RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Crocc2F6XLV1 1638 aa16.89■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Upf2A2AT37 1269 aaKnown RBP16.89■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Fhad1A6PWD2 1420 aa16.89■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Ccnb3Q810T2 1396 aa16.88■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Trim26Q99PN3 545 aa16.88■□□□□ 0.29
Clcn3-201ENSMUST00000004430 EprsQ8CGC7 1512 aaKnown RBP16.87■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Pkd2O35245 966 aa16.87■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Mrc2Q64449 1479 aa16.86■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Gm1043A0A140LJC2 1431 aa16.86■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Gm7298A0A0N4SVU1 1476 aa16.86■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Plppr3Q7TPB0 716 aa16.85■□□□□ 0.29
Clcn3-201ENSMUST00000004430 ChgaP26339 463 aaKnown RBP16.85■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Pak3Q61036 559 aa16.85■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Tcerg1Q8CGF7 1100 aaKnown RBP16.85■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Neurod2Q62414 383 aa16.85■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Spryd3E9Q9B3 442 aa16.83■□□□□ 0.29
Clcn3-201ENSMUST00000004430 Vps8Q0P5W1 1427 aa16.83■□□□□ 0.28
Clcn3-201ENSMUST00000004430 CadpsQ80TJ1 1355 aa16.83■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Mphosph9A6H5Y1 991 aa16.82■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Smg6P61406 1418 aaKnown RBP16.82■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Arid4bA2CG63 1314 aaKnown RBP16.82■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Irx3P81067 507 aa16.82■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Vsig10D3YX43 558 aa16.81■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Peg3Q3URU2 1571 aa16.81■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Cabp1Q9JLK7 227 aa16.81■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Rundc1Q0VDN7 615 aa16.8■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Naip2Q9QUK4 1447 aa16.8■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Plb1Q3TTY0 1478 aa16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Hsp90ab1P11499 724 aaKnown RBP16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Kif21aQ9QXL2 1672 aa16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Ccdc9Q8VC31 543 aaKnown RBP16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Pla2r1Q62028 1487 aa16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Ankrd36D3Z4K0 1415 aa16.79■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Arhgap27A2AB59 869 aa16.78■□□□□ 0.28
Clcn3-201ENSMUST00000004430 4930567H17RikQ3V0K5 233 aa16.78■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Dnajc5bQ9CQ94 199 aa16.78■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Kdm2aP59997 1161 aa16.77■□□□□ 0.28
Clcn3-201ENSMUST00000004430 Armcx1Q9CX83 456 aa16.77■□□□□ 0.27
Clcn3-201ENSMUST00000004430 A2mQ6GQT1 1474 aa16.77■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Ipo9Q91YE6 1041 aa16.76■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Grin2aP35436 1464 aa16.75■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Cwc22Q8C5N3 908 aaKnown RBP16.75■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Gpatch8A2A6A1 1505 aa16.75■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Gm13695A2AK44 830 aa16.73■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Atp1b4Q99ME6 356 aa16.73■□□□□ 0.27
Clcn3-201ENSMUST00000004430 WrnO09053 1401 aa16.72■□□□□ 0.27
Clcn3-201ENSMUST00000004430 UacaQ8CGB3 1411 aa16.71■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Magi3Q9EQJ9 1476 aa16.71■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Hdac5Q9Z2V6 1113 aa16.71■□□□□ 0.27
Clcn3-201ENSMUST00000004430 Trak1Q6PD31 939 aa16.69■□□□□ 0.26
Clcn3-201ENSMUST00000004430 NexmifQ5DTT1 1515 aa16.68■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Kcnh8P59111 1102 aa16.68■□□□□ 0.26
Clcn3-201ENSMUST00000004430 DekQ7TNV0 380 aaKnown RBP16.67■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Disp1Q3TDN0 1521 aa16.67■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Chmp5Q9D7S9 219 aa16.67■□□□□ 0.26
Clcn3-201ENSMUST00000004430 WizO88286 1684 aaKnown RBP16.67■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Slc4a2P13808 1237 aaKnown RBP16.66■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Ecm2Q5FW85 670 aa16.65■□□□□ 0.26
Clcn3-201ENSMUST00000004430 Abca5Q8K448 1642 aa16.64■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Soga1E1U8D0 1418 aa16.64■□□□□ 0.25
Clcn3-201ENSMUST00000004430 BC005561E9Q5E2 1589 aa16.64■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Gtf3c3Q3TMP1 882 aa16.63■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Mtus2Q3UHD3 1353 aa16.63■□□□□ 0.25
Clcn3-201ENSMUST00000004430 PxdnQ3UQ28 1475 aa16.63■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Lmtk2Q3TYD6 1471 aa16.63■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Ythdc1E9Q5K9 736 aaKnown RBP16.62■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Zscan21Q07231 555 aa16.62■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Plekhh2Q8C115 1491 aa16.61■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Rrp7aQ9D1C9 280 aaKnown RBP16.6■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Mroh3A0A1D5RM54 893 aa16.6■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Ppm1gQ61074 542 aa16.6■□□□□ 0.25
Clcn3-201ENSMUST00000004430 CrbnQ8C7D2 445 aa16.59■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Zfp644E9QA22 1323 aa16.59■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Ift140E9PY46 1464 aa16.58■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Mak16Q8BGS0 296 aaKnown RBP16.58■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Dnai1Q8C0M8 701 aa16.58■□□□□ 0.25
Clcn3-201ENSMUST00000004430 Usp47Q8BY87 1376 aa16.57■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Rwdd1Q9CQK7 243 aa16.57■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Mug1P28665 1476 aa16.57■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Cnga1P29974 684 aa16.56■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Adamts12Q811B3 1600 aa16.55■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Clstn2Q9ER65 966 aa16.55■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Plcb2A3KGF7 1181 aa16.55■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Speer4f1Q9D5Q6 258 aa16.55■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Ncoa2Q61026 1462 aa16.55■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Map4P27546 1125 aaKnown RBP16.54■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Naip5Q9R016 1403 aa16.54■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Ncoa3O09000 1398 aa16.54■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Plcd4Q8K3R3 807 aa16.54■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Abcc5Q9R1X5 1436 aa16.53■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Washc2Q6PGL7 1334 aa16.52■□□□□ 0.24
Clcn3-201ENSMUST00000004430 Ifit1bl1D3Z6F0 470 aa16.51■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Dennd4bQ3U1Y4 1499 aa16.51■□□□□ 0.23
Clcn3-201ENSMUST00000004430 EspnQ9ET47 871 aa16.5■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Cc2d2bA0A286YDU8 1405 aa16.5■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Arhgap31A6X8Z5 1425 aa16.5■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Sart3Q9JLI8 962 aaKnown RBP16.5■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Gcc2Q8CHG3 1679 aa16.5■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Rfx7F8VPJ6 1459 aa16.48■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Nup160Q9Z0W3 1402 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 22,080 RNA–protein pairs in 27.9 ms