RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	RRP3	P38712	501 aa	Known RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	VPS52	P39904	641 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	PTR3	P43606	678 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	FAR3	P46671	204 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	SNG1	P46950	547 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	DUG3	P53871	357 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	IMP4	P53941	290 aa	Known RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	RPC11	Q04307	110 aa	Predicted RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	CDC45	Q08032	650 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	YBR126W-A	Q8TGU7	68 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	MRP13	P12686	339 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	BOS1	P25385	244 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	SGF29	P25554	259 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	VPS17	P32913	551 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	YBR144C	P34215	104 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	UBP11	P36026	717 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	YTA12	P40341	825 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	DSD1	P53095	428 aa		4.14	□□□□□ -1.75
SHR3	YDL212W	SVL3	Q03088	825 aa	Known RBP	4.14	□□□□□ -1.75
SHR3	YDL212W	BUD22	Q04347	519 aa	Known RBP	4.14	□□□□□ -1.75
SHR3	YDL212W	SGS1	P35187	1447 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	ICS2	P38284	255 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	YHR218W	P38899	603 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	RPR2	P40571	144 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	RTT101	P47050	842 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	YDL186W	P48568	277 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	YGR127W	P53275	312 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	PPT2	Q12036	173 aa		4.13	□□□□□ -1.75
SHR3	YDL212W	APE1	P14904	514 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	AMD1	P15274	810 aa	Known RBP	4.12	□□□□□ -1.75
SHR3	YDL212W	DPB3	P27344	201 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	AGA1	P32323	725 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	NDC1	P32500	655 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	OSH3	P38713	996 aa	Known RBP	4.12	□□□□□ -1.75
SHR3	YDL212W	MDM31	P38880	579 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	RPH1	P39956	796 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	SHR3	Q02774	210 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	RLI1	Q03195	608 aa	Known RBP	4.12	□□□□□ -1.75
SHR3	YDL212W	COQ9	Q05779	260 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	YOR365C	Q08844	703 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	YDR056C	Q12025	205 aa		4.12	□□□□□ -1.75
SHR3	YDL212W	PEP4	P07267	405 aa	Known RBP	4.11	□□□□□ -1.75
SHR3	YDL212W	PEP5	P12868	1029 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	ELO2	P25358	347 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	YCR022C	P25620	114 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	PAH1	P32567	862 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	YKL023W	P36103	277 aa	Known RBP	4.11	□□□□□ -1.75
SHR3	YDL212W	YBL029W	P38201	376 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	CSM2	P40465	213 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
SHR3	YDL212W	COS10	P52924	374 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	YGR126W	P53274	230 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	GLO2	Q05584	274 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	YDL057W	Q07379	328 aa		4.11	□□□□□ -1.75
SHR3	YDL212W	FMP40	Q08968	688 aa	Predicted RBP	4.11	□□□□□ -1.75
SHR3	YDL212W	NOP58	Q12499	511 aa	Known RBP	4.11	□□□□□ -1.75
SHR3	YDL212W	RAD52	P06778	471 aa	Known RBP	4.1	□□□□□ -1.75
SHR3	YDL212W	GDH1	P07262	454 aa	Known RBP	4.1	□□□□□ -1.75
SHR3	YDL212W	BUD14	P27637	709 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	SPC110	P32380	944 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	PTR2	P32901	601 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	MTC4	P38335	694 aa	Known RBP	4.1	□□□□□ -1.75
SHR3	YDL212W	YHR210C	P38893	341 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	AFG3	P39925	761 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	VID27	P40157	782 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	YFR016C	P43597	1233 aa	Known RBP	4.1	□□□□□ -1.75
SHR3	YDL212W	UPF3	P48412	387 aa	Known RBP	4.1	□□□□□ -1.75
SHR3	YDL212W	YGL082W	P53155	381 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	SDH5	Q08230	162 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	AYT1	Q12226	474 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	SET6	Q12529	373 aa		4.1	□□□□□ -1.75
SHR3	YDL212W	MTF1	P14908	341 aa	Known RBP	4.09	□□□□□ -1.75
SHR3	YDL212W	AAC3	P18238	307 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	MCK1	P21965	375 aa	Known RBP	4.09	□□□□□ -1.75
SHR3	YDL212W	SAN1	P22470	610 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	CPR3	P25719	182 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	FRE1	P32791	686 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	YOX1	P34161	385 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	CIN4	P39110	191 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
SHR3	YDL212W	YJL213W	P40896	331 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	YJR154W	P47181	346 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	ALT2	P52892	507 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	IPI3	P53877	555 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	ERP1	Q05359	219 aa	Known RBP	4.09	□□□□□ -1.75
SHR3	YDL212W	BNA5	Q05979	453 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	SYO1	Q07395	620 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	TLG2	Q08144	397 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	NMD4	Q12129	218 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	YPT6	Q99260	215 aa		4.09	□□□□□ -1.75
SHR3	YDL212W	HEM2	P05373	342 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	EST1	P17214	699 aa	Predicted RBP	4.08	□□□□□ -1.76
SHR3	YDL212W	ART10	P18634	518 aa	Known RBP	4.08	□□□□□ -1.76
SHR3	YDL212W	SAC6	P32599	642 aa	Known RBP	4.08	□□□□□ -1.76
SHR3	YDL212W	FLC2	P39719	783 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	AIM22	P47051	409 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	SLD5	Q03406	294 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	YEH1	Q07804	573 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	HUA2	Q12134	243 aa		4.08	□□□□□ -1.76
SHR3	YDL212W	HSH49	Q99181	213 aa	Predicted RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.9 ms