RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 NISCHQ9Y2I1 1504 aa16.8■□□□□ 0.28
COPB1-202ENST00000439561 SHROOM4Q9ULL8 1493 aa15.47■□□□□ 0.07
COPB1-202ENST00000439561 SUPT5HO00267 1087 aaKnown RBP15.44■□□□□ 0.06
COPB1-202ENST00000439561 DCAF8L2P0C7V8 631 aa15.05■□□□□ -0
COPB1-202ENST00000439561 PCGF6Q9BYE7 350 aa15.04■□□□□ -0
COPB1-202ENST00000439561 HRCP23327 699 aa14.96□□□□□ -0.01
COPB1-202ENST00000439561 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
COPB1-202ENST00000439561 CHIC1Q5VXU3 224 aa14.73□□□□□ -0.05
COPB1-202ENST00000439561 LOC105371045A0A1W2PR82 267 aa14.59□□□□□ -0.07
COPB1-202ENST00000439561 MYO15BQ96JP2 1530 aa14.56□□□□□ -0.08
COPB1-202ENST00000439561 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
COPB1-202ENST00000439561 FAM9AQ8IZU1 332 aaPredicted RBP14.39□□□□□ -0.11
COPB1-202ENST00000439561 TRIM26Q12899 539 aaPredicted RBP14.38□□□□□ -0.11
COPB1-202ENST00000439561 PELP1Q8IZL8 1130 aaKnown RBP14.25□□□□□ -0.13
COPB1-202ENST00000439561 ZEB1P37275 1124 aaPredicted RBP14.23□□□□□ -0.13
COPB1-202ENST00000439561 ZCCHC6Q5VYS8 1495 aaKnown RBP14.18□□□□□ -0.14
COPB1-202ENST00000439561 TRIM41Q8WV44 630 aa14.17□□□□□ -0.14
COPB1-202ENST00000439561 DCAF1Q9Y4B6 1507 aa14.15□□□□□ -0.14
COPB1-202ENST00000439561 TTBK1Q5TCY1 1321 aaPredicted RBP14.13□□□□□ -0.15
COPB1-202ENST00000439561 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
COPB1-202ENST00000439561 CCER1Q8TC90 406 aaPredicted RBP14.05□□□□□ -0.16
COPB1-202ENST00000439561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
COPB1-202ENST00000439561 CENPBP07199 599 aaPredicted RBP13.92□□□□□ -0.18
COPB1-202ENST00000439561 YTHDC1Q96MU7 727 aaKnown RBP13.89□□□□□ -0.19
COPB1-202ENST00000439561 GTF3C3Q9Y5Q9 886 aa13.87□□□□□ -0.19
COPB1-202ENST00000439561 CCDC180Q9P1Z9 1646 aa13.87□□□□□ -0.19
COPB1-202ENST00000439561 NEUROD1Q13562 356 aa13.85□□□□□ -0.19
COPB1-202ENST00000439561 ACIN1Q9UKV3 1341 aaKnown RBP13.84□□□□□ -0.19
COPB1-202ENST00000439561 DIEXFQ68CQ4 756 aaKnown RBP13.83□□□□□ -0.2
COPB1-202ENST00000439561 MYT1Q01538 1121 aa13.64□□□□□ -0.23
COPB1-202ENST00000439561 UBTFP17480 764 aaKnown RBP13.62□□□□□ -0.23
COPB1-202ENST00000439561 RANGAP1P46060 587 aaPredicted RBP13.58□□□□□ -0.23
COPB1-202ENST00000439561 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
COPB1-202ENST00000439561 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
COPB1-202ENST00000439561 SCRIBQ14160 1630 aa13.53□□□□□ -0.24
COPB1-202ENST00000439561 ZNF316A6NFI3 1004 aaPredicted RBP13.52□□□□□ -0.25
COPB1-202ENST00000439561 APLP2Q06481 763 aa13.47□□□□□ -0.25
COPB1-202ENST00000439561 RB1CC1Q8TDY2 1594 aa13.47□□□□□ -0.25
COPB1-202ENST00000439561 MIER1Q8N108 512 aa13.43□□□□□ -0.26
COPB1-202ENST00000439561 ABCC9O60706 1549 aa13.42□□□□□ -0.26
COPB1-202ENST00000439561 CECR2Q9BXF3 1484 aa13.3□□□□□ -0.28
COPB1-202ENST00000439561 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
COPB1-202ENST00000439561 CEP162Q5TB80 1403 aa13.26□□□□□ -0.29
COPB1-202ENST00000439561 BCANQ96GW7 911 aa13.23□□□□□ -0.29
COPB1-202ENST00000439561 ITGAEP38570 1179 aa13.23□□□□□ -0.29
COPB1-202ENST00000439561 MROH2BQ7Z745 1585 aa13.19□□□□□ -0.3
COPB1-202ENST00000439561 SOGA1O94964 1423 aa13.16□□□□□ -0.3
COPB1-202ENST00000439561 ABCC8Q09428 1581 aa13.14□□□□□ -0.31
COPB1-202ENST00000439561 CCDC88BA6NC98 1476 aa13.13□□□□□ -0.31
COPB1-202ENST00000439561 WIZO95785 1651 aa13.11□□□□□ -0.31
