RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 RGS17Q9UGC6 210 aaPredicted RBP13.75□□□□□ -0.21
CD44-205ENST00000352818 PHF23Q9BUL5 403 aaPredicted RBP13.73□□□□□ -0.21
CD44-205ENST00000352818 EFCAB5A4FU69 1503 aa13.73□□□□□ -0.21
CD44-205ENST00000352818 MAGI2Q86UL8 1455 aa13.73□□□□□ -0.21
CD44-205ENST00000352818 RAPGEF2Q9Y4G8 1499 aa13.71□□□□□ -0.21
CD44-205ENST00000352818 HECW1Q76N89 1606 aa13.7□□□□□ -0.22
CD44-205ENST00000352818 PIP4K2BP78356 416 aa13.69□□□□□ -0.22
CD44-205ENST00000352818 ATP10AO60312 1499 aa13.68□□□□□ -0.22
CD44-205ENST00000352818 NCKAP5LQ9HCH0 1330 aa13.68□□□□□ -0.22
CD44-205ENST00000352818 SETD1BQ9UPS6 1966 aaKnown RBP13.68□□□□□ -0.22
CD44-205ENST00000352818 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
CD44-205ENST00000352818 SCAF1Q9H7N4 1312 aaKnown RBP13.65□□□□□ -0.22
CD44-205ENST00000352818 C9orf84Q5VXU9 1444 aa13.65□□□□□ -0.22
CD44-205ENST00000352818 TRAPPC8Q9Y2L5 1435 aa13.64□□□□□ -0.23
CD44-205ENST00000352818 CAMSAP1Q5T5Y3 1602 aa13.64□□□□□ -0.23
CD44-205ENST00000352818 ALKQ9UM73 1620 aa13.63□□□□□ -0.23
CD44-205ENST00000352818 C3P01024 1663 aa13.61□□□□□ -0.23
CD44-205ENST00000352818 SCAPERQ9BY12 1400 aa13.6□□□□□ -0.23
CD44-205ENST00000352818 POTEAQ6S8J7 498 aa13.59□□□□□ -0.23
CD44-205ENST00000352818 P3H3Q8IVL6 736 aa13.59□□□□□ -0.23
CD44-205ENST00000352818 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.59□□□□□ -0.23
CD44-205ENST00000352818 NUP153P49790 1475 aaKnown RBP13.57□□□□□ -0.24
CD44-205ENST00000352818 TCOF1Q13428 1488 aaKnown RBP13.57□□□□□ -0.24
CD44-205ENST00000352818 TOM1O60784 492 aa13.57□□□□□ -0.24
CD44-205ENST00000352818 CFAP74Q9C0B2 1584 aa13.56□□□□□ -0.24
CD44-205ENST00000352818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.54□□□□□ -0.24
CD44-205ENST00000352818 HNRNPUL2Q1KMD3 747 aaKnown RBP13.54□□□□□ -0.24
CD44-205ENST00000352818 PKD2Q13563 968 aa13.53□□□□□ -0.24
CD44-205ENST00000352818 PLA2R1Q13018 1463 aa13.53□□□□□ -0.24
CD44-205ENST00000352818 CTTNBP2Q8WZ74 1663 aa13.53□□□□□ -0.24
CD44-205ENST00000352818 SENP3Q9H4L4 574 aaPredicted RBP13.52□□□□□ -0.25
CD44-205ENST00000352818 PPP6R1Q9UPN7 881 aa13.51□□□□□ -0.25
CD44-205ENST00000352818 RAPGEF6Q8TEU7 1601 aa13.5□□□□□ -0.25
CD44-205ENST00000352818 NPATQ14207 1427 aa13.5□□□□□ -0.25
CD44-205ENST00000352818 PLCH2O75038 1416 aa13.49□□□□□ -0.25
CD44-205ENST00000352818 DIP2CQ9Y2E4 1556 aa13.49□□□□□ -0.25
CD44-205ENST00000352818 PLEKHD1A6NEE1 506 aa13.48□□□□□ -0.25
CD44-205ENST00000352818 AFAP1Q8N556 730 aa13.48□□□□□ -0.25
CD44-205ENST00000352818 REREQ9P2R6 1566 aa13.48□□□□□ -0.25
CD44-205ENST00000352818 AGLP35573 1532 aa13.48□□□□□ -0.25
CD44-205ENST00000352818 CPS1P31327 1500 aa13.47□□□□□ -0.25
CD44-205ENST00000352818 SHANK2Q9UPX8 1470 aa13.47□□□□□ -0.25
CD44-205ENST00000352818 SETD1AO15047 1707 aaKnown RBP13.46□□□□□ -0.25
CD44-205ENST00000352818 KDM5CP41229 1560 aa13.45□□□□□ -0.26
CD44-205ENST00000352818 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
CD44-205ENST00000352818 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
CD44-205ENST00000352818 CNTLNQ9NXG0 1405 aa13.44□□□□□ -0.26
CD44-205ENST00000352818 ZMYM3Q14202 1370 aa13.44□□□□□ -0.26
CD44-205ENST00000352818 ABCA6Q8N139 1617 aa13.42□□□□□ -0.26
CD44-205ENST00000352818 ZNF518AQ6AHZ1 1483 aa13.42□□□□□ -0.26
CD44-205ENST00000352818 SAMD9Q5K651 1589 aa13.41□□□□□ -0.26
CD44-205ENST00000352818 CEP170BQ9Y4F5 1589 aaPredicted RBP13.41□□□□□ -0.26
CD44-205ENST00000352818 ZNF142P52746 1687 aaPredicted RBP13.41□□□□□ -0.26
CD44-205ENST00000352818 ESF1Q9H501 851 aaKnown RBP13.41□□□□□ -0.26
CD44-205ENST00000352818 PRXQ9BXM0 1461 aa13.41□□□□□ -0.26
CD44-205ENST00000352818 VWDEQ8N2E2 1590 aa13.41□□□□□ -0.26
CD44-205ENST00000352818 NEURL4Q96JN8 1562 aa13.41□□□□□ -0.26
CD44-205ENST00000352818 MYO3AQ8NEV4 1616 aa13.39□□□□□ -0.27
CD44-205ENST00000352818 EFCAB2Q5VUJ9 269 aa13.39□□□□□ -0.27
CD44-205ENST00000352818 FAM9AQ8IZU1 332 aaPredicted RBP13.39□□□□□ -0.27
CD44-205ENST00000352818 MLH3Q9UHC1 1453 aa13.38□□□□□ -0.27
CD44-205ENST00000352818 MROH2AA6NES4 1674 aa13.34□□□□□ -0.27
CD44-205ENST00000352818 LRRC7Q96NW7 1537 aa13.34□□□□□ -0.27
CD44-205ENST00000352818 CDK13Q14004 1512 aaKnown RBP13.33□□□□□ -0.28
CD44-205ENST00000352818 MYT1LQ9UL68 1186 aa13.32□□□□□ -0.28
CD44-205ENST00000352818 DNMT1P26358 1616 aaKnown RBP13.31□□□□□ -0.28
CD44-205ENST00000352818 A2ML1A8K2U0 1454 aa13.31□□□□□ -0.28
CD44-205ENST00000352818 STRCP1A6NGW2 1772 aa13.28□□□□□ -0.28
CD44-205ENST00000352818 RNF17Q9BXT8 1623 aaKnown RBP13.27□□□□□ -0.29
CD44-205ENST00000352818 SUPT6HQ7KZ85 1726 aaKnown RBP13.27□□□□□ -0.29
CD44-205ENST00000352818 KIDINS220Q9ULH0 1771 aa13.26□□□□□ -0.29
CD44-205ENST00000352818 MYO5CQ9NQX4 1742 aa13.25□□□□□ -0.29
CD44-205ENST00000352818 CLTCQ00610 1675 aaKnown RBP13.24□□□□□ -0.29
CD44-205ENST00000352818 KIF14Q15058 1648 aa13.24□□□□□ -0.29
CD44-205ENST00000352818 ARHGAP5Q13017 1502 aa13.24□□□□□ -0.29
CD44-205ENST00000352818 MED14O60244 1454 aa13.24□□□□□ -0.29
CD44-205ENST00000352818 POLR1AO95602 1720 aaPredicted RBP13.24□□□□□ -0.29
CD44-205ENST00000352818 NPHP4O75161 1426 aaPredicted RBP13.23□□□□□ -0.29
CD44-205ENST00000352818 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.23□□□□□ -0.29
CD44-205ENST00000352818 FAM135BQ49AJ0 1406 aa13.22□□□□□ -0.29
CD44-205ENST00000352818 ANKLE2Q86XL3 938 aa13.21□□□□□ -0.29
CD44-205ENST00000352818 TRIM52Q96A61 297 aa13.21□□□□□ -0.29
CD44-205ENST00000352818 ABCC1P33527 1531 aa13.21□□□□□ -0.29
CD44-205ENST00000352818 RANGAP1P46060 587 aaPredicted RBP13.2□□□□□ -0.3
CD44-205ENST00000352818 FBXO31Q5XUX0 539 aaPredicted RBP13.2□□□□□ -0.3
CD44-205ENST00000352818 EEA1Q15075 1411 aa13.2□□□□□ -0.3
CD44-205ENST00000352818 SYNMO15061 1565 aa13.18□□□□□ -0.3
CD44-205ENST00000352818 PLXNC1O60486 1568 aa13.17□□□□□ -0.3
CD44-205ENST00000352818 TNRQ92752 1358 aa13.17□□□□□ -0.3
CD44-205ENST00000352818 DEPDC5O75140 1603 aa13.16□□□□□ -0.3
CD44-205ENST00000352818 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
CD44-205ENST00000352818 LRP6O75581 1613 aa13.15□□□□□ -0.3
CD44-205ENST00000352818 LOC105371045A0A1W2PR82 267 aa13.15□□□□□ -0.3
CD44-205ENST00000352818 GGT6Q6P531 493 aa13.15□□□□□ -0.3
CD44-205ENST00000352818 ITSN2Q9NZM3 1697 aa13.15□□□□□ -0.31
CD44-205ENST00000352818 CDC42BPBQ9Y5S2 1711 aa13.14□□□□□ -0.31
CD44-205ENST00000352818 TROQ12816 1431 aaPredicted RBP13.13□□□□□ -0.31
CD44-205ENST00000352818 IQGAP1P46940 1657 aa13.12□□□□□ -0.31
CD44-205ENST00000352818 SETBP1Q9Y6X0 1596 aa13.12□□□□□ -0.31
CD44-205ENST00000352818 XIRP1Q702N8 1843 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms