Protein–RNA interactions for Protein: P39956

RPH1, DNA damage-responsive transcriptional repressor RPH1, yeastyeast

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPH1P39956 YML009W-BYML009W-B 477 nt20.49■□□□□ 0.87
RPH1P39956 NSR1YGR159C 1245 nt20.26■□□□□ 0.83
RPH1P39956 NOP1YDL014W 984 nt19.97■□□□□ 0.79
RPH1P39956 YKL036CYKL036C 393 nt18.47■□□□□ 0.55
RPH1P39956 MDJ1YFL016C 1536 nt17.9■□□□□ 0.46
RPH1P39956 Q0297Q0297 156 nt17.44■□□□□ 0.38
RPH1P39956 SRX1YKL086W 384 nt17.4■□□□□ 0.38
RPH1P39956 YJL027CYJL027C 417 nt17.28■□□□□ 0.36
RPH1P39956 SCS3YGL126W 1143 nt16.81■□□□□ 0.28
RPH1P39956 YCR051WYCR051W 669 nt16.58■□□□□ 0.24
RPH1P39956 YOL085CYOL085C 342 nt15.98■□□□□ 0.15
RPH1P39956 DBP2YNL112W 1641 nt15.81■□□□□ 0.12
RPH1P39956 PKP1YIL042C 1185 nt15.76■□□□□ 0.11
RPH1P39956 RPP1BYDL130W 321 nt15.67■□□□□ 0.1
RPH1P39956 TRN1tP(UGG)A 72 nt15.65■□□□□ 0.1
RPH1P39956 SUF9tP(UGG)F 72 nt15.65■□□□□ 0.1
RPH1P39956 SUF8tP(UGG)H 72 nt15.65■□□□□ 0.1
RPH1P39956 tP(UGG)LtP(UGG)L 72 nt15.65■□□□□ 0.1
RPH1P39956 SUF7tP(UGG)M 72 nt15.65■□□□□ 0.1
RPH1P39956 tP(UGG)N1tP(UGG)N1 72 nt15.65■□□□□ 0.1
RPH1P39956 tP(UGG)N2tP(UGG)N2 72 nt15.65■□□□□ 0.1
RPH1P39956 tP(UGG)O1tP(UGG)O1 72 nt15.65■□□□□ 0.1
RPH1P39956 SUF11tP(UGG)O2 72 nt15.65■□□□□ 0.1
RPH1P39956 CCC1YLR220W 969 nt15.6■□□□□ 0.09
RPH1P39956 YBR190WYBR190W 312 nt15.24■□□□□ 0.03
RPH1P39956 ATS1YAL020C 1002 nt15.08■□□□□ 0
RPH1P39956 SCJ1YMR214W 1134 nt15□□□□□ -0.01
RPH1P39956 RVS167YDR388W 1449 nt15□□□□□ -0.01
RPH1P39956 RTC3YHR087W 336 nt14.99□□□□□ -0.01
RPH1P39956 PET122YER153C 765 nt14.96□□□□□ -0.01
RPH1P39956 SCR1SCR1 522 nt14.88□□□□□ -0.03
RPH1P39956 tP(UGG)O3tP(UGG)O3 72 nt14.87□□□□□ -0.03
RPH1P39956 SSA3YBL075C 1950 nt14.7□□□□□ -0.06
RPH1P39956 RRN5YLR141W 1092 nt14.56□□□□□ -0.08
RPH1P39956 SHR5YOL110W 714 nt14.45□□□□□ -0.1
RPH1P39956 YDJ1YNL064C 1230 nt14.37□□□□□ -0.11
RPH1P39956 RSB1YOR049C 1065 nt14.31□□□□□ -0.12
RPH1P39956 YER088W-BYER088W-B 147 nt14.25□□□□□ -0.13
RPH1P39956 GAR1YHR089C 618 nt14.08□□□□□ -0.16
RPH1P39956 DEP1YAL013W 1218 nt14.05□□□□□ -0.16
RPH1P39956 URN1YPR152C 1398 nt14.01□□□□□ -0.17
RPH1P39956 PST2YDR032C 597 nt13.93□□□□□ -0.18
RPH1P39956 RPN10YHR200W 807 nt13.85□□□□□ -0.19
RPH1P39956 YNL208WYNL208W 600 nt13.83□□□□□ -0.2
RPH1P39956 OPI9YLR338W 858 nt13.76□□□□□ -0.21
RPH1P39956 PUT4YOR348C 1884 nt13.72□□□□□ -0.21
RPH1P39956 SAH1YER043C 1350 nt13.67□□□□□ -0.22
RPH1P39956 TIR1YER011W 765 nt13.58□□□□□ -0.24
RPH1P39956 ARE1YCR048W 1833 nt13.5□□□□□ -0.25
RPH1P39956 YKL097CYKL097C 411 nt13.47□□□□□ -0.25
RPH1P39956 PUN1YLR414C 792 nt13.39□□□□□ -0.27
RPH1P39956 YJR018WYJR018W 363 nt13.38□□□□□ -0.27
RPH1P39956 POA1YBR022W 534 nt13.38□□□□□ -0.27
RPH1P39956 YHR049C-AYHR049C-A 297 nt13.37□□□□□ -0.27
RPH1P39956 SSA1YAL005C 1929 nt13.37□□□□□ -0.27
RPH1P39956 SHU1YHL006C 453 nt13.35□□□□□ -0.27
RPH1P39956 PTC2YER089C 1395 nt13.21□□□□□ -0.29
RPH1P39956 RPP2BYDR382W 333 nt13.17□□□□□ -0.3
RPH1P39956 YAL037C-BYAL037C-B 975 nt13.17□□□□□ -0.3
RPH1P39956 BUD23YCR047C 828 nt13.13□□□□□ -0.31
RPH1P39956 SRB2YHR041C 633 nt13.11□□□□□ -0.31
RPH1P39956 YJR120WYJR120W 351 nt13.09□□□□□ -0.31
RPH1P39956 BSC6YOL137W 1494 nt13.03□□□□□ -0.32
RPH1P39956 NAB2YGL122C 1578 nt13.03□□□□□ -0.32
RPH1P39956 WWM1YFL010C 636 nt13□□□□□ -0.33
RPH1P39956 YGR021WYGR021W 873 nt12.96□□□□□ -0.33
RPH1P39956 FPR4YLR449W 1179 nt12.92□□□□□ -0.34
RPH1P39956 INM2YDR287W 879 nt12.91□□□□□ -0.34
RPH1P39956 HOM6YJR139C 1080 nt12.88□□□□□ -0.35
RPH1P39956 BDH2YAL061W 1254 nt12.87□□□□□ -0.35
RPH1P39956 DAL1YIR027C 1383 nt12.86□□□□□ -0.35
RPH1P39956 YOR139CYOR139C 393 nt12.85□□□□□ -0.35
RPH1P39956 MNP1YGL068W 585 nt12.84□□□□□ -0.35
RPH1P39956 NPL3YDR432W 1245 nt12.81□□□□□ -0.36
RPH1P39956 YFL021C-AYFL021C-A 855 nt12.78□□□□□ -0.36
RPH1P39956 YBL100CYBL100C 315 nt12.78□□□□□ -0.36
RPH1P39956 FIS1YIL065C 468 nt12.77□□□□□ -0.37
RPH1P39956 PHO4YFR034C 939 nt12.73□□□□□ -0.37
RPH1P39956 LSM3YLR438C-A 270 nt12.72□□□□□ -0.37
RPH1P39956 RKM5YLR137W 1104 nt12.7□□□□□ -0.38
RPH1P39956 SSA4YER103W 1929 nt12.69□□□□□ -0.38
RPH1P39956 TRM9YML014W 840 nt12.66□□□□□ -0.38
RPH1P39956 YOL037CYOL037C 354 nt12.66□□□□□ -0.38
RPH1P39956 SPT5YML010W 3192 nt12.66□□□□□ -0.38
RPH1P39956 FUN26YAL022C 1554 nt12.62□□□□□ -0.39
RPH1P39956 ALF1YNL148C 765 nt12.48□□□□□ -0.41
RPH1P39956 CCT6YDR188W 1641 nt12.45□□□□□ -0.42
RPH1P39956 YPS1YLR120C 1710 nt12.42□□□□□ -0.42
RPH1P39956 SUF2tP(AGG)C 72 nt12.4□□□□□ -0.42
RPH1P39956 SUF10tP(AGG)N 72 nt12.4□□□□□ -0.42
RPH1P39956 tM(CAU)CtM(CAU)C 72 nt12.37□□□□□ -0.43
RPH1P39956 IMT4tM(CAU)E 72 nt12.37□□□□□ -0.43
RPH1P39956 IMT3tM(CAU)J3 72 nt12.37□□□□□ -0.43
RPH1P39956 IMT1tM(CAU)O1 72 nt12.37□□□□□ -0.43
RPH1P39956 IMT2tM(CAU)P 72 nt12.37□□□□□ -0.43
RPH1P39956 YLR281CYLR281C 468 nt12.37□□□□□ -0.43
RPH1P39956 YDR095CYDR095C 411 nt12.36□□□□□ -0.43
RPH1P39956 YHR165W-AYHR165W-A 312 nt12.36□□□□□ -0.43
RPH1P39956 BDF1YLR399C 2061 nt12.34□□□□□ -0.43
RPH1P39956 WHI5YOR083W 888 nt12.34□□□□□ -0.43
Retrieved 100 of 7,029 protein–RNA pairs in 15.3 ms