Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 NSR1YGR159C 1245 nt19.58■□□□□ 0.72
UPF3P48412 YML009W-BYML009W-B 477 nt19.36■□□□□ 0.69
UPF3P48412 NOP1YDL014W 984 nt18.79■□□□□ 0.6
UPF3P48412 MDJ1YFL016C 1536 nt17.61■□□□□ 0.41
UPF3P48412 YKL036CYKL036C 393 nt17.29■□□□□ 0.36
UPF3P48412 Q0297Q0297 156 nt16.5■□□□□ 0.23
UPF3P48412 SRX1YKL086W 384 nt16.46■□□□□ 0.23
UPF3P48412 YJL027CYJL027C 417 nt16.26■□□□□ 0.19
UPF3P48412 SCS3YGL126W 1143 nt15.7■□□□□ 0.1
UPF3P48412 YCR051WYCR051W 669 nt15.52■□□□□ 0.08
UPF3P48412 DBP2YNL112W 1641 nt15.47■□□□□ 0.07
UPF3P48412 YBR190WYBR190W 312 nt15.16■□□□□ 0.02
UPF3P48412 YOL085CYOL085C 342 nt15□□□□□ -0.01
UPF3P48412 TRN1tP(UGG)A 72 nt14.99□□□□□ -0.01
UPF3P48412 SUF9tP(UGG)F 72 nt14.99□□□□□ -0.01
UPF3P48412 SUF8tP(UGG)H 72 nt14.99□□□□□ -0.01
UPF3P48412 tP(UGG)LtP(UGG)L 72 nt14.99□□□□□ -0.01
UPF3P48412 SUF7tP(UGG)M 72 nt14.99□□□□□ -0.01
UPF3P48412 tP(UGG)N1tP(UGG)N1 72 nt14.99□□□□□ -0.01
UPF3P48412 tP(UGG)N2tP(UGG)N2 72 nt14.99□□□□□ -0.01
UPF3P48412 tP(UGG)O1tP(UGG)O1 72 nt14.99□□□□□ -0.01
UPF3P48412 SUF11tP(UGG)O2 72 nt14.99□□□□□ -0.01
UPF3P48412 RPP1BYDL130W 321 nt14.77□□□□□ -0.05
UPF3P48412 CCC1YLR220W 969 nt14.77□□□□□ -0.05
UPF3P48412 RTC3YHR087W 336 nt14.74□□□□□ -0.05
UPF3P48412 PKP1YIL042C 1185 nt14.7□□□□□ -0.06
UPF3P48412 RVS167YDR388W 1449 nt14.5□□□□□ -0.09
UPF3P48412 SCJ1YMR214W 1134 nt14.33□□□□□ -0.12
UPF3P48412 PET122YER153C 765 nt14.1□□□□□ -0.15
UPF3P48412 tP(UGG)O3tP(UGG)O3 72 nt14.08□□□□□ -0.16
UPF3P48412 ATS1YAL020C 1002 nt14.04□□□□□ -0.16
UPF3P48412 PUT4YOR348C 1884 nt13.97□□□□□ -0.17
UPF3P48412 SHR5YOL110W 714 nt13.93□□□□□ -0.18
UPF3P48412 SCR1SCR1 522 nt13.89□□□□□ -0.19
UPF3P48412 SSA3YBL075C 1950 nt13.75□□□□□ -0.21
UPF3P48412 URN1YPR152C 1398 nt13.71□□□□□ -0.22
UPF3P48412 RRN5YLR141W 1092 nt13.69□□□□□ -0.22
UPF3P48412 YDJ1YNL064C 1230 nt13.66□□□□□ -0.22
UPF3P48412 OPI9YLR338W 858 nt13.61□□□□□ -0.23
UPF3P48412 ARE1YCR048W 1833 nt13.61□□□□□ -0.23
UPF3P48412 DEP1YAL013W 1218 nt13.57□□□□□ -0.24
UPF3P48412 SAH1YER043C 1350 nt13.55□□□□□ -0.24
UPF3P48412 POA1YBR022W 534 nt13.48□□□□□ -0.25
UPF3P48412 RPN10YHR200W 807 nt13.47□□□□□ -0.25
UPF3P48412 YHR049C-AYHR049C-A 297 nt13.44□□□□□ -0.26
UPF3P48412 YER088W-BYER088W-B 147 nt13.43□□□□□ -0.26
UPF3P48412 YNL208WYNL208W 600 nt13.39□□□□□ -0.27
UPF3P48412 GAR1YHR089C 618 nt13.33□□□□□ -0.28
UPF3P48412 RSB1YOR049C 1065 nt13.33□□□□□ -0.28
UPF3P48412 Q0182Q0182 405 nt13.32□□□□□ -0.28
UPF3P48412 BSC6YOL137W 1494 nt13.27□□□□□ -0.29
UPF3P48412 PUN1YLR414C 792 nt13.22□□□□□ -0.29
UPF3P48412 BUD23YCR047C 828 nt13.08□□□□□ -0.32
UPF3P48412 YJR018WYJR018W 363 nt13.07□□□□□ -0.32
UPF3P48412 PTC2YER089C 1395 nt13.07□□□□□ -0.32
UPF3P48412 PST2YDR032C 597 nt13.06□□□□□ -0.32
UPF3P48412 NAB2YGL122C 1578 nt12.96□□□□□ -0.33
UPF3P48412 TIR1YER011W 765 nt12.92□□□□□ -0.34
UPF3P48412 SPT5YML010W 3192 nt12.88□□□□□ -0.35
UPF3P48412 SSA1YAL005C 1929 nt12.81□□□□□ -0.36
UPF3P48412 YJR120WYJR120W 351 nt12.8□□□□□ -0.36
UPF3P48412 MOT3YMR070W 1473 nt12.74□□□□□ -0.37
UPF3P48412 FIS1YIL065C 468 nt12.74□□□□□ -0.37
UPF3P48412 DAL1YIR027C 1383 nt12.73□□□□□ -0.37
UPF3P48412 RPP2BYDR382W 333 nt12.73□□□□□ -0.37
UPF3P48412 INM2YDR287W 879 nt12.67□□□□□ -0.38
UPF3P48412 FPR4YLR449W 1179 nt12.64□□□□□ -0.39
UPF3P48412 PHO4YFR034C 939 nt12.6□□□□□ -0.39
UPF3P48412 SRB2YHR041C 633 nt12.56□□□□□ -0.4
UPF3P48412 SSA4YER103W 1929 nt12.54□□□□□ -0.4
UPF3P48412 SHU1YHL006C 453 nt12.5□□□□□ -0.41
UPF3P48412 MEP2YNL142W 1500 nt12.5□□□□□ -0.41
UPF3P48412 YBL100CYBL100C 315 nt12.47□□□□□ -0.41
UPF3P48412 YPS1YLR120C 1710 nt12.47□□□□□ -0.41
UPF3P48412 BDH2YAL061W 1254 nt12.43□□□□□ -0.42
UPF3P48412 YKL097CYKL097C 411 nt12.41□□□□□ -0.42
UPF3P48412 YDR095CYDR095C 411 nt12.36□□□□□ -0.43
UPF3P48412 YHR165W-AYHR165W-A 312 nt12.33□□□□□ -0.44
UPF3P48412 FUN26YAL022C 1554 nt12.3□□□□□ -0.44
UPF3P48412 WWM1YFL010C 636 nt12.29□□□□□ -0.44
UPF3P48412 YAL037C-BYAL037C-B 975 nt12.28□□□□□ -0.44
UPF3P48412 DCW1YKL046C 1350 nt12.26□□□□□ -0.45
UPF3P48412 LSM3YLR438C-A 270 nt12.24□□□□□ -0.45
UPF3P48412 TRM9YML014W 840 nt12.24□□□□□ -0.45
UPF3P48412 YGR021WYGR021W 873 nt12.21□□□□□ -0.45
UPF3P48412 HOM6YJR139C 1080 nt12.2□□□□□ -0.46
UPF3P48412 ALF1YNL148C 765 nt12.2□□□□□ -0.46
UPF3P48412 CCT6YDR188W 1641 nt12.15□□□□□ -0.47
UPF3P48412 YFL021C-AYFL021C-A 855 nt12.14□□□□□ -0.47
UPF3P48412 EMI2YDR516C 1503 nt12.13□□□□□ -0.47
UPF3P48412 RPP2AYOL039W 321 nt12.12□□□□□ -0.47
UPF3P48412 PTP1YDL230W 1008 nt12.1□□□□□ -0.47
UPF3P48412 YMR090WYMR090W 684 nt12.1□□□□□ -0.47
UPF3P48412 BDF1YLR399C 2061 nt12.09□□□□□ -0.47
UPF3P48412 SUF2tP(AGG)C 72 nt12.07□□□□□ -0.48
UPF3P48412 SUF10tP(AGG)N 72 nt12.07□□□□□ -0.48
UPF3P48412 MNP1YGL068W 585 nt12.06□□□□□ -0.48
UPF3P48412 SIS1YNL007C 1059 nt12.04□□□□□ -0.48
UPF3P48412 CAC2YML102W 1407 nt12.03□□□□□ -0.48
UPF3P48412 YDL221WYDL221W 552 nt12.02□□□□□ -0.49
Retrieved 100 of 7,029 protein–RNA pairs in 12.2 ms