COPB1-202ENST00000439561 TNIKQ9UKE5 1360 aa13.1□□□□□ -0.31
COPB1-202ENST00000439561 SUPT16HQ9Y5B9 1047 aaKnown RBP13.09□□□□□ -0.31
COPB1-202ENST00000439561 NEFLP07196 543 aa13.07□□□□□ -0.32
COPB1-202ENST00000439561 WRNQ14191 1432 aaPredicted RBP eCLIP13.04□□□□□ -0.32
COPB1-202ENST00000439561 PABPN1Q86U42 306 aaKnown RBP eCLIP13.03□□□□□ -0.32
COPB1-202ENST00000439561 RUSC2Q8N2Y8 1516 aa13.03□□□□□ -0.32
COPB1-202ENST00000439561 CLIP1P30622 1438 aa13.01□□□□□ -0.33
COPB1-202ENST00000439561 ATP1B4Q9UN42 357 aaPredicted RBP13.01□□□□□ -0.33
COPB1-202ENST00000439561 FKBP8Q14318 412 aa13□□□□□ -0.33
COPB1-202ENST00000439561 GOLGA3Q08378 1498 aa12.99□□□□□ -0.33
COPB1-202ENST00000439561 ERICH6Q7L0X2 663 aa12.97□□□□□ -0.33
COPB1-202ENST00000439561 ANP32EQ9BTT0 268 aa12.97□□□□□ -0.33
COPB1-202ENST00000439561 TSHZ2Q9NRE2 1034 aa12.97□□□□□ -0.33
COPB1-202ENST00000439561 DDX10Q13206 875 aaKnown RBP12.94□□□□□ -0.34
COPB1-202ENST00000439561 CLSPNQ9HAW4 1339 aa12.94□□□□□ -0.34
COPB1-202ENST00000439561 KCNH8Q96L42 1107 aa12.93□□□□□ -0.34
COPB1-202ENST00000439561 EEA1Q15075 1411 aa12.92□□□□□ -0.34
COPB1-202ENST00000439561 HIRIP3Q9BW71 556 aaPredicted RBP12.92□□□□□ -0.34
COPB1-202ENST00000439561 TRIM52Q96A61 297 aa12.91□□□□□ -0.34
COPB1-202ENST00000439561 BAZ1AQ9NRL2 1556 aaPredicted RBP12.89□□□□□ -0.35
COPB1-202ENST00000439561 FAM50AQ14320 339 aaKnown RBP12.87□□□□□ -0.35
COPB1-202ENST00000439561 BCL11AQ9H165 835 aa12.86□□□□□ -0.35
COPB1-202ENST00000439561 NACADO15069 1562 aa12.86□□□□□ -0.35
COPB1-202ENST00000439561 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
COPB1-202ENST00000439561 VPS8Q8N3P4 1428 aa12.84□□□□□ -0.35
COPB1-202ENST00000439561 KANK4Q5T7N3 995 aaPredicted RBP12.84□□□□□ -0.35
COPB1-202ENST00000439561 DHX57Q6P158 1386 aaKnown RBP12.81□□□□□ -0.36
COPB1-202ENST00000439561 ANP32CO43423 234 aa12.81□□□□□ -0.36
COPB1-202ENST00000439561 IRX6P78412 446 aaPredicted RBP12.8□□□□□ -0.36
COPB1-202ENST00000439561 TOP2AP11388 1531 aaKnown RBP12.79□□□□□ -0.36
COPB1-202ENST00000439561 SIN3AQ96ST3 1273 aa12.77□□□□□ -0.37
COPB1-202ENST00000439561 CNGB1Q14028 1251 aaPredicted RBP12.76□□□□□ -0.37
COPB1-202ENST00000439561 RBM19Q9Y4C8 960 aaKnown RBP12.76□□□□□ -0.37
COPB1-202ENST00000439561 RAPGEF2Q9Y4G8 1499 aa12.76□□□□□ -0.37
COPB1-202ENST00000439561 P3H3Q8IVL6 736 aa12.75□□□□□ -0.37
COPB1-202ENST00000439561 SMARCA2P51531 1590 aa12.74□□□□□ -0.37
COPB1-202ENST00000439561 CDK11AQ9UQ88 783 aaPredicted RBP12.72□□□□□ -0.37
COPB1-202ENST00000439561 HNRNPUQ00839 825 aaKnown RBP eCLIP12.7□□□□□ -0.38
COPB1-202ENST00000439561 CCNB3Q8WWL7 1395 aa12.67□□□□□ -0.38
COPB1-202ENST00000439561 SMARCA4P51532 1647 aa12.67□□□□□ -0.38
COPB1-202ENST00000439561 EIF4G1Q04637 1599 aaKnown RBP12.66□□□□□ -0.38
COPB1-202ENST00000439561 RAB3GAP2Q9H2M9 1393 aa12.64□□□□□ -0.39
COPB1-202ENST00000439561 KIF21BO75037 1637 aa12.62□□□□□ -0.39
COPB1-202ENST00000439561 POLR3GLQ9BT43 218 aa12.61□□□□□ -0.39
COPB1-202ENST00000439561 TONSLQ96HA7 1378 aa12.6□□□□□ -0.39
COPB1-202ENST00000439561 SYNJ1O43426 1573 aa12.58□□□□□ -0.39
COPB1-202ENST00000439561 NBR1Q14596 966 aa12.58□□□□□ -0.4
COPB1-202ENST00000439561 FAM9BQ8IZU0 186 aa12.57□□□□□ -0.4
COPB1-202ENST00000439561 BAZ1BQ9UIG0 1483 aaKnown RBP12.56□□□□□ -0.4
COPB1-202ENST00000439561 SENP3-EIF4A1A0A087X0R7 540 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms