000439561 DHX29Q7Z478 1369 aaKnown RBP11.79□□□□□ -0.52
COPB1-202ENST00000439561 FRAT2O75474 233 aaPredicted RBP11.79□□□□□ -0.52
COPB1-202ENST00000439561 SPRYD3Q8NCJ5 442 aa11.78□□□□□ -0.52
COPB1-202ENST00000439561 RNF123Q5XPI4 1314 aa11.78□□□□□ -0.52
COPB1-202ENST00000439561 BRD4O60885 1362 aaPredicted RBP11.78□□□□□ -0.52
COPB1-202ENST00000439561 GAPVD1Q14C86 1478 aa11.78□□□□□ -0.52
COPB1-202ENST00000439561 PANK3Q9H999 370 aa11.78□□□□□ -0.52
COPB1-202ENST00000439561 KDM5BQ9UGL1 1544 aa11.77□□□□□ -0.52
COPB1-202ENST00000439561 TOPBP1Q92547 1522 aa11.77□□□□□ -0.53
COPB1-202ENST00000439561 CCDC146Q8IYE0 955 aa11.77□□□□□ -0.53
COPB1-202ENST00000439561 FAM161AQ3B820 660 aa11.76□□□□□ -0.53
COPB1-202ENST00000439561 KNSTRNQ9Y448 316 aa11.76□□□□□ -0.53
COPB1-202ENST00000439561 KDM6BO15054 1643 aa11.76□□□□□ -0.53
COPB1-202ENST00000439561 NEUROD2Q15784 382 aa11.76□□□□□ -0.53
COPB1-202ENST00000439561 DAPK1P53355 1430 aa11.76□□□□□ -0.53
COPB1-202ENST00000439561 ABCA10Q8WWZ4 1543 aa11.75□□□□□ -0.53
COPB1-202ENST00000439561 GRIN2BQ13224 1484 aa11.74□□□□□ -0.53
COPB1-202ENST00000439561 MIA2Q96PC5 1412 aa11.74□□□□□ -0.53
COPB1-202ENST00000439561 UPF2Q9HAU5 1272 aaKnown RBP11.74□□□□□ -0.53
COPB1-202ENST00000439561 ANKRD30AQ9BXX3 1397 aa11.74□□□□□ -0.53
COPB1-202ENST00000439561 PLEKHD1A6NEE1 506 aa11.74□□□□□ -0.53
COPB1-202ENST00000439561 NBPF1Q3BBV0 1214 aa11.74□□□□□ -0.53
COPB1-202ENST00000439561 CENPQQ7L2Z9 268 aaPredicted RBP11.74□□□□□ -0.53
COPB1-202ENST00000439561 GZF1Q9H116 711 aaPredicted RBP11.73□□□□□ -0.53
COPB1-202ENST00000439561 UGGT2Q9NYU1 1516 aa11.73□□□□□ -0.53
COPB1-202ENST00000439561 ADAMTS8Q9UP79 889 aa11.73□□□□□ -0.53
COPB1-202ENST00000439561 DENND4BO75064 1496 aaPredicted RBP11.73□□□□□ -0.53
COPB1-202ENST00000439561 EPRSP07814 1512 aaKnown RBP11.73□□□□□ -0.53
COPB1-202ENST00000439561 HNRNPMP52272 730 aaKnown RBP eCLIP11.73□□□□□ -0.53
COPB1-202ENST00000439561 BECN1Q14457 450 aa11.73□□□□□ -0.53
COPB1-202ENST00000439561 ABCC5O15440 1437 aa11.73□□□□□ -0.53
COPB1-202ENST00000439561 ARID4BQ4LE39 1312 aaPredicted RBP11.72□□□□□ -0.53
COPB1-202ENST00000439561 TMF1P82094 1093 aa11.72□□□□□ -0.53
COPB1-202ENST00000439561 SPATA31E1Q6ZUB1 1445 aa11.72□□□□□ -0.53
COPB1-202ENST00000439561 GOLGA2Q08379 1002 aa11.71□□□□□ -0.53
COPB1-202ENST00000439561 KIAA1107Q9UPP5 1409 aa11.71□□□□□ -0.53
COPB1-202ENST00000439561 TEX14Q8IWB6 1497 aa11.71□□□□□ -0.53
COPB1-202ENST00000439561 NAP1L5Q96NT1 182 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms