RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
CD44-205ENST00000352818 ABCC9O60706 1549 aa19.61■□□□□ 0.73
CD44-205ENST00000352818 DNAJC5BQ9UF47 199 aa19.42■□□□□ 0.7
CD44-205ENST00000352818 CCDC180Q9P1Z9 1646 aa18.55■□□□□ 0.56
CD44-205ENST00000352818 DNAJC5Q9H3Z4 198 aa18.4■□□□□ 0.54
CD44-205ENST00000352818 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
CD44-205ENST00000352818 RB1CC1Q8TDY2 1594 aa18.14■□□□□ 0.49
CD44-205ENST00000352818 NACADO15069 1562 aa17.82■□□□□ 0.44
CD44-205ENST00000352818 BICRAQ9NZM4 1560 aa17.81■□□□□ 0.44
CD44-205ENST00000352818 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
CD44-205ENST00000352818 UNC13AQ9UPW8 1703 aa17.72■□□□□ 0.43
CD44-205ENST00000352818 CC2D2AQ9P2K1 1620 aa17.63■□□□□ 0.41
CD44-205ENST00000352818 DCAF8L2P0C7V8 631 aa17.53■□□□□ 0.4
CD44-205ENST00000352818 EIF4G1Q04637 1599 aaKnown RBP17.37■□□□□ 0.37
CD44-205ENST00000352818 SHROOM4Q9ULL8 1493 aa17.32■□□□□ 0.36
CD44-205ENST00000352818 MYO15BQ96JP2 1530 aa17.3■□□□□ 0.36
CD44-205ENST00000352818 CUX2O14529 1486 aa17.23■□□□□ 0.35
CD44-205ENST00000352818 TRIM41Q8WV44 630 aa17.14■□□□□ 0.33
CD44-205ENST00000352818 SCRIBQ14160 1630 aa16.93■□□□□ 0.3
CD44-205ENST00000352818 ERCC6Q03468 1493 aa16.91■□□□□ 0.3
CD44-205ENST00000352818 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
CD44-205ENST00000352818 ZCCHC6Q5VYS8 1495 aaKnown RBP16.69■□□□□ 0.26
CD44-205ENST00000352818 NESP48681 1621 aa16.63■□□□□ 0.25
CD44-205ENST00000352818 THOC2Q8NI27 1593 aaKnown RBP16.58■□□□□ 0.24
CD44-205ENST00000352818 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
CD44-205ENST00000352818 ATAD2BQ9ULI0 1458 aa16.37■□□□□ 0.21
CD44-205ENST00000352818 SMARCA2P51531 1590 aa16.37■□□□□ 0.21
CD44-205ENST00000352818 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
CD44-205ENST00000352818 BAZ1AQ9NRL2 1556 aaPredicted RBP16.27■□□□□ 0.2
CD44-205ENST00000352818 HMGXB3Q12766 1538 aa16.27■□□□□ 0.2
CD44-205ENST00000352818 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
CD44-205ENST00000352818 AEBP2Q6ZN18 517 aaPredicted RBP16.23■□□□□ 0.19
CD44-205ENST00000352818 LAMC3Q9Y6N6 1575 aa16.21■□□□□ 0.19
CD44-205ENST00000352818 RIMBP3CA6NJZ7 1639 aa16.19■□□□□ 0.18
CD44-205ENST00000352818 RIMBP3BA6NNM3 1639 aa16.19■□□□□ 0.18
CD44-205ENST00000352818 RIMBP3Q9UFD9 1639 aa16.19■□□□□ 0.18
CD44-205ENST00000352818 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
CD44-205ENST00000352818 WDR62O43379 1518 aa16.14■□□□□ 0.17
CD44-205ENST00000352818 MRC2Q9UBG0 1479 aa16.13■□□□□ 0.17
CD44-205ENST00000352818 BAZ1BQ9UIG0 1483 aaKnown RBP16.08■□□□□ 0.16
CD44-205ENST00000352818 ARHGEF11O15085 1522 aa16.08■□□□□ 0.16
CD44-205ENST00000352818 TRHP20396 242 aaPredicted RBP16.07■□□□□ 0.16
CD44-205ENST00000352818 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
CD44-205ENST00000352818 CYB5RLQ6IPT4 315 aa16.02■□□□□ 0.16
CD44-205ENST00000352818 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
CD44-205ENST00000352818 PEG3Q9GZU2 1588 aa15.92■□□□□ 0.14
CD44-205ENST00000352818 ARAP1Q96P48 1450 aa15.9■□□□□ 0.14
CD44-205ENST00000352818 ILDR1Q86SU0 546 aaPredicted RBP15.89■□□□□ 0.13
CD44-205ENST00000352818 CEP164Q9UPV0 1460 aa15.84■□□□□ 0.13
CD44-205ENST00000352818 FANCD2Q9BXW9 1451 aa15.79■□□□□ 0.12
CD44-205ENST00000352818 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
CD44-205ENST00000352818 ZNF608Q9ULD9 1512 aaPredicted RBP15.76■□□□□ 0.11
CD44-205ENST00000352818 MROH2BQ7Z745 1585 aa15.73■□□□□ 0.11
CD44-205ENST00000352818 RSF1Q96T23 1441 aaPredicted RBP15.64■□□□□ 0.09
CD44-205ENST00000352818 CFTRP13569 1480 aa15.62■□□□□ 0.09
CD44-205ENST00000352818 IFT140Q96RY7 1462 aa15.58■□□□□ 0.08
CD44-205ENST00000352818 CHD1O14646 1710 aa15.51■□□□□ 0.07
CD44-205ENST00000352818 EIF4G3O43432 1585 aaKnown RBP15.51■□□□□ 0.07
CD44-205ENST00000352818 AQRO60306 1485 aaKnown RBP eCLIP15.46■□□□□ 0.07
CD44-205ENST00000352818 FBLN2P98095 1184 aa15.46■□□□□ 0.07
CD44-205ENST00000352818 KDM4FA0A1W2PPD8 638 aa15.44■□□□□ 0.06
CD44-205ENST00000352818 CLASP1Q7Z460 1538 aa15.43■□□□□ 0.06
CD44-205ENST00000352818 WIZO95785 1651 aa15.42■□□□□ 0.06
CD44-205ENST00000352818 TOPBP1Q92547 1522 aa15.39■□□□□ 0.05
CD44-205ENST00000352818 TARBP1Q13395 1621 aaKnown RBP15.33■□□□□ 0.04
CD44-205ENST00000352818 GAPVD1Q14C86 1478 aa15.32■□□□□ 0.04
CD44-205ENST00000352818 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
CD44-205ENST00000352818 TDRD9Q8NDG6 1382 aaKnown RBP15.22■□□□□ 0.03
CD44-205ENST00000352818 SYNJ1O43426 1573 aa15.21■□□□□ 0.03
CD44-205ENST00000352818 DNMBPQ6XZF7 1577 aa15.2■□□□□ 0.02
CD44-205ENST00000352818 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
CD44-205ENST00000352818 CHMP7Q8WUX9 453 aaPredicted RBP15.19■□□□□ 0.02
CD44-205ENST00000352818 RAD54L2Q9Y4B4 1467 aa15.19■□□□□ 0.02
CD44-205ENST00000352818 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
CD44-205ENST00000352818 ERCC6L2Q5T890 1561 aa15.18■□□□□ 0.02
CD44-205ENST00000352818 PRDM2Q13029 1718 aa15.16■□□□□ 0.02
CD44-205ENST00000352818 KIF13AQ9H1H9 1805 aa15.15■□□□□ 0.02
CD44-205ENST00000352818 TOP2AP11388 1531 aaKnown RBP15.15■□□□□ 0.02
CD44-205ENST00000352818 MAGI1Q96QZ7 1491 aaPredicted RBP15.11■□□□□ 0.01
CD44-205ENST00000352818 SYNJ2O15056 1496 aa15.1■□□□□ 0.01
CD44-205ENST00000352818 FBXO41Q8TF61 875 aa15.08■□□□□ 0
CD44-205ENST00000352818 SOGA1O94964 1423 aa15.08■□□□□ 0
CD44-205ENST00000352818 HECW2Q9P2P5 1572 aa15.07■□□□□ 0
CD44-205ENST00000352818 CCDC88BA6NC98 1476 aa15.05■□□□□ -0
CD44-205ENST00000352818 FAM69CQ0P6D2 419 aa15.04■□□□□ -0
CD44-205ENST00000352818 GRIN2BQ13224 1484 aa15.03■□□□□ -0
CD44-205ENST00000352818 ABCC10Q5T3U5 1492 aa15.02■□□□□ -0
CD44-205ENST00000352818 ADGRL1O94910 1474 aa14.99□□□□□ -0.01
CD44-205ENST00000352818 WDR97A6NE52 1622 aa14.99□□□□□ -0.01
CD44-205ENST00000352818 KDM6BO15054 1643 aa14.98□□□□□ -0.01
CD44-205ENST00000352818 CEP170Q5SW79 1584 aa14.98□□□□□ -0.01
CD44-205ENST00000352818 LMTK3Q96Q04 1460 aa14.96□□□□□ -0.01
CD44-205ENST00000352818 FGD5Q6ZNL6 1462 aa14.95□□□□□ -0.02
CD44-205ENST00000352818 DIP2BQ9P265 1576 aa14.94□□□□□ -0.02
CD44-205ENST00000352818 ILDR2Q71H61 639 aa14.92□□□□□ -0.02
CD44-205ENST00000352818 SOCS7O14512 581 aa14.89□□□□□ -0.03
CD44-205ENST00000352818 NUP160Q12769 1436 aa14.89□□□□□ -0.03
CD44-205ENST00000352818 SHROOM2Q13796 1616 aa14.88□□□□□ -0.03
CD44-205ENST00000352818 MAPKBP1O60336 1514 aa14.87□□□□□ -0.03
CD44-205ENST00000352818 GRIN2AQ12879 1464 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms