RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 ZBTB47Q9UFB7 747 aaPredicted RBP12.1□□□□□ -0.47
RTN4-206ENST00000394611 VPS8Q8N3P4 1428 aa12.1□□□□□ -0.47
RTN4-206ENST00000394611 PCF11O94913 1555 aaKnown RBP12.09□□□□□ -0.47
RTN4-206ENST00000394611 MSH5O43196 834 aa12.08□□□□□ -0.48
RTN4-206ENST00000394611 UACAQ9BZF9 1416 aa12.07□□□□□ -0.48
RTN4-206ENST00000394611 RAPGEF6Q8TEU7 1601 aa12.07□□□□□ -0.48
RTN4-206ENST00000394611 TONSLQ96HA7 1378 aa12.06□□□□□ -0.48
RTN4-206ENST00000394611 ABCA8O94911 1581 aa12.06□□□□□ -0.48
RTN4-206ENST00000394611 CASKIN1Q8WXD9 1431 aa12.05□□□□□ -0.48
RTN4-206ENST00000394611 NUP153P49790 1475 aaKnown RBP12.04□□□□□ -0.48
RTN4-206ENST00000394611 ADCY10Q96PN6 1610 aa12.04□□□□□ -0.48
RTN4-206ENST00000394611 LRRIQ1Q96JM4 1722 aa12.04□□□□□ -0.48
RTN4-206ENST00000394611 NOP58Q9Y2X3 529 aaKnown RBP12.04□□□□□ -0.48
RTN4-206ENST00000394611 ABCC2Q92887 1545 aa12.03□□□□□ -0.48
RTN4-206ENST00000394611 CDK13Q14004 1512 aaKnown RBP12.03□□□□□ -0.48
RTN4-206ENST00000394611 FYCO1Q9BQS8 1478 aa12.03□□□□□ -0.48
RTN4-206ENST00000394611 HECW1Q76N89 1606 aa12.02□□□□□ -0.49
RTN4-206ENST00000394611 EPRSP07814 1512 aaKnown RBP12.01□□□□□ -0.49
RTN4-206ENST00000394611 ATP10BO94823 1461 aa12□□□□□ -0.49
RTN4-206ENST00000394611 UHRF1BP1LA0JNW5 1464 aa12□□□□□ -0.49
RTN4-206ENST00000394611 NEFMP07197 916 aa11.99□□□□□ -0.49
RTN4-206ENST00000394611 RRP7BPQ9NSQ0 103 aa11.98□□□□□ -0.49
RTN4-206ENST00000394611 NPM1P06748 294 aaKnown RBP eCLIP11.98□□□□□ -0.49
RTN4-206ENST00000394611 IL27Q8NEV9 243 aa11.98□□□□□ -0.49
RTN4-206ENST00000394611 ZCCHC11Q5TAX3 1644 aaKnown RBP11.97□□□□□ -0.49
RTN4-206ENST00000394611 PAK3O75914 559 aaPredicted RBP11.97□□□□□ -0.49
RTN4-206ENST00000394611 KDM5BQ9UGL1 1544 aa11.96□□□□□ -0.49
RTN4-206ENST00000394611 ARID4BQ4LE39 1312 aaPredicted RBP11.96□□□□□ -0.49
RTN4-206ENST00000394611 DHX57Q6P158 1386 aaKnown RBP11.96□□□□□ -0.5
RTN4-206ENST00000394611 TIAM1Q13009 1591 aa11.95□□□□□ -0.5
RTN4-206ENST00000394611 FOXD1Q16676 465 aa11.95□□□□□ -0.5
RTN4-206ENST00000394611 CCDC18Q5T9S5 1454 aa11.95□□□□□ -0.5
RTN4-206ENST00000394611 MAGI3Q5TCQ9 1506 aa11.94□□□□□ -0.5
RTN4-206ENST00000394611 PLEKHD1A6NEE1 506 aa11.93□□□□□ -0.5
RTN4-206ENST00000394611 CFAP43Q8NDM7 1665 aa11.93□□□□□ -0.5
RTN4-206ENST00000394611 PPP4R2Q9NY27 417 aa11.93□□□□□ -0.5
RTN4-206ENST00000394611 SLC4A3P48751 1232 aa11.92□□□□□ -0.5
RTN4-206ENST00000394611 MTUS2Q5JR59 1369 aa11.92□□□□□ -0.5
RTN4-206ENST00000394611 ASXL2Q76L83 1435 aa11.92□□□□□ -0.5
RTN4-206ENST00000394611 SLC4A1APQ9BWU0 796 aaKnown RBP11.91□□□□□ -0.5
RTN4-206ENST00000394611 LRRC9Q6ZRR7 1453 aa11.91□□□□□ -0.5
RTN4-206ENST00000394611 MAP3K1Q13233 1512 aa11.89□□□□□ -0.51
RTN4-206ENST00000394611 RAB3GAP2Q9H2M9 1393 aa11.89□□□□□ -0.51
RTN4-206ENST00000394611 TMC1Q8TDI8 760 aa11.89□□□□□ -0.51
RTN4-206ENST00000394611 KDM2AQ9Y2K7 1162 aa11.88□□□□□ -0.51
RTN4-206ENST00000394611 TROQ12816 1431 aaPredicted RBP11.88□□□□□ -0.51
RTN4-206ENST00000394611 WDR7Q9Y4E6 1490 aa11.87□□□□□ -0.51
RTN4-206ENST00000394611 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
RTN4-206ENST00000394611 KIF14Q15058 1648 aa11.87□□□□□ -0.51
RTN4-206ENST00000394611 ZNF777Q9ULD5 760 aaPredicted RBP11.86□□□□□ -0.51
RTN4-206ENST00000394611 EHBP1L1Q8N3D4 1523 aa11.85□□□□□ -0.51
RTN4-206ENST00000394611 MAPKBP1O60336 1514 aa11.85□□□□□ -0.51
RTN4-206ENST00000394611 CCDC184Q52MB2 194 aa11.85□□□□□ -0.51
RTN4-206ENST00000394611 CCNB3Q8WWL7 1395 aa11.85□□□□□ -0.51
RTN4-206ENST00000394611 RGS3P49796 1198 aa11.83□□□□□ -0.52
RTN4-206ENST00000394611 FAM69CQ0P6D2 419 aa11.83□□□□□ -0.52
RTN4-206ENST00000394611 NCOA2Q15596 1464 aa11.83□□□□□ -0.52
RTN4-206ENST00000394611 EIF4G2P78344 907 aaKnown RBP eCLIP11.83□□□□□ -0.529e-7■■■■□ 19.9
RTN4-206ENST00000394611 SUPT6HQ7KZ85 1726 aaKnown RBP11.82□□□□□ -0.52
RTN4-206ENST00000394611 HSPA5P11021 654 aaKnown RBP11.82□□□□□ -0.52
RTN4-206ENST00000394611 SKAP1Q86WV1 359 aa11.82□□□□□ -0.52
RTN4-206ENST00000394611 TRHP20396 242 aaPredicted RBP11.82□□□□□ -0.52
RTN4-206ENST00000394611 PHLDB1Q86UU1 1377 aa11.81□□□□□ -0.52
RTN4-206ENST00000394611 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.81□□□□□ -0.527e-15■■□□□ 12
RTN4-206ENST00000394611 TTC37Q6PGP7 1564 aa11.81□□□□□ -0.52
RTN4-206ENST00000394611 ABCC10Q5T3U5 1492 aa11.79□□□□□ -0.52
RTN4-206ENST00000394611 SPRYD3Q8NCJ5 442 aa11.79□□□□□ -0.52
RTN4-206ENST00000394611 SENP3Q9H4L4 574 aaPredicted RBP11.79□□□□□ -0.52
RTN4-206ENST00000394611 DIP2BQ9P265 1576 aa11.79□□□□□ -0.52
RTN4-206ENST00000394611 MYT1LQ9UL68 1186 aa11.79□□□□□ -0.52
RTN4-206ENST00000394611 BRPF3Q9ULD4 1205 aa11.78□□□□□ -0.52
RTN4-206ENST00000394611 PPP1R15AO75807 674 aaPredicted RBP11.77□□□□□ -0.52
RTN4-206ENST00000394611 KIF13AQ9H1H9 1805 aa11.77□□□□□ -0.53
RTN4-206ENST00000394611 GPATCH8Q9UKJ3 1502 aaKnown RBP11.77□□□□□ -0.53
RTN4-206ENST00000394611 ABCA9Q8IUA7 1624 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 TSPOAP1O95153 1857 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 CDC42BPAQ5VT25 1732 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 CD109Q6YHK3 1445 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 ZNF644Q9H582 1327 aaPredicted RBP11.76□□□□□ -0.53
RTN4-206ENST00000394611 CCER2I3L3R5 266 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 PLIN1O60240 522 aa11.76□□□□□ -0.53
RTN4-206ENST00000394611 CFDP1Q9UEE9 299 aaPredicted RBP11.76□□□□□ -0.53
RTN4-206ENST00000394611 CANXP27824 592 aaKnown RBP11.75□□□□□ -0.53
RTN4-206ENST00000394611 ARID3AQ99856 593 aa11.75□□□□□ -0.53
RTN4-206ENST00000394611 MYOM3Q5VTT5 1437 aa11.75□□□□□ -0.53
RTN4-206ENST00000394611 FANCIQ9NVI1 1328 aa11.75□□□□□ -0.53
RTN4-206ENST00000394611 IPO9Q96P70 1041 aaKnown RBP11.75□□□□□ -0.53
RTN4-206ENST00000394611 MYO5CQ9NQX4 1742 aa11.74□□□□□ -0.53
RTN4-206ENST00000394611 CDC42BPBQ9Y5S2 1711 aa11.74□□□□□ -0.53
RTN4-206ENST00000394611 GLI2P10070 1586 aa11.73□□□□□ -0.53
RTN4-206ENST00000394611 ARHGAP5Q13017 1502 aa11.73□□□□□ -0.53
RTN4-206ENST00000394611 PLCH2O75038 1416 aa11.73□□□□□ -0.53
RTN4-206ENST00000394611 MAP3K4Q9Y6R4 1608 aa11.72□□□□□ -0.53
RTN4-206ENST00000394611 PREX2Q70Z35 1606 aa11.72□□□□□ -0.53
RTN4-206ENST00000394611 FGD6Q6ZV73 1430 aa11.72□□□□□ -0.53
RTN4-206ENST00000394611 ITSN2Q9NZM3 1697 aa11.71□□□□□ -0.54
RTN4-206ENST00000394611 GZF1Q9H116 711 aaPredicted RBP11.71□□□□□ -0.54
RTN4-206ENST00000394611 SLKQ9H2G2 1235 aaPredicted RBP11.71□□□□□ -0.54
RTN4-206ENST00000394611 EFCAB2Q5VUJ9 269 aa11.7□□□□□ -0.54
RTN4-206ENST00000394611 ZBTB7CA1YPR0 619 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms